[package - main-powerpc64le-default][biology/metaeuk] Failed for metaeuk-6_2 in build
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Date: Fri, 29 Dec 2023 03:42:00 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p384f6f077a9c_seac3646fcd/logs/metaeuk-6_2.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p384f6f077a9c_seac3646fcd
Log:
=>> Building biology/metaeuk
build started at Fri Dec 29 03:29:54 UTC 2023
port directory: /usr/ports/biology/metaeuk
package name: metaeuk-6_2
building for: FreeBSD main-powerpc64le-default-job-07 15.0-CURRENT FreeBSD 15.0-CURRENT 1500007 powerpc
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1084 Sep 17 01:03 /usr/ports/biology/metaeuk/Makefile
Ports top last git commit: 384f6f077a
Ports top unclean checkout: no
Port dir last git commit: 213c779e49
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.0
Host OSVERSION: 1500000
Jail OSVERSION: 1500007
Job Id: 07
!!! Jail is newer than host. (Jail: 1500007, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500007
UNAME_v=FreeBSD 15.0-CURRENT 1500007
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.0
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
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POUDRIERE_PKGNAME=poudriere-git-3.4.0
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for metaeuk-6_2:
NATIVE=off: Use native optimization (-march=native)
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/metaeuk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/metaeuk/work/.cache HOME=/wrkdirs/usr/ports/biology/metaeuk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/metaeuk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/metaeuk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/metaeuk/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 55
5" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/metaeuk" EXAMPLESDIR="share/examples/metaeuk" DATADIR="share/metaeuk" WWWDIR="www/metaeuk" ETCDIR="etc/metaeuk"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/metaeuk DOCSDIR=/usr/local/share/doc/metaeuk EXAMPLESDIR=/usr/local/share/examples/metaeuk WWWDIR=/usr/local/www/metaeuk ETCDIR=/usr/local/etc/metaeuk
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[main-powerpc64le-default-job-07] Installing pkg-1.20.9...
[main-powerpc64le-default-job-07] Extracting pkg-1.20.9: .......... done
===> metaeuk-6_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of metaeuk-6_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
=> SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by metaeuk-6_2 for building
===> Extracting for metaeuk-6_2
=> SHA256 Checksum OK for soedinglab-metaeuk-6-a5d39d9_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-metaeuk-regression-6404519_GH0.tar.gz.
=> SHA256 Checksum OK for soedinglab-MMseqs2-Regression-f69b185_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for metaeuk-6_2
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> metaeuk-6_2 depends on executable: xxd - not found
===> Installing existing package /packages/All/vim-9.0.2143_1.pkg
[main-powerpc64le-default-job-07] Installing vim-9.0.2143_1...
[main-powerpc64le-default-job-07] `-- Installing gettext-runtime-0.22.3...
[main-powerpc64le-default-job-07] | `-- Installing indexinfo-0.3.1...
[main-powerpc64le-default-job-07] | `-- Extracting indexinfo-0.3.1: .... done
[main-powerpc64le-default-job-07] `-- Extracting gettext-runtime-0.22.3: .......... done
[main-powerpc64le-default-job-07] `-- Installing python39-3.9.18...
[main-powerpc64le-default-job-07] | `-- Installing libffi-3.4.4...
[main-powerpc64le-default-job-07] | `-- Extracting libffi-3.4.4: .......... done
<snip>
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1765:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1765 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1971:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1971 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2126:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2126 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2182:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2182 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Application.cpp:4:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment/DistanceCalculator.h:8:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:574:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
574 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
5 warnings generated.
[ 41% 117/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/BaseMatrix.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/BaseMatrix.cpp:4:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1765:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1765 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1971:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1971 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2126:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2126 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2182:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2182 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/BaseMatrix.cpp:4:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:574:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
574 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
5 warnings generated.
[ 42% 118/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1765:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1765 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1971:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1971 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2126:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2126 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2182:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2182 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:574:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
574 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
5 warnings generated.
[ 42% 119/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Command.cpp
[ 42% 120/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CommandCaller.cpp
FAILED: lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o
/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseq
s/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-prote
ctor-strong -fno-strict-aliasing -O2 -pipe -!
fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CommandCaller.cpp
Attributes 'zeroext and signext' are incompatible!
ptr @omp_get_proc_bind
fatal error: error in backend: Broken module found, compilation aborted!
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metae
uk-6-a5d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -
O2 -pipe -fstack-protector-strong -fno-stric!
t-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CommandCaller.cpp
1. <eof> parser at end of file
2. Code generation
#0 0x00000000161d1c0c (/usr/bin/c+++0x161d1c0c)
#1 0x00000000161cf450 (/usr/bin/c+++0x161cf450)
#2 0x000000001617d2b4 (/usr/bin/c+++0x1617d2b4)
#3 0x000000001617d21c (/usr/bin/c+++0x1617d21c)
#4 0x00000000161b7340 (/usr/bin/c+++0x161b7340)
#5 0x0000000011f79e20 (/usr/bin/c+++0x11f79e20)
#6 0x0000000016188cb8 (/usr/bin/c+++0x16188cb8)
#7 0x0000000016188b4c (/usr/bin/c+++0x16188b4c)
#8 0x0000000015c2a0cc (/usr/bin/c+++0x15c2a0cc)
#9 0x0000000015b830a8 (/usr/bin/c+++0x15b830a8)
#10 0x0000000015b7b308 (/usr/bin/c+++0x15b7b308)
#11 0x0000000012bef154 (/usr/bin/c+++0x12bef154)
#12 0x0000000012fed0d8 (/usr/bin/c+++0x12fed0d8)
#13 0x000000001383b7a0 (/usr/bin/c+++0x1383b7a0)
#14 0x0000000012ed3a60 (/usr/bin/c+++0x12ed3a60)
#15 0x0000000012fea51c (/usr/bin/c+++0x12fea51c)
#16 0x0000000012ed305c (/usr/bin/c+++0x12ed305c)
#17 0x0000000012e3e800 (/usr/bin/c+++0x12e3e800)
#18 0x0000000012fe37d0 (/usr/bin/c+++0x12fe37d0)
#19 0x0000000011f793b8 (/usr/bin/c+++0x11f793b8)
#20 0x0000000011f8ad98 (/usr/bin/c+++0x11f8ad98)
#21 0x0000000012c9be38 (/usr/bin/c+++0x12c9be38)
#22 0x000000001617d178 (/usr/bin/c+++0x1617d178)
#23 0x0000000012c9b024 (/usr/bin/c+++0x12c9b024)
#24 0x0000000012c51cd8 (/usr/bin/c+++0x12c51cd8)
#25 0x0000000012c5209c (/usr/bin/c+++0x12c5209c)
#26 0x0000000012c71754 (/usr/bin/c+++0x12c71754)
#27 0x0000000011f8a48c (/usr/bin/c+++0x11f8a48c)
#28 0x0000000011f86d94 (/usr/bin/c+++0x11f86d94)
#29 0x0000000818a794e8 __libc_start1 (/lib/libc.so.7+0x9a4e8)
#30 0x0000000011f78a70 (/usr/bin/c+++0x11f78a70)
c++: error: clang frontend command failed with exit code 70 (use -v to see invocation)
FreeBSD clang version 17.0.6 (https://github.com/llvm/llvm-project.git llvmorg-17.0.6-0-g6009708b4367)
Target: powerpc64le-unknown-freebsd15.0
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/CommandCaller-414ec4.cpp
c++: note: diagnostic msg: /tmp/CommandCaller-414ec4.sh
c++: note: diagnostic msg:
********************
[ 43% 120/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBConcat.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1765:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1765 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1971:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1971 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2126:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2126 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2182:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2182 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:574:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
574 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
5 warnings generated.
[ 43% 120/275] /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5
d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pip
e -fstack-protector-strong -fno-strict-alias!
ing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.cpp
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.cpp:5:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.h:9:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1765:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1765 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:1971:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1971 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2126:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2126 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse2.h:2182:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2182 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.cpp:5:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.h:9:
In file included from /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd/simd.h:336:
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde/simde/x86/sse4.1.h:574:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
574 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CSProfile.cpp:138:12: warning: variable 'mean' set but not used [-Wunused-but-set-variable]
138 | double mean = 0.0;
| ^
6 warnings generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/metaeuk