From nobody Sun Dec 10 14:16:25 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Sp6PQ0WTzz53sxq for ; Sun, 10 Dec 2023 14:16:26 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Sp6PP5pDVz3Cwf for ; Sun, 10 Dec 2023 14:16:25 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702217785; a=rsa-sha256; cv=none; b=GIHjjTipHlJO9hZGIhJW/+uTcFBnGkrRsPT46cJwdnRmm5RFgizl1hbwi/eJ907E7u7/CO p1ghc2MRyGi1veouVj5rR+7sLENAvLvCSCojtDnCk+KJNIeSBDdUFprx+w65wlKsDL9Pz1 vWTGMIpBihRH6bzyW2guZWkkKrbsclutttBWseMrKSfLKgV0RGoa3HdoIyIZahZpFLVXy9 bXtRC2T4EElq10VWDbXczrqzrUrxA77EzZx0VUGElpD5xg11eMc2yGQmagScZfBtDZy3ZV GQD8T8MulNEQzBPWZnrl33/R1MaHtGJO6DqYi2T3m5q/5r2afzoYoAB9iehRIQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702217785; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=GF/I4ZTE77LjR+LBnYahbRQ48G7pu6DH1foUgcG4t4I=; b=e4/W1xvJP2OBRanPv4Kg4FdZyjiL6vf+fry5DiciQPAXAnVBbPehHKzmTRzV+qgxQ7lhQl 3mkAMxzSdm56UMQ1dubSXR6R/sxZxInI1lx3KBa+IfOoSBagRIcLI5v+v+Rmes3q5nW/cb EY9Lt1ftZoY5Ljotg6RgN0thRm/RDd4pVVqjiYe4O2UskozPkGT1eDhqSziUETpR/GN2JJ /IPMcpqIBeanDlcpPeSMF2vfC7unif9KQ0kWL1JFNwtTFVeSu/yDyKzObBVX+GvOfoW/Ua FkOjB3lYqAhgo0b0dG5f6OE+rr49Sqn1LFjDX3FPjO1BfM6QtQUa9MhQEslUhg== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Sp6PP4rJszr6Y for ; Sun, 10 Dec 2023 14:16:25 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BAEGPx0029549 for ; Sun, 10 Dec 2023 14:16:25 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 3BAEGP6o029542; Sun, 10 Dec 2023 14:16:25 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 10 Dec 2023 14:16:25 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202312101416.3BAEGP6o029542@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64le-default][biology/megahit] Failed for megahit-1.2.9_1 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pff89313922da_s51e7276365/logs/megahit-1.2.9_1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pff89313922da_s51e7276365 Log: =>> Building biology/megahit build started at Sun Dec 10 14:11:37 UTC 2023 port directory: /usr/ports/biology/megahit package name: megahit-1.2.9_1 building for: FreeBSD main-powerpc64le-default-job-09 15.0-CURRENT FreeBSD 15.0-CURRENT 1500005 powerpc maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 536 Dec 29 2022 /usr/ports/biology/megahit/Makefile Ports top last git commit: ff89313922 Ports top unclean checkout: no Port dir last git commit: 687b6f92f4 Port dir unclean checkout: no Poudriere version: poudriere-git-3.3.0-1258-gbc38e2e6 Host OSVERSION: 1500000 Jail OSVERSION: 1500005 Job Id: 09 !!! Jail is newer than host. (Jail: 1500005, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500005 UNAME_v=FreeBSD 15.0-CURRENT 1500005 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.0-1258-gbc38e2e6 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.3.0-1258-gbc38e2e6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/megahit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [main-powerpc64le-default-job-09] Installing pkg-1.20.9... [main-powerpc64le-default-job-09] Extracting pkg-1.20.9: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of megahit-1.2.9_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by megahit-1.2.9_1 for building ===> Extracting for megahit-1.2.9_1 => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for megahit-1.2.9_1 ===> Applying FreeBSD patches for megahit-1.2.9_1 from /usr/ports/biology/megahit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.27.8.pkg [main-powerpc64le-default-job-09] Installing cmake-core-3.27.8... [main-powerpc64le-default-job-09] `-- Installing expat-2.5.0... [main-powerpc64le-default-job-09] `-- Extracting expat-2.5.0: .......... done [main-powerpc64le-default-job-09] `-- Installing jsoncpp-1.9.5... [main-powerpc64le-default-job-09] `-- Extracting jsoncpp-1.9.5: .......... done [main-powerpc64le-default-job-09] `-- Installing libuv-1.47.0... [main-powerpc64le-default-job-09] `-- Extracting libuv-1.47.0: .......... done [main-powerpc64le-default-job-09] `-- Installing rhash-1.4.4... [main-powerpc64le-default-job-09] | `-- Installing gettext-runtime-0.22.3... [main-powerpc64le-default-job-09] | | `-- Installing indexinfo-0.3.1... [main-powerpc64le-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done [main-powerpc64le-default-job-09] | `-- Extracting gettext-runtime-0.22.3: .......... done [main-powerpc64le-default-job-09] `-- Extracting rhash-1.4.4: .......... done [main-powerpc64le-default-job-09] Extracting cmake-core-3.27.8: .......... done ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here is_trivially_destructible::value> ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) return; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] bool, __has_trivial_assign(typename std::remove_reference::type) && ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here phmap::is_trivially_copy_assignable, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) return; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] : std::integral_constant, unsigned short>>>' requested here is_trivially_destructible::value> ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here bool unused = phmap::is_trivially_copy_constructible::value&& ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] bool, __has_trivial_assign(typename std::remove_reference::type) && ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here phmap::is_trivially_copy_assignable, unsigned short>>>' required here class optional : private optional_internal::optional_data, ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here phmap::optional alloc_; ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here class node_handle : public node_handle_base ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here collection_.insert({kmer, mul}); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here if (ReadReadsAndProcessKernel>(opt, index)) ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here ReadReadsAndProcess(opt, index); ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here runners.emplace_back(new Runner>()); ^ 29 warnings generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/megahit