[package - 124i386-quarterly][science/py-libgetar] Failed for py39-libgetar-1.1.3_1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 22 Aug 2023 20:03:17 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/py39-libgetar-1.1.3_1.log
Build URL:      https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40
Log:

=>> Building science/py-libgetar
build started at Tue Aug 22 20:02:32 UTC 2023
port directory: /usr/ports/science/py-libgetar
package name: py39-libgetar-1.1.3_1
building for: FreeBSD 124i386-quarterly-job-01 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-libgetar-1.1.3_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-01] Installing pkg-1.19.2...
[124i386-quarterly-job-01] Extracting pkg-1.19.2: .......... done
===>   py39-libgetar-1.1.3_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-libgetar-1.1.3_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-libgetar-1.1.3_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-libgetar-1.1.3_1 for building
=> SHA256 Checksum OK for glotzerlab-libgetar-v1.1.3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-libgetar-1.1.3_1 for building
===>  Extracting for py39-libgetar-1.1.3_1
=> SHA256 Checksum OK for glotzerlab-libgetar-v1.1.3_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-libgetar-1.1.3_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-libgetar-1.1.3_1 depends on package: py39-numpy>=1.16,1<1.25,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg
[124i386-quarterly-job-01] Installing py39-numpy-1.24.1_4,1...
[124i386-quarterly-job-01] `-- Installing gcc12-12.2.0_6...
[124i386-quarterly-job-01] |   `-- Installing binutils-2.40_4,1...
[124i386-quarterly-job-01] |   | `-- Installing gettext-runtime-0.21.1...
[124i386-quarterly-job-01] |   |   `-- Installing indexinfo-0.3.1...
[124i386-quarterly-job-01] |   |   `-- Extracting indexinfo-0.3.1: .... done
[124i386-quarterly-job-01] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[124i386-quarterly-job-01] |   | `-- Installing zstd-1.5.5...
[124i386-quarterly-job-01] |   |   `-- Installing liblz4-1.9.4,1...
[124i386-quarterly-job-01] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[124i386-quarterly-job-01] |   | `-- Extracting zstd-1.5.5: .......... done
<snip>
[124i386-quarterly-job-01] |   | `-- Installing py39-sphinxcontrib-qthelp-1.0.3...
[124i386-quarterly-job-01] |   | `-- Extracting py39-sphinxcontrib-qthelp-1.0.3: .......... done
[124i386-quarterly-job-01] |   | `-- Installing py39-sphinxcontrib-serializinghtml-1.1.5...
[124i386-quarterly-job-01] |   | `-- Extracting py39-sphinxcontrib-serializinghtml-1.1.5: .......... done
[124i386-quarterly-job-01] |   `-- Extracting py39-sphinx-5.3.0_1,1: .......... done
[124i386-quarterly-job-01] |   `-- Installing py39-sphinx-basic-ng-1.0.0b1...
[124i386-quarterly-job-01] |   `-- Extracting py39-sphinx-basic-ng-1.0.0b1: .......... done
[124i386-quarterly-job-01] `-- Extracting py39-furo-2023.5.20: .......... done
[124i386-quarterly-job-01] `-- Installing py39-sphinx-copybutton-0.5.2...
[124i386-quarterly-job-01] `-- Extracting py39-sphinx-copybutton-0.5.2: .......... done
[124i386-quarterly-job-01] Extracting py39-breathe-4.35.0_1: .......... done
Running fc-cache to build fontconfig cache...
Generating GIO modules cache
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from freetype2-2.12.1_2:

--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:

FREETYPE_PROPERTIES=pcf:no-long-family-names=1

How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from libthai-0.1.29:

--
===>   NOTICE:

The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from dejavu-2.37_1:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
=====
Message from ca_root_nss-3.89.1:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
=====
Message from py39-urllib3-1.26.16,1:

--
Since version 1.25 HTTPS connections are now verified by default which is done
via "cert_reqs = 'CERT_REQUIRED'".  While certificate verification can be
disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on.

Various consumers of net/py-urllib3 already have implemented routines that
either explicitly enable or disable HTTPS certificate verification (e.g. via
configuration settings, CLI arguments, etc.).

Yet it may happen that there are still some consumers which don't explicitly
enable/disable certificate verification for HTTPS connections which could then
lead to errors (as is often the case with self-signed certificates).

In case of an error one should try first to temporarily disable certificate
verification of the problematic urllib3 consumer to see if that approach will
remedy the issue.
===>   py39-libgetar-1.1.3_1 depends on package: py39-breathe>0 - found
===>   Returning to build of py39-libgetar-1.1.3_1
===>   py39-libgetar-1.1.3_1 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.35.pkg
[124i386-quarterly-job-01] Installing py39-cython-0.29.35...
[124i386-quarterly-job-01] Extracting py39-cython-0.29.35: .......... done
===>   py39-libgetar-1.1.3_1 depends on executable: cython-3.9 - found
===>   Returning to build of py39-libgetar-1.1.3_1
===>   py39-libgetar-1.1.3_1 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-libgetar-1.1.3_1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py39-libgetar-1.1.3_1
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py39-libgetar-1.1.3_1
running build
running build_py
creating build
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39
creating build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/fix.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/__init__.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/version.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/read.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/copy.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
copying gtar/cat.py -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
running build_ext
building 'gtar._gtar' extension
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/lz4
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/miniz
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/sqlite3
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DGTAR_NAMESPACE_PARENT=gtar_pymodule -I/usr/local/lib/python3.9/site-packages/numpy/core/include -Ilz4 -Iminiz -Isqlite3 -I/usr/local/include/python3.9 -c gtar/_gtar.cpp -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar/_gtar.o
In file included from gtar/_gtar.cpp:741:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940:
/usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0.	Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DGTAR_NAMESPACE_PARENT=gtar_pymodule -I/usr/local/lib/python3.9/site-packages/numpy/core/include -Ilz4 -Iminiz -Isqlite3 -I/usr/local/include/python3.9 -c gtar/_gtar.cpp -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/gtar/_gtar.o
1.	<eof> parser at end of file
2.	Code generation
3.	Running pass 'Function Pass Manager' on module 'gtar/_gtar.cpp'.
4.	Running pass 'X86 DAG->DAG Instruction Selection' on function '@PyInit__gtar'
#0 0x049f5de4 (/usr/bin/cc+0x49f5de4)
#1 0x049f62c0 (/usr/bin/cc+0x49f62c0)
#2 0x049f40ae (/usr/bin/cc+0x49f40ae)
#3 0x049f8103 (/usr/bin/cc+0x49f8103)
#4 0x05b70969 (/usr/bin/cc+0x5b70969)
cc: error: clang frontend command failed with exit code 139 (use -v to see invocation)
FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303)
Target: i386-unknown-freebsd12.4
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg: 
********************

PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/_gtar-c324b6.cpp
cc: note: diagnostic msg: /tmp/_gtar-c324b6.sh
cc: note: diagnostic msg: 

********************
error: command '/usr/bin/cc' failed with exit code 139
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-libgetar