[package - 124i386-quarterly][science/avogadrolibs] Failed for avogadrolibs-1.97.0_2 in configure
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Date: Tue, 22 Aug 2023 16:12:07 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/avogadrolibs-1.97.0_2.log
Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40
Log:
=>> Building science/avogadrolibs
build started at Tue Aug 22 16:11:37 UTC 2023
port directory: /usr/ports/science/avogadrolibs
package name: avogadrolibs-1.97.0_2
building for: FreeBSD 124i386-quarterly-job-01 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1204000
Job Id: 01
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===> The following configuration options are available for avogadrolibs-1.97.0_2:
HDF5=off: HDF-5 data format support
LIBARCHIVE=on: Enable optional Libarchive features
LIBMSYM=on: Enable optional features using libmsym
MMTF=off: Enable optional features using mmtf
OPENGL=on: 2D/3D rendering support via OpenGL
QT5=on: Qt 5 toolkit support
SPGLIB=on: Enable optional features using spglib
VTK=off: Enable libraries that use VTK
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.97.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
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NINJA_STATUS="[%p %s/%t] " QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.97.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work/.cache HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFL
AGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
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--End PLIST_SUB--
--SUB_LIST--
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--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> avogadrolibs-1.97.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-01] Installing pkg-1.19.2...
[124i386-quarterly-job-01] Extracting pkg-1.19.2: .......... done
===> avogadrolibs-1.97.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of avogadrolibs-1.97.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by avogadrolibs-1.97.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by avogadrolibs-1.97.0_2 for building
=> SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.97.0_GH0.tar.gz.
=> SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz.
=> SHA256 Checksum OK for OpenChemistry-crystals-73a5bbc_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by avogadrolibs-1.97.0_2 for building
===> Extracting for avogadrolibs-1.97.0_2
=> SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.97.0_GH0.tar.gz.
=> SHA256 Checksum OK for OpenChemistry-molecules-b1e16c5_GH0.tar.gz.
=> SHA256 Checksum OK for OpenChemistry-crystals-73a5bbc_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for avogadrolibs-1.97.0_2
===> Applying FreeBSD patches for avogadrolibs-1.97.0_2 from /usr/ports/science/avogadrolibs/files
<snip>
[124i386-quarterly-job-01] `-- Extracting xcb-util-wm-0.4.2: .......... done
[124i386-quarterly-job-01] `-- Installing xdg-utils-1.1.3_2...
[124i386-quarterly-job-01] | `-- Installing hicolor-icon-theme-0.17...
[124i386-quarterly-job-01] | `-- Extracting hicolor-icon-theme-0.17: . done
[124i386-quarterly-job-01] | `-- Installing xprop-1.2.6...
[124i386-quarterly-job-01] | `-- Extracting xprop-1.2.6: ..... done
[124i386-quarterly-job-01] | `-- Installing xset-1.2.5...
[124i386-quarterly-job-01] | | `-- Installing libXmu-1.1.3,1...
[124i386-quarterly-job-01] | | `-- Installing libXt-1.2.1,1...
[124i386-quarterly-job-01] | | `-- Extracting libXt-1.2.1,1: .......... done
[124i386-quarterly-job-01] | | `-- Extracting libXmu-1.1.3,1: .......... done
[124i386-quarterly-job-01] | `-- Extracting xset-1.2.5: ..... done
[124i386-quarterly-job-01] `-- Extracting xdg-utils-1.1.3_2: .......... done
[124i386-quarterly-job-01] `-- Installing xorg-fonts-truetype-7.7_1...
[124i386-quarterly-job-01] | `-- Installing dejavu-2.37_1...
[124i386-quarterly-job-01] | | `-- Installing mkfontscale-1.2.1...
[124i386-quarterly-job-01] | | `-- Installing libfontenc-1.1.4...
[124i386-quarterly-job-01] | | `-- Extracting libfontenc-1.1.4: ......... done
[124i386-quarterly-job-01] | | `-- Extracting mkfontscale-1.2.1: ....... done
[124i386-quarterly-job-01] | `-- Extracting dejavu-2.37_1: .......... done
[124i386-quarterly-job-01] | `-- Installing font-bh-ttf-1.0.3_4...
[124i386-quarterly-job-01] | `-- Extracting font-bh-ttf-1.0.3_4: .......... done
[124i386-quarterly-job-01] | `-- Installing font-misc-ethiopic-1.0.4...
[124i386-quarterly-job-01] | `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[124i386-quarterly-job-01] | `-- Installing font-misc-meltho-1.0.3_4...
[124i386-quarterly-job-01] | `-- Extracting font-misc-meltho-1.0.3_4: .......... done
[124i386-quarterly-job-01] `-- Extracting xorg-fonts-truetype-7.7_1: ... done
[124i386-quarterly-job-01] Extracting qt5-gui-5.15.8p157_1: .......... done
Running fc-cache to build fontconfig cache...
=====
Message from freetype2-2.12.1_2:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from wayland-1.22.0:
--
Wayland requires XDG_RUNTIME_DIR to be defined to a path that will
contain "wayland-%d" unix(4) sockets. This is usually handled by
consolekit2 (via ck-launch-session) or pam_xdg (via login).
=====
Message from libxkbcommon-1.5.0:
--
If arrow keys don't work under X11 switch to legacy rules e.g.,
For sh/bash/ksh/zsh run and (optionally) add into ~/.profile:
export XKB_DEFAULT_RULES=xorg
For csh/tcsh run and (optionally) add into ~/.login:
setenv XKB_DEFAULT_RULES xorg
=====
Message from ca_root_nss-3.89.1:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> avogadrolibs-1.97.0_2 depends on shared library: libQt5Gui.so - found (/usr/local/lib/qt5/libQt5Gui.so)
===> Returning to build of avogadrolibs-1.97.0_2
===> avogadrolibs-1.97.0_2 depends on shared library: libQt5Network.so - found (/usr/local/lib/qt5/libQt5Network.so)
===> avogadrolibs-1.97.0_2 depends on shared library: libQt5Svg.so - not found
===> Installing existing package /packages/All/qt5-svg-5.15.8p8.pkg
[124i386-quarterly-job-01] Installing qt5-svg-5.15.8p8...
[124i386-quarterly-job-01] `-- Installing qt5-widgets-5.15.8p157...
[124i386-quarterly-job-01] `-- Extracting qt5-widgets-5.15.8p157: .......... done
[124i386-quarterly-job-01] Extracting qt5-svg-5.15.8p8: .......... done
===> avogadrolibs-1.97.0_2 depends on shared library: libQt5Svg.so - found (/usr/local/lib/qt5/libQt5Svg.so)
===> Returning to build of avogadrolibs-1.97.0_2
===> avogadrolibs-1.97.0_2 depends on shared library: libQt5Widgets.so - found (/usr/local/lib/qt5/libQt5Widgets.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for avogadrolibs-1.97.0_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/avogadrolibs/work/.build
-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - broken
CMake Error at /usr/local/share/cmake/Modules/CMakeTestCCompiler.cmake:67 (message):
The C compiler
"/usr/bin/cc"
is not able to compile a simple test program.
It fails with the following output:
Change Dir: /wrkdirs/usr/ports/science/avogadrolibs/work/.build/CMakeFiles/CMakeScratch/TryCompile-6lDb4k
Run Build Command(s):/usr/local/bin/ninja -v cmTC_4ac12 && [1/2] /usr/bin/cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -o CMakeFiles/cmTC_4ac12.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/.build/CMakeFiles/CMakeScratch/TryCompile-6lDb4k/testCCompiler.c
FAILED: CMakeFiles/cmTC_4ac12.dir/testCCompiler.c.o
/usr/bin/cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -o CMakeFiles/cmTC_4ac12.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/.build/CMakeFiles/CMakeScratch/TryCompile-6lDb4k/testCCompiler.c
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -o CMakeFiles/cmTC_4ac12.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/.build/CMakeFiles/CMakeScratch/TryCompile-6lDb4k/testCCompiler.c
1. <eof> parser at end of file
2. Code generation
3. Running pass 'Function Pass Manager' on module '/wrkdirs/usr/ports/science/avogadrolibs/work/.build/CMakeFiles/CMakeScratch/TryCompile-6lDb4k/testCCompiler.c'.
4. Running pass 'X86 DAG->DAG Instruction Selection' on function '@main'
#0 0x049f5de4 (/usr/bin/cc+0x49f5de4)
#1 0x049f62c0 (/usr/bin/cc+0x49f62c0)
#2 0x049f40ae (/usr/bin/cc+0x49f40ae)
#3 0x049f8103 (/usr/bin/cc+0x49f8103)
#4 0x05b70969 (/usr/bin/cc+0x5b70969)
cc: error: clang frontend command failed with exit code 139 (use -v to see invocation)
FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303)
Target: i386-unknown-freebsd12.4
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/testCCompiler-665a30.c
cc: note: diagnostic msg: /tmp/testCCompiler-665a30.sh
cc: note: diagnostic msg:
********************
ninja: build stopped: subcommand failed.
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:3 (project)
-- Configuring incomplete, errors occurred!
*** Error code 1
Stop.
make: stopped in /usr/ports/science/avogadrolibs