From nobody Sun Aug 20 10:09:42 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RTBDQ56Z0z4r2DS for ; Sun, 20 Aug 2023 10:09:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RTBDQ2091z3Rkr for ; Sun, 20 Aug 2023 10:09:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1692526182; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=A52KjcHiNHgaqDAbmUQvZbotllgTCZPQeFa1SbeUnZo=; b=FSnojwv7gc+M8suORCWTAdXjOh/wNN62Pzu2cQjFf5PGhXRBD4QLy4mbqnyi2LVJvPlLXm TWbM73GgyfvWEOA+hKQTQ1nOLQRtM1ufndA8MKo9zcqWhF03R5bpWlvGpb2ngBYCWBZoBW WPi05L9s/u6RdSuZL91f5GE+iVciQWGzQOgQs0tErVjgVcqdzWbbWWejJT2N5YLteu7ZhS RrA4UWWFP6Ve81iZwaKn00Eq7Q7Or68vu6LJIhi5/XVBH+c0IgsBOn4PPmhvkbPXta/y+7 ll53JH61qJGr5iXwLIOlB659l/29GMlbCk8wVh4eze2V3zigm/qCmVO/mLiLmg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1692526182; a=rsa-sha256; cv=none; b=rCy3TXg0JHeQBbGQHyreNOlNsZUyN3UCVvG+brhIJgcxY7p//3aA5B0KnimloxVbha7XjQ u8ifxF7gXowBycvzN3/lZ385BSehMSXrzb53nSqKrqMez3fyF9Jnp0G80pTjGvblwBcbh/ 0NxDEeBclLvsD5QfdbU2OE05ntv1VC2d56kgNHlkqJXtxI/GMVFWJWtBlYpWygupFs74W1 GRt1Z4OvrokXVar5rJIIqLjUVJcXGQ4di48g1H4SHQFIL5EMTgv39dUNEwD08UXU/u/jhA HhKiMr1e7DEkl/MlNcNZdvQ9Ae1BH/aJMn+qWXPa/2JaK9YrXuwTKn3UEo2eww== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4RTBDQ0fSdzZsY for ; Sun, 20 Aug 2023 10:09:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 453f by ampere2.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere2.nyi.freebsd.org); Sun, 20 Aug 2023 10:09:42 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - main-armv7-default][biology/btllib] Failed for btllib-1.6.2 in build Date: Sun, 20 Aug 2023 10:09:42 +0000 Message-Id: <64e1e666.453f.3bc14592@ampere2.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pd101ab5189f9_sb231322dbe/logs/btllib-1.6.2.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pd101ab5189f9_sb231322dbe Log: =>> Building biology/btllib build started at Sun Aug 20 10:07:47 UTC 2023 port directory: /usr/ports/biology/btllib package name: btllib-1.6.2 building for: FreeBSD main-armv7-default-job-03 14.0-ALPHA1 FreeBSD 14.0-ALPHA1 1400094 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400094 Job Id: 03 !!! Jail is newer than host. (Jail: 1400094, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400094 UNAME_v=FreeBSD 14.0-ALPHA1 1400094 UNAME_r=14.0-ALPHA1 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix /usr/local --mandir man --infodir share/info --auto-features=enabled -Dpython.bytecompile=-1 -Db_colorout=never --buildtype release --optimization plain --strip _build --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/btllib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/btllib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/btllib/work/.cache HOME=/wrkdirs/usr/ports/biology/btllib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/btllib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/btllib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/btllib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/btllib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/btllib/work/.cache HOME=/wrkdirs/usr/ports/biology/btllib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/btllib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/btllib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/btllib/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="i nstall -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/btllib" EXAMPLESDIR="share/examples/btllib" DATADIR="share/btllib" WWWDIR="www/btllib" ETCDIR="etc/btllib" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/btllib DOCSDIR=/usr/local/share/doc/btllib EXAMPLESDIR=/usr/local/share/examples/btllib WWWDIR=/usr/local/www/btllib ETCDIR=/usr/local/etc/btllib --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=14.0-ALPHA1 OSREL=14.0 OSVERSION=1400094 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> btllib-1.6.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.5.pkg [main-armv7-default-job-03] Installing pkg-1.20.5... [main-armv7-default-job-03] Extracting pkg-1.20.5: .......... done ===> btllib-1.6.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of btllib-1.6.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by btllib-1.6.2 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by btllib-1.6.2 for building => SHA256 Checksum OK for bcgsc-btllib-v1.6.2_GH0.tar.gz. => SHA256 Checksum OK for p-ranav-argparse-15d745f_GH0.tar.gz. => SHA256 Checksum OK for skystrife-cpptoml-fededad_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by btllib-1.6.2 for building ===> Extracting for btllib-1.6.2 => SHA256 Checksum OK for bcgsc-btllib-v1.6.2_GH0.tar.gz. => SHA256 Checksum OK for p-ranav-argparse-15d745f_GH0.tar.gz. => SHA256 Checksum OK for skystrife-cpptoml-fededad_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for btllib-1.6.2 ===> Applying FreeBSD patches for btllib-1.6.2 from /usr/ports/biology/btllib/files =========================================================================== =================================================== ===> btllib-1.6.2 depends on executable: bash - not found ===> btllib-1.6.2 depends on shared library: libsdsl.so - found (/usr/local/lib/libsdsl.so) ===> Returning to build of btllib-1.6.2 =========================================================================== =================================================== ===> Configuring for btllib-1.6.2 LLVM (http://llvm.org/): LLVM version 16.0.6 Optimized build with assertions. WARNING: Recommend using either -Dbuildtype or -Doptimization + -Ddebug. Using both is redundant since they override each other. See: https://mesonbuild.com/Builtin-options.html#build-type-options The Meson build system Version: 1.2.0 Source dir: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2 Build dir: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build Build type: native build Project name: btllib Project version: 1.6.2 C++ compiler for the host machine: c++ (clang 16.0.6 "FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152)") C++ linker for the host machine: c++ ld.lld 16.0.6 Host machine cpu family: arm Host machine cpu: armv7 Configuring config.hpp using configuration Run-time dependency threads found: YES WARNING: OpenMP found but omp.h missing. Run-time dependency OpenMP found: NO (tried system) Executing subproject cpptoml method cmake cpptoml| Found CMake: /usr/local/bin/cmake (3.26.1) | Configuring the build directory with CMake version 3.26.1 | Running CMake with: -G Ninja -DCMAKE_INSTALL_PREFIX=/usr/local | - build directory: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/cpptoml/__CMake_build | - source directory: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/subprojects/cpptoml | - toolchain file: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/cpptoml/__CMake_build/CMakeMesonToolchainFile.cmake | - preload file: /usr/local/lib/python3.9/site-packages/mesonbuild/cmake/data/preload.cmake | - trace args: --trace-expand --trace-format=json-v1 --no-warn-unused-cli --trace-redirect=cmake_trace.txt | - disabled policy warnings: [CMP0025, CMP0047, CMP0056, CMP0060, CMP0065, CMP0066, CMP0067, CMP0082, CMP0089, CMP0102] | Running with expanded trace output on. | Not searching for unused variables given on the command line. | Trace will be written to cmake_trace.txt | -- The C compiler identification is Clang 16.0.6 | -- The CXX compiler identification is Clang 16.0.6 | -- Detecting C compiler ABI info | -- Detecting C compiler ABI info - done | -- Check for working C compiler: /usr/bin/cc - skipped | -- Detecting C compile features | -- Detecting C compile features - done | -- Detecting CXX compiler ABI info | -- Detecting CXX compiler ABI info - done | -- Check for working CXX compiler: /usr/bin/c++ - skipped | -- Detecting CXX compile features | -- Detecting CXX compile features - done | -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) | -- Configuring done (1.7s) | -- Generating done (0.0s) | -- Build files have been written to: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/cpptoml/__CMake_build cpptoml| CMake configuration: SUCCEEDED cpptoml| CMake project cpptoml has 1 build targets. cmake-ast| Processing generated meson AST cmake-ast| Build file: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/cpptoml/meson.build cpptoml| Project name: cpptoml cpptoml| Project version: undefined cpptoml| Build targets in project: 0 cpptoml| Subproject cpptoml finished. Found pkg-config: /usr/local/bin/pkgconf (1.8.1) Run-time dependency sdsl-lite found: YES 2.1.0 Executing subproject argparse method cmake | Configuring the build directory with CMake version 3.26.1 | Running CMake with: -G Ninja -DCMAKE_INSTALL_PREFIX=/usr/local | - build directory: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/argparse/__CMake_build | - source directory: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/subprojects/argparse | - toolchain file: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/argparse/__CMake_build/CMakeMesonToolchainFile.cmake | - preload file: /usr/local/lib/python3.9/site-packages/mesonbuild/cmake/data/preload.cmake | - trace args: --trace-expand --trace-format=json-v1 --no-warn-unused-cli --trace-redirect=cmake_trace.txt | - disabled policy warnings: [CMP0025, CMP0047, CMP0056, CMP0060, CMP0065, CMP0066, CMP0067, CMP0082, CMP0089, CMP0102] | Running with expanded trace output on. | Not searching for unused variables given on the command line. | Trace will be written to cmake_trace.txt | -- The CXX compiler identification is Clang 16.0.6 | -- Detecting CXX compiler ABI info | -- Detecting CXX compiler ABI info - done | -- Check for working CXX compiler: /usr/bin/c++ - skipped | -- Detecting CXX compile features | -- Detecting CXX compile features - done | -- Configuring done (1.1s) | -- Generating done (0.0s) | -- Build files have been written to: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/argparse/__CMake_build argparse| CMake configuration: SUCCEEDED argparse| CMake project argparse has 1 build targets. cmake-ast| Processing generated meson AST cmake-ast| Build file: /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/subprojects/argparse/meson.build argparse| Project name: argparse argparse| Project version: undefined argparse| Build targets in project: 0 argparse| Subproject argparse finished. Program samtools found: YES (/usr/local/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program gcovr found: NO Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in future releases of meson. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/wrkdirs/usr/ports/biology/btllib/work/.bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 11 btllib 1.6.2 Subprojects argparse : YES cpptoml : YES User defined options auto_features : enabled buildtype : release infodir : share/info mandir : man optimization : plain prefix : /usr/local strip : True python.bytecompile: -1 b_colorout : never Found ninja-1.11.1 at /usr/local/bin/ninja WARNING: Need gcovr or lcov/genhtml to generate any coverage reports WARNING: Running the setup command as `meson [options]` instead of `meson setup [options]` is ambiguous and deprecated. =========================================================================== =================================================== ===> Building for btllib-1.6.2 [ 4% 2/25] c++ -Ilibbtllib.so.p -I. -I.. -Iinclude -I../include -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -MD -MQ libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_multiline_fasta_module.cpp.o -MF libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_multiline_fasta_module.cpp.o.d -o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_multiline_fasta_module.cpp.o -c /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/src/btllib/seq_reader_multiline_fasta_module.cpp [ 8% 3/25] c++ -Ilibbtllib.so.p -I. -I.. -Iinclude -I../include -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -MD -MQ 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libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_sam_module.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_aahash.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_data_stream.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_writer.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_randseq.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2 _src_btllib_process_pipeline.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_nthash.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_util.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_bloom_filter.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_status.cpp.o libbtllib.so.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_src_btllib_cstring.cpp.o --coverage -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libbtllib.so -ldl -lstdc++ -lm -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/lib -Wl,-rpath-link,/usr/local/lib - pthread /usr/local/lib/libsdsl.so /usr/local/lib/libdivsufsort.so /usr/local/lib/libdivsufsort64.so -Wl,--end-group [ 80% 21/25] /usr/local/bin/meson --internal symbolextractor /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build libbtllib.so libbtllib.so libbtllib.so.p/libbtllib.so.symbols [ 84% 22/25] c++ -o recipes/indexlr recipes/indexlr.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_indexlr.cpp.o --coverage -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,--start-group -ldl -lstdc++ -lm -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing '-Wl,-rpath,$ORIGIN/..:/usr/local/lib' -Wl,-rpath-link,/wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/_build/ -Wl,-rpath-link,/usr/local/lib libbtllib.so -pthread /usr/local/lib/libsdsl.so /usr/local/lib/libdivsufsort.so /usr/local/lib/libdivsufsort64.so -Wl,--end-group [ 88% 23/25] c++ -Irecipes/randseq.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I../subprojects/argparse/include -Isubprojects/argparse/__CMake_build -I../subprojects/argparse/__CMake_build -Isubprojects/argparse -I../subprojects/argparse -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -MD -MQ recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o -MF recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o.d -o recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o -c /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/randseq.cpp FAILED: recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o c++ -Irecipes/randseq.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I../subprojects/argparse/include -Isubprojects/argparse/__CMake_build -I../subprojects/argparse/__CMake_build -Isubprojects/argparse -I../subprojects/argparse -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -MD -MQ recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o -MF recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o.d -o recipes/randseq.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_randseq.cpp.o -c /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/randseq.cpp /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/randseq.cpp:9:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. [ 92% 23/25] c++ -Irecipes/mi_bf_generate.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -MD -MQ recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o -MF recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o.d -o recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o -c /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/mi_bloom_filter.cpp FAILED: recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o c++ -Irecipes/mi_bf_generate.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -I../subprojects/cpptoml/include -Isubprojects/cpptoml/__CMake_build -I../subprojects/cpptoml/__CMake_build -Isubprojects/cpptoml -I../subprojects/cpptoml -I/usr/local/include -fno-color-diagnostics --coverage -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -MD -MQ recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o -MF recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o.d -o recipes/mi_bf_generate.p/_wrkdirs_usr_ports_biology_btllib_work_btllib-1.6.2_recipes_mi_bloom_filter.cpp.o -c /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/mi_bloom_filter.cpp In file included from /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/mi_bloom_filter.cpp:1: In file included from ../include/btllib/mi_bloom_filter.hpp:12: In file included from /usr/local/include/sdsl/bit_vector_il.hpp:25: In file included from /usr/local/include/sdsl/int_vector.hpp:26: /usr/local/include/sdsl/util.hpp:492:19: warning: variable 'vals' set but not used [-Wunused-but-set-variable] uint64_t n=0, vals=0; ^ /wrkdirs/usr/ports/biology/btllib/work/btllib-1.6.2/recipes/mi_bloom_filter.cpp:8:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 warning and 1 error generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/btllib