[package - main-amd64-default][biology/lamarc] Failed for lamarc-2.1.8_1,1 in build
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Date: Fri, 11 Aug 2023 09:23:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p522c0071ba4d_sd4a8f5bf13/logs/lamarc-2.1.8_1,1.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p522c0071ba4d_sd4a8f5bf13
Log:
=>> Building biology/lamarc
build started at Fri Aug 11 09:21:07 UTC 2023
port directory: /usr/ports/biology/lamarc
package name: lamarc-2.1.8_1,1
building for: FreeBSD main-amd64-default-job-07 14.0-CURRENT FreeBSD 14.0-CURRENT 1400094 amd64
maintained by: ports@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1400094
Job Id: 07
!!! Jail is newer than host. (Jail: 1400094, Host: 1400089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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===> The following configuration options are available for lamarc-2.1.8_1,1:
DOCS=on: Build and/or install documentation
WXGTK=off: wxGTK GUI toolkit support
===> Use 'make config' to modify these settings
---End OPTIONS List---
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ports@FreeBSD.org
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--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
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=======================<phase: check-sanity >============================
===> NOTICE:
The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.5.pkg
[main-amd64-default-job-07] Installing pkg-1.20.5...
[main-amd64-default-job-07] Extracting pkg-1.20.5: .......... done
===> lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of lamarc-2.1.8_1,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
<snip>
virtual void ModifyEvents(const ForceSummary& fs,
^
./src/force/force.h:549:61: warning: unused parameter 'mystatus' [-Wunused-parameter]
virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); };
^
./src/force/force.h:583:61: warning: unused parameter 'mystatus' [-Wunused-parameter]
virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); };
^
In file included from src/report/xml_report.cpp:18:
In file included from ./src/datalike/region.h:38:
./src/tree/newick.h:46:37: warning: unused parameter 'stump' [-Wunused-parameter]
virtual void ToLamarcTree(Tree& stump) { assert(false); }; // instantiating NULL tree
^
In file included from src/report/xml_report.cpp:19:
./src/report/reportpage.h:29:1: warning: class 'PlotStruct' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
class PlotStruct;
^
./src/postlike/plotstat.h:26:8: note: previous use is here
struct PlotStruct
^
./src/report/reportpage.h:29:1: note: did you mean struct here?
class PlotStruct;
^~~~~
struct
./src/report/reportpage.h:212:10: warning: 'ProfPage::PrintTable' hides overloaded virtual function [-Woverloaded-virtual]
void PrintTable(StringVec3d& wrappedtable);
^
./src/report/reportpage.h:106:18: note: hidden overloaded virtual function 'ReportPage::PrintTable' declared here: different number of parameters (4 vs 1)
virtual void PrintTable(vector<string> &colhdr, StringVec2d &rowhdr,
^
src/report/xml_report.cpp:39:36: warning: unused parameter 'tag' [-Wunused-parameter]
force_type tag,
^
--- lamarc-reportpage.o ---
72 warnings generated.
mv -f .deps/lamarc-reportpage.Tpo .deps/lamarc-reportpage.Po
--- lamarc-mathx.o ---
c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++98 -MT lamarc-mathx.o -MD -MP -MF .deps/lamarc-mathx.Tpo -c -o lamarc-mathx.o `test -f 'src/tools/mathx.cpp' || echo './'`src/tools/mathx.cpp
--- lamarc-xml_report.o ---
76 warnings generated.
mv -f .deps/lamarc-xml_report.Tpo .deps/lamarc-xml_report.Po
--- lamarc-random.o ---
c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++98 -MT lamarc-random.o -MD -MP -MF .deps/lamarc-random.Tpo -c -o lamarc-random.o `test -f 'src/tools/random.cpp' || echo './'`src/tools/random.cpp
In file included from src/tools/random.cpp:20:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:42:
In file included from ./boost/random/ranlux.hpp:21:
./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' [-Wunused-parameter]
static bool validation(result_type x) { return true; } // dummy
^
In file included from src/tools/random.cpp:20:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:53:
In file included from ./boost/random/random_number_generator.hpp:22:
In file included from ./boost/random/uniform_int.hpp:26:
./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter]
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
^
--- lamarc-mathx.o ---
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:42:
In file included from ./boost/random/ranlux.hpp:21:
./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' [-Wunused-parameter]
static bool validation(result_type x) { return true; } // dummy
^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:53:
In file included from ./boost/random/random_number_generator.hpp:22:
In file included from ./boost/random/uniform_int.hpp:26:
./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter]
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:24:
In file included from ./src/control/regiongammainfo.h:16:
./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_identical); };
^
./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
--- lamarc-random.o ---
2 warnings generated.
mv -f .deps/lamarc-random.Tpo .deps/lamarc-random.Po
--- lamarc-rangex.o ---
c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++98 -MT lamarc-rangex.o -MD -MP -MF .deps/lamarc-rangex.Tpo -c -o lamarc-rangex.o `test -f 'src/tools/rangex.cpp' || echo './'`src/tools/rangex.cpp
--- lamarc-mathx.o ---
src/tools/mathx.cpp:781:12: error: no matching function for call to 'make_pair'
return std::make_pair<DoubleVec1d, DoubleVec2d>(eigvals, eigvecs);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/__utility/pair.h:542:1: note: candidate function template not viable: expects an rvalue for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^
14 warnings and 1 error generated.
*** [lamarc-mathx.o] Error code 1
make[1]: stopped in /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8
--- lamarc-rangex.o ---
In file included from src/tools/rangex.cpp:17:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:42:
In file included from ./boost/random/ranlux.hpp:21:
./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' [-Wunused-parameter]
static bool validation(result_type x) { return true; } // dummy
^
In file included from src/tools/rangex.cpp:17:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:53:
In file included from ./boost/random/random_number_generator.hpp:22:
In file included from ./boost/random/uniform_int.hpp:26:
./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter]
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
^
In file included from src/tools/rangex.cpp:17:
In file included from ./src/control/registry.h:24:
In file included from ./src/control/regiongammainfo.h:16:
./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_identical); };
^
./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
14 warnings generated.
mv -f .deps/lamarc-rangex.Tpo .deps/lamarc-rangex.Po
1 error
make[1]: stopped in /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/lamarc