[package - 131releng-armv7-quarterly][devel/R-cran-rJava] Failed for R-cran-rJava-1.0.6_1 in stage
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Date: Thu, 27 Apr 2023 03:03:57 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/60e7cbc83321/logs/R-cran-rJava-1.0.6_1.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=60e7cbc83321 Log: =>> Building devel/R-cran-rJava build started at Thu Apr 27 03:03:09 UTC 2023 port directory: /usr/ports/devel/R-cran-rJava package name: R-cran-rJava-1.0.6_1 building for: FreeBSD 131releng-armv7-quarterly-job-12 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm maintained by: thierry@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p7 1301000 UNAME_r=13.1-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thierry@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.cache HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- JAVA_HOME=/usr/local/openjdk8 JAVA=/usr/local/openjdk8/bin/java JAVAC=/usr/local/openjdk8/bin/javac JAVAH=/usr/local/openjdk8/bin/javah JAR=/usr/local/openjdk8/bin/jar LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/armv7/server" JAVA_LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/armv7/server" JAVA_LIBS="-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread" JAVA_CPPFLAGS="-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd" F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.cache HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-rJava/work/. bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=""-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server " -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CX XFLAGS="-O2 -pipe -fstack-protector-strong -! fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/rJava OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/rJava" EXAMPLESDIR="share/examples/rJava" DATADIR="share/rJava" WWWDIR="www/rJava" ETCDIR="etc/rJava" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rJava DOCSDIR=/usr/local/share/doc/rJava EXAMPLESDIR=/usr/local/share/examples/rJava WWWDIR=/usr/local/www/rJava ETCDIR=/usr/local/etc/rJava --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p7 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [131releng-armv7-quarterly-job-12] Installing pkg-1.19.1_1... [131releng-armv7-quarterly-job-12] Extracting pkg-1.19.1_1: .......... done ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-rJava-1.0.6_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building => SHA256 Checksum OK for rJava_1.0-6.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.6_1 for building ===> Extracting for R-cran-rJava-1.0.6_1 => SHA256 Checksum OK for rJava_1.0-6.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-rJava-1.0.6_1 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.362.09.1_1.pkg [131releng-armv7-quarterly-job-12] Installing openjdk8-8.362.09.1_1... [131releng-armv7-quarterly-job-12] `-- Installing alsa-lib-1.2.2_1... [131releng-armv7-quarterly-job-12] `-- Extracting alsa-lib-1.2.2_1: .......... done [131releng-armv7-quarterly-job-12] `-- Installing dejavu-2.37_1... [131releng-armv7-quarterly-job-12] | `-- Installing fontconfig-2.14.2,1... [131releng-armv7-quarterly-job-12] | | `-- Installing expat-2.5.0... [131releng-armv7-quarterly-job-12] | | `-- Extracting expat-2.5.0: .......... done [131releng-armv7-quarterly-job-12] | | `-- Installing freetype2-2.12.1_2... [131releng-armv7-quarterly-job-12] | | `-- Installing brotli-1.0.9,1... [131releng-armv7-quarterly-job-12] | | `-- Extracting brotli-1.0.9,1: .......... done [131releng-armv7-quarterly-job-12] | | `-- Installing png-1.6.39... [131releng-armv7-quarterly-job-12] | | `-- Extracting png-1.6.39: .......... done [131releng-armv7-quarterly-job-12] | | `-- Extracting freetype2-2.12.1_2: .......... done [131releng-armv7-quarterly-job-12] | `-- Extracting fontconfig-2.14.2,1: .......... done <snip> [131releng-armv7-quarterly-job-12] `-- Installing libXScrnSaver-1.2.4... [131releng-armv7-quarterly-job-12] `-- Extracting libXScrnSaver-1.2.4: .......... done [131releng-armv7-quarterly-job-12] `-- Installing libXmu-1.1.3,1... [131releng-armv7-quarterly-job-12] `-- Extracting libXmu-1.1.3,1: .......... done [131releng-armv7-quarterly-job-12] `-- Installing pango-1.50.9_1... [131releng-armv7-quarterly-job-12] | `-- Installing encodings-1.0.5,1... [131releng-armv7-quarterly-job-12] | `-- Extracting encodings-1.0.5,1: .......... done [131releng-armv7-quarterly-job-12] | `-- Installing fribidi-1.0.12... [131releng-armv7-quarterly-job-12] | `-- Extracting fribidi-1.0.12: .......... done [131releng-armv7-quarterly-job-12] | `-- Installing libXft-2.3.7... [131releng-armv7-quarterly-job-12] | `-- Extracting libXft-2.3.7: .......... done [131releng-armv7-quarterly-job-12] | `-- Installing libthai-0.1.29... [131releng-armv7-quarterly-job-12] | | `-- Installing libdatrie-0.2.13_1... [131releng-armv7-quarterly-job-12] | | `-- Extracting libdatrie-0.2.13_1: .......... done [131releng-armv7-quarterly-job-12] | `-- Extracting libthai-0.1.29: .......... done [131releng-armv7-quarterly-job-12] | `-- Installing xorg-fonts-truetype-7.7_1... [131releng-armv7-quarterly-job-12] | | `-- Installing font-bh-ttf-1.0.3_4... [131releng-armv7-quarterly-job-12] | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done [131releng-armv7-quarterly-job-12] | | `-- Installing font-misc-ethiopic-1.0.4... [131releng-armv7-quarterly-job-12] | | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [131releng-armv7-quarterly-job-12] | | `-- Installing font-misc-meltho-1.0.3_4... [131releng-armv7-quarterly-job-12] | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done [131releng-armv7-quarterly-job-12] | `-- Extracting xorg-fonts-truetype-7.7_1: ... done [131releng-armv7-quarterly-job-12] `-- Extracting pango-1.50.9_1: .......... done [131releng-armv7-quarterly-job-12] `-- Installing tcl86-8.6.13... [131releng-armv7-quarterly-job-12] `-- Extracting tcl86-8.6.13: .......... done [131releng-armv7-quarterly-job-12] `-- Installing tk86-8.6.13... [131releng-armv7-quarterly-job-12] `-- Extracting tk86-8.6.13: .......... done [131releng-armv7-quarterly-job-12] Extracting R-4.2.3: .......... done Running fc-cache to build fontconfig cache... Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. ===== Message from python39-3.9.16_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from ca_root_nss-3.89: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from ghostscript9-agpl-base-9.56.1_8: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-rJava-1.0.6_1 ===> R-cran-rJava-1.0.6_1 depends on executable: gfortran12 - found ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> R-cran-rJava-1.0.6_1 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so) ===> R-cran-rJava-1.0.6_1 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-rJava-1.0.6_1 /usr/local/bin/R CMD javareconf -e exit Java interpreter : /usr/local/bin/java Java version : 1.8.0_362 Java home path : /usr/local/openjdk8/jre Java compiler : /usr/local/bin/javac Java headers gen.: /usr/local/bin/javah Java archive tool: /usr/local/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/freebsd detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm -lpthread gmake[1]: Entering directory '/tmp/Rjavareconf.13lq0o' cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c conftest.c -o conftest.o cc -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -o conftest.so conftest.o -L/usr/local/openjdk8/jre/lib/arm/server -ljvm -lpthread -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/tmp/Rjavareconf.13lq0o' The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH Running: exit =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.6_1 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.6_1 depends on executable: gfortran12 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-rJava-1.0.6_1 ===> Generating temporary packing list * installing *source* package 'rJava' ... ** package 'rJava' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether cc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/local/openjdk8/bin/java' archiver : '/usr/local/openjdk8/bin/jar' compiler : '/usr/local/openjdk8/bin/javac' header prep.: '/usr/local/openjdk8/bin/javah' cpp flags : '-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd' java libs : '-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... configure: error: Cannot compile a simple JNI program. See config.log for details. Make sure you have Java Development Kit installed and correctly registered in R. If in doubt, re-run "R CMD javareconf" as root. ERROR: configuration failed for package 'rJava' * removing '/wrkdirs/usr/ports/devel/R-cran-rJava/work/stage/usr/local/lib/R/library/rJava' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-rJava