[package - 131releng-armv7-quarterly][science/py-pyscf] Failed for py39-pyscf-2.2.0 in build
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Date: Sun, 16 Apr 2023 00:42:42 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/7556984ae7d8/logs/py39-pyscf-2.2.0.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=7556984ae7d8 Log: =>> Building science/py-pyscf build started at Sun Apr 16 00:42:07 UTC 2023 port directory: /usr/ports/science/py-pyscf package name: py39-pyscf-2.2.0 building for: FreeBSD 131releng-armv7-quarterly-job-03 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p7 1301000 UNAME_r=13.1-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O 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WWWDIR="www/pyscf" ETCDIR="etc/pyscf" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyscf DOCSDIR=/usr/local/share/doc/pyscf EXAMPLESDIR=/usr/local/share/examples/pyscf WWWDIR=/usr/local/www/pyscf ETCDIR=/usr/local/etc/pyscf --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p7 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD2CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py39-pyscf-2.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [131releng-armv7-quarterly-job-03] Installing pkg-1.19.1_1... [131releng-armv7-quarterly-job-03] Extracting pkg-1.19.1_1: .......... done ===> py39-pyscf-2.2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-pyscf-2.2.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-pyscf-2.2.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-pyscf-2.2.0 for building => SHA256 Checksum OK for pyscf-pyscf-v2.2.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py39-pyscf-2.2.0 for building ===> Extracting for py39-pyscf-2.2.0 => SHA256 Checksum OK for pyscf-pyscf-v2.2.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py39-pyscf-2.2.0 ===> Applying FreeBSD patches for py39-pyscf-2.2.0 from /usr/ports/science/py-pyscf/files =========================================================================== =======================<phase: build-depends >============================ ===> py39-pyscf-2.2.0 depends on package: py39-numpy>=1.16,1<1.25,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.24.1,1.pkg [131releng-armv7-quarterly-job-03] Installing py39-numpy-1.24.1,1... [131releng-armv7-quarterly-job-03] `-- Installing gcc12-12.2.0_5... [131releng-armv7-quarterly-job-03] | `-- Installing binutils-2.40_2,1... [131releng-armv7-quarterly-job-03] | | `-- Installing gettext-runtime-0.21.1... [131releng-armv7-quarterly-job-03] | | `-- Installing indexinfo-0.3.1... [131releng-armv7-quarterly-job-03] | | `-- Extracting indexinfo-0.3.1: .... done [131releng-armv7-quarterly-job-03] | | `-- Extracting gettext-runtime-0.21.1: .......... done [131releng-armv7-quarterly-job-03] | | `-- Installing zstd-1.5.4... [131releng-armv7-quarterly-job-03] | | `-- Installing liblz4-1.9.4,1... [131releng-armv7-quarterly-job-03] | | `-- Extracting liblz4-1.9.4,1: .......... done [131releng-armv7-quarterly-job-03] | | `-- Extracting zstd-1.5.4: .......... done [131releng-armv7-quarterly-job-03] | `-- Extracting binutils-2.40_2,1: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing gmp-6.2.1... [131releng-armv7-quarterly-job-03] | `-- Extracting gmp-6.2.1: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing mpc-1.2.1... [131releng-armv7-quarterly-job-03] | | `-- Installing mpfr-4.2.0,1... [131releng-armv7-quarterly-job-03] | | `-- Extracting mpfr-4.2.0,1: .......... done [131releng-armv7-quarterly-job-03] | `-- Extracting mpc-1.2.1: ......... done [131releng-armv7-quarterly-job-03] `-- Extracting gcc12-12.2.0_5: .......... done [131releng-armv7-quarterly-job-03] `-- Installing openblas-0.3.20,1... [131releng-armv7-quarterly-job-03] `-- Extracting openblas-0.3.20,1: .......... done [131releng-armv7-quarterly-job-03] `-- Installing py39-setuptools-63.1.0... [131releng-armv7-quarterly-job-03] | `-- Installing python39-3.9.16_2... [131releng-armv7-quarterly-job-03] | | `-- Installing libffi-3.4.4... [131releng-armv7-quarterly-job-03] | | `-- Extracting libffi-3.4.4: .......... done [131releng-armv7-quarterly-job-03] | | `-- Installing mpdecimal-2.5.1... [131releng-armv7-quarterly-job-03] | | `-- Extracting mpdecimal-2.5.1: .......... done [131releng-armv7-quarterly-job-03] | | `-- Installing readline-8.2.0... [131releng-armv7-quarterly-job-03] | | `-- Extracting readline-8.2.0: .......... done [131releng-armv7-quarterly-job-03] | `-- Extracting python39-3.9.16_2: .......... done [131releng-armv7-quarterly-job-03] `-- Extracting py39-setuptools-63.1.0: .......... done [131releng-armv7-quarterly-job-03] `-- Installing suitesparse-umfpack-6.1.0... [131releng-armv7-quarterly-job-03] | `-- Installing metis-5.1.0_9... [131releng-armv7-quarterly-job-03] | `-- Extracting metis-5.1.0_9: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing suitesparse-amd-3.0.3... [131releng-armv7-quarterly-job-03] | | `-- Installing suitesparse-config-7.0.1... [131releng-armv7-quarterly-job-03] | | `-- Extracting suitesparse-config-7.0.1: .......... done [131releng-armv7-quarterly-job-03] | `-- Extracting suitesparse-amd-3.0.3: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing suitesparse-camd-3.0.3... [131releng-armv7-quarterly-job-03] | `-- Extracting suitesparse-camd-3.0.3: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing suitesparse-ccolamd-3.0.3... [131releng-armv7-quarterly-job-03] | `-- Extracting suitesparse-ccolamd-3.0.3: .......... done [131releng-armv7-quarterly-job-03] | `-- Installing suitesparse-cholmod-4.0.3... [131releng-armv7-quarterly-job-03] | | `-- Installing suitesparse-colamd-3.0.3... [131releng-armv7-quarterly-job-03] | | `-- Extracting suitesparse-colamd-3.0.3: .......... done [131releng-armv7-quarterly-job-03] | `-- Extracting suitesparse-cholmod-4.0.3: .......... done [131releng-armv7-quarterly-job-03] `-- Extracting suitesparse-umfpack-6.1.0: .......... done [131releng-armv7-quarterly-job-03] Extracting py39-numpy-1.24.1,1: .......... done ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.16_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py39-pyscf-2.2.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on package: py39-scipy>0 - not found ===> Installing existing package /packages/All/py39-scipy-1.10.0.pkg [131releng-armv7-quarterly-job-03] Installing py39-scipy-1.10.0... [131releng-armv7-quarterly-job-03] `-- Installing blas-3.11.0... [131releng-armv7-quarterly-job-03] `-- Extracting blas-3.11.0: ........ done [131releng-armv7-quarterly-job-03] Extracting py39-scipy-1.10.0: .......... done ===> py39-pyscf-2.2.0 depends on package: py39-scipy>0 - found ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on package: py39-h5py>=2.7 - not found ===> Installing existing package /packages/All/py39-h5py-3.8.0.pkg [131releng-armv7-quarterly-job-03] Installing py39-h5py-3.8.0... [131releng-armv7-quarterly-job-03] `-- Installing hdf5-1.12.2_1,1... [131releng-armv7-quarterly-job-03] | `-- Installing libaec-1.0.6... [131releng-armv7-quarterly-job-03] | `-- Extracting libaec-1.0.6: .......... done [131releng-armv7-quarterly-job-03] `-- Extracting hdf5-1.12.2_1,1: .......... done [131releng-armv7-quarterly-job-03] Extracting py39-h5py-3.8.0: .......... done ===> py39-pyscf-2.2.0 depends on package: py39-h5py>=2.7 - found ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-core-3.25.1.pkg [131releng-armv7-quarterly-job-03] Installing cmake-core-3.25.1... [131releng-armv7-quarterly-job-03] `-- Installing expat-2.5.0... [131releng-armv7-quarterly-job-03] `-- Extracting expat-2.5.0: .......... done [131releng-armv7-quarterly-job-03] `-- Installing jsoncpp-1.9.5... [131releng-armv7-quarterly-job-03] `-- Extracting jsoncpp-1.9.5: .......... done [131releng-armv7-quarterly-job-03] `-- Installing libuv-1.44.2... [131releng-armv7-quarterly-job-03] `-- Extracting libuv-1.44.2: .......... done [131releng-armv7-quarterly-job-03] `-- Installing rhash-1.4.3... [131releng-armv7-quarterly-job-03] `-- Extracting rhash-1.4.3: .......... done [131releng-armv7-quarterly-job-03] Extracting cmake-core-3.25.1: .......... done ===> py39-pyscf-2.2.0 depends on executable: cmake - found ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.3_2.pkg [131releng-armv7-quarterly-job-03] Installing gmake-4.3_2... [131releng-armv7-quarterly-job-03] Extracting gmake-4.3_2: .......... done ===> py39-pyscf-2.2.0 depends on executable: gmake - found ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on executable: gfortran12 - found ===> py39-pyscf-2.2.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyscf-2.2.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-pyscf-2.2.0 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> py39-pyscf-2.2.0 depends on shared library: libcint.so - not found ===> Installing existing package /packages/All/libcint-5.3.0.pkg [131releng-armv7-quarterly-job-03] Installing libcint-5.3.0... [131releng-armv7-quarterly-job-03] Extracting libcint-5.3.0: ........ done ===> py39-pyscf-2.2.0 depends on shared library: libcint.so - found (/usr/local/lib/libcint.so) ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on shared library: libxc.so - not found ===> Installing existing package /packages/All/libxc-6.0.0.pkg [131releng-armv7-quarterly-job-03] Installing libxc-6.0.0... [131releng-armv7-quarterly-job-03] Extracting libxc-6.0.0: .......... done ===> py39-pyscf-2.2.0 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on shared library: libxcfun.so - not found ===> Installing existing package /packages/All/xcfun-2.1.1.1.pkg [131releng-armv7-quarterly-job-03] Installing xcfun-2.1.1.1... [131releng-armv7-quarterly-job-03] Extracting xcfun-2.1.1.1: .......... done ===> py39-pyscf-2.2.0 depends on shared library: libxcfun.so - found (/usr/local/lib/libxcfun.so) ===> Returning to build of py39-pyscf-2.2.0 ===> py39-pyscf-2.2.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for py39-pyscf-2.2.0 running config =========================================================================== =======================<phase: build >============================ ===> Building for py39-pyscf-2.2.0 running build running build_ext Configuring extensions cmake -S/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/pyscf/lib -Bbuild/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39 -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for ffsll -- Looking for ffsll - found -- BLAS libraries: /usr/local/lib/libopenblas.so CMake Error at /wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeTmp/CMakeLists.txt:15 (add_executable): No SOURCES given to target: cmTC_5e067 CMake Error at /usr/local/share/cmake/Modules/FindOpenMP.cmake:261 (try_compile): Failed to generate test project build system. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindOpenMP.cmake:537 (_OPENMP_GET_FLAGS) CMakeLists.txt:97 (find_package) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/py-pyscf/work-py39/pyscf-2.2.0/build/temp.freebsd-13.1-RELEASE-p7-arm-cpython-39/CMakeFiles/CMakeError.log". error: command '/usr/local/bin/cmake' failed with exit code 1 *** Error code 1 Stop. make: stopped in /usr/ports/science/py-pyscf