[package - 124arm64-quarterly][science/minc2] Failed for minc2-2.2.00_12,1 in build
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Date: Fri, 14 Apr 2023 17:52:31 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/124arm64-quarterly/7556984ae7d8/logs/minc2-2.2.00_12,1.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=124arm64-quarterly&build=7556984ae7d8
Log:
=>> Building science/minc2
build started at Fri Apr 14 17:50:10 UTC 2023
port directory: /usr/ports/science/minc2
package name: minc2-2.2.00_12,1
building for: FreeBSD 124arm64-quarterly-job-13 12.4-RELEASE-p2 FreeBSD 12.4-RELEASE-p2 arm64
maintained by: ports@FreeBSD.org
Makefile ident:
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Host OSVERSION: 1400073
Jail OSVERSION: 1204000
Job Id: 13
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# XXX: We really need this but cannot use it while 'make checksum' does not
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--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> minc2-2.2.00_12,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[124arm64-quarterly-job-13] Installing pkg-1.19.1_1...
[124arm64-quarterly-job-13] Extracting pkg-1.19.1_1: .......... done
===> minc2-2.2.00_12,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of minc2-2.2.00_12,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===> Fetching all distfiles required by minc2-2.2.00_12,1 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The minc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
<snip>
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/transformtags.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/transformtags.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/transformtags progs/xfm/transformtags.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfm2def.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfm2def.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfm2def progs/xfm/xfm2def.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfmconcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfmconcat.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfmconcat progs/xfm/xfmconcat.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/xfm/xfminvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfminvert.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfminvert progs/xfm/xfminvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/mincconvert/mincconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincconvert/mincconvert.o -MD -MP -MF $depbase.Tpo -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c &&\
mv -f $depbase.Tpo $depbase.Po
progs/mincconvert/mincconvert.c:214:14: warning: implicit declaration of function 'micreatex' is invalid in C99 [-Wimplicit-function-declaration]
new_fd = micreatex(new_fname, flags, &opts);
^
1 warning generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincconvert progs/mincconvert/mincconvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo progs/mincdump/mincdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/mincdump.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo progs/mincdump/vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/vardata.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo progs/mincdump/dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/dumplib.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo conversion/ecattominc/ecattominc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecattominc.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/ecattominc/insertblood.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/insertblood.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/ecattominc/ecat_file.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecat_file.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/ecattominc/ecat_file.c:1025:7: warning: implicit declaration of function 'get_int32_value' is invalid in C99 [-Wimplicit-function-declaration]
get_int32_value(&dirblock[offset], &value);
^
1 warning generated.
depbase=`echo conversion/ecattominc/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/ecattominc/machine_indep.c:20:22: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
*(short int *)to = ntohs(short_value);
^
conversion/ecattominc/machine_indep.c:27:21: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration]
*(long int *)to = ntohl(long_value);
^
conversion/ecattominc/machine_indep.c:35:20: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration]
*(int32_t *)to = ntohl(int32_value);
^
3 warnings generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
depbase=`echo conversion/minctoecat/minctoecat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/minctoecat.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/minctoecat/ecat_write.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/ecat_write.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo conversion/minctoecat/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c &&\
mv -f $depbase.Tpo $depbase.Po
conversion/minctoecat/machine_indep.c:28:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swab(from, to, length);
^
conversion/minctoecat/machine_indep.c:41:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swaw((short*)from,to,length);
^
conversion/minctoecat/machine_indep.c:41:21: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) swaw((short*)from,to,length);
^
conversion/minctoecat/machine_indep.c:132:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1)
^
conversion/minctoecat/machine_indep.c:142:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp, (short*)(dptr+j), 256);
^
conversion/minctoecat/machine_indep.c:168:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp, (short*)(dptr+j), 256);
^
conversion/minctoecat/machine_indep.c:184:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
read_matrix_data( fptr, strtblk, nblks, dptr, dtype)
^
conversion/minctoecat/machine_indep.c:191:8: warning: implicit declaration of function 'mat_rblk' is invalid in C99 [-Wimplicit-function-declaration]
err = mat_rblk( fptr, strtblk, dptr, nblks);
^
conversion/minctoecat/machine_indep.c:196:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
write_matrix_data( fptr, strtblk, nblks, dptr, dtype)
^
conversion/minctoecat/machine_indep.c:215:8: warning: implicit declaration of function 'mat_wblk' is invalid in C99 [-Wimplicit-function-declaration]
if ( mat_wblk( fptr, strtblk, dptr, nblks) < 0) error_flag++;
^
conversion/minctoecat/machine_indep.c:219:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) == 1) {
^
conversion/minctoecat/machine_indep.c:231:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw( (short*)bufr1, (short*)bufr2, 256);
^
conversion/minctoecat/machine_indep.c:240:33: warning: incompatible pointer types passing 'char *' to parameter of type 'unsigned short *' [-Wincompatible-pointer-types]
ftovaxf(*((float*)&dptr[k]),&bufr2[j]);
^~~~~~~~~
conversion/minctoecat/machine_indep.c:249:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw( (short*)bufr1, (short*)bufr2, 256);
^
conversion/minctoecat/machine_indep.c:297:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) swab(tmp.b,&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:309:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:311:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:324:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:326:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:343:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:345:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw(tmp1.s,(short*)&buf[*i],2);
^
conversion/minctoecat/machine_indep.c:365:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:379:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:381:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
conversion/minctoecat/machine_indep.c:394:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:396:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
conversion/minctoecat/machine_indep.c:409:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration]
if (ntohs(1) != 1) {
^
conversion/minctoecat/machine_indep.c:411:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration]
swaw((short*)tmp.b,(short*)tmp1.b,2);
^
28 warnings generated.
/bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm
libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib
ld: error: duplicate symbol: matrix_errno
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errno)
>>> defined at ecat_write.c
>>> conversion/minctoecat/ecat_write.o:(.bss+0x0)
ld: error: duplicate symbol: matrix_errtxt
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errtxt)
>>> defined at ecat_write.c
>>> conversion/minctoecat/ecat_write.o:(.bss+0x4)
ld: error: duplicate symbol: matrix_errno
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errno)
>>> defined at machine_indep.c
>>> conversion/minctoecat/machine_indep.o:(.bss+0x0)
ld: error: duplicate symbol: matrix_errtxt
>>> defined at minctoecat.c
>>> conversion/minctoecat/minctoecat.o:(matrix_errtxt)
>>> defined at machine_indep.c
>>> conversion/minctoecat/machine_indep.o:(.bss+0x4)
cc: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[3]: *** [Makefile:2378: minctoecat] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
gmake[2]: *** [Makefile:3223: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
gmake[1]: *** [Makefile:1499: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/minc2