[package - 131releng-armv7-default][biology/htslib] Failed for htslib-1.17 in build
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Date: Fri, 07 Apr 2023 20:48:49 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/131releng-armv7-default/6eeeb3bd99c4/logs/htslib-1.17.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131releng-armv7-default&build=6eeeb3bd99c4
Log:
=>> Building biology/htslib
build started at Fri Apr 7 20:47:57 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.17
building for: FreeBSD 131releng-armv7-default-job-01 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm
maintained by: jwb@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1301000
Job Id: 01
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---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.17:
CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
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--End MAKE_ENV--
--PLIST_SUB--
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--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/htslib DOCSDIR=/usr/local/share/doc/htslib EXAMPLESDIR=/usr/local/share/examples/htslib WWWDIR=/usr/local/www/htslib ETCDIR=/usr/local/etc/htslib
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> htslib-1.17 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[131releng-armv7-default-job-01] Installing pkg-1.19.1_1...
[131releng-armv7-default-job-01] Extracting pkg-1.19.1_1: .......... done
===> htslib-1.17 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of htslib-1.17
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.17 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.17 for building
=> SHA256 Checksum OK for htslib-1.17.tar.bz2.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.17 for building
===> Extracting for htslib-1.17
=> SHA256 Checksum OK for htslib-1.17.tar.bz2.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for htslib-1.17
===> Applying FreeBSD patches for htslib-1.17 from /usr/ports/biology/htslib/files
===========================================================================
=======================<phase: build-depends >============================
===> htslib-1.17 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[131releng-armv7-default-job-01] Installing gmake-4.3_2...
[131releng-armv7-default-job-01] `-- Installing gettext-runtime-0.21.1...
[131releng-armv7-default-job-01] | `-- Installing indexinfo-0.3.1...
[131releng-armv7-default-job-01] | `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-default-job-01] `-- Extracting gettext-runtime-0.21.1: .......... done
[131releng-armv7-default-job-01] Extracting gmake-4.3_2: .......... done
===> htslib-1.17 depends on package: gmake>=4.3 - found
===> Returning to build of htslib-1.17
===> htslib-1.17 depends on package: autoconf>=2.71 - not found
===> Installing existing package /packages/All/autoconf-2.71.pkg
<snip>
checking for CCHmac... no
checking for library containing HMAC... -lcrypto
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: linking htscodecs_bundled.mk to htscodecs.mk
===========================================================================
=======================<phase: build >============================
===> Building for htslib-1.17
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/htslib/work/htslib-1.17'
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o kfunc.o kfunc.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o kstring.o kstring.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o bcf_sr_sort.o bcf_sr_sort.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o bgzf.o bgzf.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o errmod.o errmod.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o faidx.o faidx.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o header.o header.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o hfile.o hfile.c
echo '#define HTS_VERSION_TEXT "1.17"' > version.h
printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \
'cc' \
'-isystem /usr/local/include' \
'-Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden' \
'-fstack-protector-strong -fvisibility=hidden ' \
'-ldeflate -llzma -lbz2 -lz -lm -L/usr/local/lib -lcurl -lcrypto' > config_vars.h
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o hts_expr.o hts_expr.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o hts_os.o hts_os.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o md5.o md5.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o multipart.o multipart.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o probaln.o probaln.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o realn.o realn.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o regidx.o regidx.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o region.o region.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o sam.o sam.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o synced_bcf_reader.o synced_bcf_reader.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcf_sweep.o vcf_sweep.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o tbx.o tbx.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o textutils.o textutils.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o thread_pool.o thread_pool.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcf.o vcf.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcfutils.o vcfutils.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_codecs.o cram/cram_codecs.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_decode.o cram/cram_decode.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_encode.o cram/cram_encode.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_external.o cram/cram_external.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_index.o cram/cram_index.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_io.o cram/cram_io.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_stats.o cram/cram_stats.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/mFILE.o cram/mFILE.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/open_trace_file.o cram/open_trace_file.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/string_alloc.o cram/string_alloc.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:31: warning: implicit declaration of function 'vtrn1q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_1 = vtrn1q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:31: warning: implicit declaration of function 'vtrn2q_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:203:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_1 = vtrn2q_u32(C_1, D_1);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:39: warning: implicit declaration of function 'vtrn1q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:39: warning: implicit declaration of function 'vtrn2q_u64' is invalid in C99 [-Wimplicit-function-declaration]
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:209:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv1 =u32_u64(vtrn1q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:210:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv1 =u32_u64(vtrn2q_u64(u64_u32(A2_1),u64_u32(C2_1)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:217:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A1_2 = vtrn1q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:218:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C1_2 = vtrn1q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:219:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t A2_2 = vtrn2q_u32(A_2, B_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:220:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
uint32x4_t C2_2 = vtrn2q_u32(C_2, D_2);
^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:222:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Xmaxv2=u32_u64(vtrn1q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:223:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t Biasv2=u32_u64(vtrn2q_u64(u64_u32(A1_2),u64_u32(C1_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:224:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t RFv2 =u32_u64(vtrn1q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:225:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
uint32x4_t FSv2 =u32_u64(vtrn2q_u64(u64_u32(A2_2),u64_u32(C2_2)));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:232:31: warning: implicit declaration of function 'vaddvq_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint32_t imask1 = vaddvq_u32(vandq_u32(Cv1, bit));
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:21: warning: implicit declaration of function 'vqtbl1_u8' is invalid in C99 [-Wimplicit-function-declaration]
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:238:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
norm2 = vqtbl1_u8(vreinterpretq_u8_u32(Rv2),vtab[imask2]);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:264:31: warning: implicit declaration of function 'vmull_high_u32' is invalid in C99 [-Wimplicit-function-declaration]
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:264:24: error: initializing 'uint64x2_t' (vector of 2 'uint64_t' values) with an expression of incompatible type 'int'
uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
7 warnings and 20 errors generated.
gmake[1]: *** [Makefile:184: htscodecs/htscodecs/rANS_static32x16pr_neon.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/htslib/work/htslib-1.17'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/htslib