[package - main-i386-default][math/R-cran-XLConnect] Failed for R-cran-XLConnect-1.0.5 in stage
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Date: Wed, 28 Sep 2022 01:19:11 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: thierry@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p6cdb1d33b99f_sd3f96f6610/logs/R-cran-XLConnect-1.0.5.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p6cdb1d33b99f_sd3f96f6610
Log:
=>> Building math/R-cran-XLConnect
build started at Wed Sep 28 01:18:53 UTC 2022
port directory: /usr/ports/math/R-cran-XLConnect
package name: R-cran-XLConnect-1.0.5
building for: FreeBSD main-i386-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400071 i386
maintained by: thierry@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1400071
Job Id: 08
!!! Jail is newer than host. (Jail: 1400071, Host: 1400063) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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thierry@FreeBSD.org
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--CONFIGURE_ARGS--
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--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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CRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/XLConnect OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/XLConnect" EXAMPLESDIR="share/examples/XLConnect" DATADIR="share/XLConnect" WWWDIR="www/XLConnect" ETCDIR="etc/XLConnect"
--End PLIST_SUB--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/XLConnect DOCSDIR=/usr/local/share/doc/XLConnect EXAMPLESDIR=/usr/local/share/examples/XLConnect WWWDIR=/usr/local/www/XLConnect ETCDIR=/usr/local/etc/XLConnect
--End SUB_LIST--
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--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[main-i386-default-job-08] Installing pkg-1.18.4...
[main-i386-default-job-08] Extracting pkg-1.18.4: .......... done
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-XLConnect-1.0.5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
=> SHA256 Checksum OK for XLConnect_1.0.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-XLConnect-1.0.5 for building
===> Extracting for R-cran-XLConnect-1.0.5
=> SHA256 Checksum OK for XLConnect_1.0.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-XLConnect-1.0.5
===> Applying FreeBSD patches for R-cran-XLConnect-1.0.5 from /usr/ports/math/R-cran-XLConnect/files
===========================================================================
=======================<phase: build-depends >============================
<snip>
Message from ghostscript9-agpl-base-9.56.1_4:
--
This package installs a script named dvipdf that depends on dvips. If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
=====
Message from alsa-lib-1.2.2_1:
--
===> NOTICE:
The alsa-lib port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from libinotify-20211018:
--
You might want to consider increasing the kern.maxfiles tunable if you plan
to use this library for applications that need to monitor activity of a lot
of files.
=====
Message from openjdk8-8.342.07.1_1:
--
This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.
If you have not done it yet, please do the following:
mount -t fdescfs fdesc /dev/fd
mount -t procfs proc /proc
To make it permanent, you need the following lines in /etc/fstab:
fdesc /dev/fd fdescfs rw 0 0
proc /proc procfs rw 0 0
===> R-cran-XLConnect-1.0.5 depends on package: R-cran-rJava>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/openjdk8/bin/java - found
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/bin/R - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-XLConnect-1.0.5
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-XLConnect-1.0.5 depends on package: R-cran-rJava>0 - found
===> R-cran-XLConnect-1.0.5 depends on package: apache-poi>0 - not found
===> Installing existing package /packages/All/apache-poi-4.1.2.pkg
[main-i386-default-job-08] Installing apache-poi-4.1.2...
[main-i386-default-job-08] Extracting apache-poi-4.1.2: .......... done
=====
Message from apache-poi-4.1.2:
--
===> NOTICE:
The apache-poi port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> R-cran-XLConnect-1.0.5 depends on package: apache-poi>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: SparseBitSet>0 - not found
===> Installing existing package /packages/All/SparseBitSet-1.2.pkg
[main-i386-default-job-08] Installing SparseBitSet-1.2...
[main-i386-default-job-08] Extracting SparseBitSet-1.2: .... done
===> R-cran-XLConnect-1.0.5 depends on package: SparseBitSet>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: apache-xmlbeans>0 - not found
===> Installing existing package /packages/All/apache-xmlbeans-3.1.0.pkg
[main-i386-default-job-08] Installing apache-xmlbeans-3.1.0...
[main-i386-default-job-08] Extracting apache-xmlbeans-3.1.0: .......... done
=====
Message from apache-xmlbeans-3.1.0:
--
To use XMLBeans you might have to define the following variables:
export XMLBEANS_HOME=/usr/local/share/java/classes
export CLASSPATH=/usr/local/share/java/classes/xmlbeans.jar:$CLASSPATH
===> R-cran-XLConnect-1.0.5 depends on package: apache-xmlbeans>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-math>0 - not found
===> Installing existing package /packages/All/apache-commons-math-3.6.1_1.pkg
[main-i386-default-job-08] Installing apache-commons-math-3.6.1_1...
[main-i386-default-job-08] Extracting apache-commons-math-3.6.1_1: ........ done
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-math>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-codec>0 - not found
===> Installing existing package /packages/All/apache-commons-codec-1.15.pkg
[main-i386-default-job-08] Installing apache-commons-codec-1.15...
[main-i386-default-job-08] Extracting apache-commons-codec-1.15: .......... done
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-codec>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-compress>0 - not found
===> Installing existing package /packages/All/apache-commons-compress-1.21.pkg
[main-i386-default-job-08] Installing apache-commons-compress-1.21...
[main-i386-default-job-08] Extracting apache-commons-compress-1.21: .......... done
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-compress>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-collections4>0 - not found
===> Installing existing package /packages/All/apache-commons-collections4-4.4.pkg
[main-i386-default-job-08] Installing apache-commons-collections4-4.4...
[main-i386-default-job-08] Extracting apache-commons-collections4-4.4: .......... done
===> R-cran-XLConnect-1.0.5 depends on package: apache-commons-collections4>0 - found
===> Returning to build of R-cran-XLConnect-1.0.5
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/openjdk8/bin/java - found
===> R-cran-XLConnect-1.0.5 depends on file: /usr/local/bin/R - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-XLConnect-1.0.5
===> Generating temporary packing list
* installing *source* package 'XLConnect' ...
file 'R/onLoad.R' has the wrong MD5 checksum
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
#
# A fatal error has been detected by the Java Runtime Environment:
#
# Internal Error (threadLocalStorage.cpp:58), pid=22641, tid=0x0001d98c
# guarantee(get_thread() == thread) failed: must be the same thread, quickly
#
# JRE version: (8.0_342-b07) (build )
# Java VM: OpenJDK Server VM (25.342-b07 mixed mode bsd-x86 )
# Core dump written. Default location: /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/R.core
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/hs_err_pid22641.log
#
# If you would like to submit a bug report, please visit:
# https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20
#
** testing if installed package can be loaded from final location
#
# A fatal error has been detected by the Java Runtime Environment:
#
# Internal Error (threadLocalStorage.cpp:58), pid=22694, tid=0x0001d98c
# guarantee(get_thread() == thread) failed: must be the same thread, quickly
#
# JRE version: (8.0_342-b07) (build )
# Java VM: OpenJDK Server VM (25.342-b07 mixed mode bsd-x86 )
# Core dump written. Default location: /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/R.core
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/math/R-cran-XLConnect/work/XLConnect/hs_err_pid22694.log
#
# If you would like to submit a bug report, please visit:
# https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20
#
** testing if installed package keeps a record of temporary installation path
Warning in file(con, "rb") :
cannot open file '/tmp/RtmpQpjrCm/file51ec1a300732': No such file or directory
Error in file(con, "rb") : cannot open the connection
* removing '/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect'
*** Error code 1
Stop.
make: stopped in /usr/ports/math/R-cran-XLConnect