[package - 131amd64-default][science/cdo] Failed for cdo-2.0.6 in build
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Date: Sun, 04 Sep 2022 03:37:29 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy16.nyi.freebsd.org/data/131amd64-default/cfc19930a459/logs/cdo-2.0.6.log
Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=131amd64-default&build=cfc19930a459
Log:
=>> Building science/cdo
build started at Sun Sep 4 03:22:11 UTC 2022
port directory: /usr/ports/science/cdo
package name: cdo-2.0.6
building for: FreeBSD 131amd64-default-job-06 13.1-RELEASE-p2 FreeBSD 13.1-RELEASE-p2 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
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Jail OSVERSION: 1301000
Job Id: 06
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===> The following configuration options are available for cdo-2.0.6:
CGRIBEX=on: Use CGRIBEX library for GRIB1 files
ECCODES=on: Use ecCodes for GRIB files
HDF5=on: HDF-5 data format support
JASPER=on: JPEG 2000 support via JasPer
NETCDF=on: NetCDF data format support
PROJ=on: PROJ.4 cartographic projections support
SZIP=on: Szip compression support
UDUNITS=on: Unidata units library (udunits) support
UUID=on: UUID support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--disable-data --disable-extra --disable-fortran --disable-ieg --disable-openmp --disable-service --enable-cdi-lib --program-transform-name="" --with-zlib=/usr --with-cgribex --with-eccodes --with-hdf5 --with-jasper --with-netcdf --with-proj --with-szlib --with-udunits2 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cdo/work/.cache HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cdo/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
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" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--SUB_LIST--
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cdo-2.0.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[131amd64-default-job-06] Installing pkg-1.18.4...
[131amd64-default-job-06] Extracting pkg-1.18.4: .......... done
===> cdo-2.0.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cdo-2.0.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
=> cdo-2.0.6.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://code.mpimet.mpg.de/attachments/download/27276/cdo-2.0.6.tar.gz
cdo-2.0.6.tar.gz 11 MB 8902 kBps 01s
===> Fetching all distfiles required by cdo-2.0.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-2.0.6 for building
=> SHA256 Checksum OK for cdo-2.0.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-2.0.6 for building
===> Extracting for cdo-2.0.6
=> SHA256 Checksum OK for cdo-2.0.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cdo-2.0.6
===> Applying FreeBSD patches for cdo-2.0.6 from /usr/ports/science/cdo/files
===========================================================================
=======================<phase: build-depends >============================
===> cdo-2.0.6 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[131amd64-default-job-06] Installing gmake-4.3_2...
[131amd64-default-job-06] `-- Installing gettext-runtime-0.21...
<snip>
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-parser.lo -MD -MP -MF .deps/libcdo_la-parser.Tpo -c parser.cc -o libcdo_la-parser.o >/dev/null 2>&1
mv -f .deps/libcdo_la-parser.Tpo .deps/libcdo_la-parser.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-node.lo -MD -MP -MF .deps/libcdo_la-node.Tpo -c -o libcdo_la-node.lo `test -f 'node.cc' || echo './'`node.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-node.lo -MD -MP -MF .deps/libcdo_la-node.Tpo -c node.cc -fPIC -DPIC -o .libs/libcdo_la-node.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-node.lo -MD -MP -MF .deps/libcdo_la-node.Tpo -c node.cc -o libcdo_la-node.o >/dev/null 2>&1
mv -f .deps/libcdo_la-node.Tpo .deps/libcdo_la-node.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-process_int.lo -MD -MP -MF .deps/libcdo_la-process_int.Tpo -c -o libcdo_la-process_int.lo `test -f 'process_int.cc' || echo './'`process_int.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-process_int.lo -MD -MP -MF .deps/libcdo_la-process_int.Tpo -c process_int.cc -fPIC -DPIC -o .libs/libcdo_la-process_int.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-process_int.lo -MD -MP -MF .deps/libcdo_la-process_int.Tpo -c process_int.cc -o libcdo_la-process_int.o >/dev/null 2>&1
mv -f .deps/libcdo_la-process_int.Tpo .deps/libcdo_la-process_int.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-progress.lo -MD -MP -MF .deps/libcdo_la-progress.Tpo -c -o libcdo_la-progress.lo `test -f 'progress.cc' || echo './'`progress.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-progress.lo -MD -MP -MF .deps/libcdo_la-progress.Tpo -c progress.cc -fPIC -DPIC -o .libs/libcdo_la-progress.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-progress.lo -MD -MP -MF .deps/libcdo_la-progress.Tpo -c progress.cc -o libcdo_la-progress.o >/dev/null 2>&1
mv -f .deps/libcdo_la-progress.Tpo .deps/libcdo_la-progress.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-pthread_debug.lo -MD -MP -MF .deps/libcdo_la-pthread_debug.Tpo -c -o libcdo_la-pthread_debug.lo `test -f 'pthread_debug.cc' || echo './'`pthread_debug.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-pthread_debug.lo -MD -MP -MF .deps/libcdo_la-pthread_debug.Tpo -c pthread_debug.cc -fPIC -DPIC -o .libs/libcdo_la-pthread_debug.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-pthread_debug.lo -MD -MP -MF .deps/libcdo_la-pthread_debug.Tpo -c pthread_debug.cc -o libcdo_la-pthread_debug.o >/dev/null 2>&1
mv -f .deps/libcdo_la-pthread_debug.Tpo .deps/libcdo_la-pthread_debug.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-readline.lo -MD -MP -MF .deps/libcdo_la-readline.Tpo -c -o libcdo_la-readline.lo `test -f 'readline.cc' || echo './'`readline.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-readline.lo -MD -MP -MF .deps/libcdo_la-readline.Tpo -c readline.cc -fPIC -DPIC -o .libs/libcdo_la-readline.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-readline.lo -MD -MP -MF .deps/libcdo_la-readline.Tpo -c readline.cc -o libcdo_la-readline.o >/dev/null 2>&1
mv -f .deps/libcdo_la-readline.Tpo .deps/libcdo_la-readline.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-realtime.lo -MD -MP -MF .deps/libcdo_la-realtime.Tpo -c -o libcdo_la-realtime.lo `test -f 'realtime.cc' || echo './'`realtime.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-realtime.lo -MD -MP -MF .deps/libcdo_la-realtime.Tpo -c realtime.cc -fPIC -DPIC -o .libs/libcdo_la-realtime.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-realtime.lo -MD -MP -MF .deps/libcdo_la-realtime.Tpo -c realtime.cc -o libcdo_la-realtime.o >/dev/null 2>&1
mv -f .deps/libcdo_la-realtime.Tpo .deps/libcdo_la-realtime.Plo
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_cell_search.lo -MD -MP -MF .deps/libcdo_la-remap_cell_search.Tpo -c remap_cell_search.cc -fPIC -DPIC -o .libs/libcdo_la-remap_cell_search.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_cell_search.lo -MD -MP -MF .deps/libcdo_la-remap_cell_search.Tpo -c remap_cell_search.cc -o libcdo_la-remap_cell_search.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_conserv.lo -MD -MP -MF .deps/libcdo_la-remap_conserv.Tpo -c remap_conserv.cc -fPIC -DPIC -o .libs/libcdo_la-remap_conserv.o
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_conserv_scrip.lo -MD -MP -MF .deps/libcdo_la-remap_conserv_scrip.Tpo -c remap_conserv_scrip.cc -fPIC -DPIC -o .libs/libcdo_la-remap_conserv_scrip.o
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_distwgt.lo -MD -MP -MF .deps/libcdo_la-remap_distwgt.Tpo -c remap_distwgt.cc -fPIC -DPIC -o .libs/libcdo_la-remap_distwgt.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_distwgt.lo -MD -MP -MF .deps/libcdo_la-remap_distwgt.Tpo -c remap_distwgt.cc -o libcdo_la-remap_distwgt.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_grid_cell_search.lo -MD -MP -MF .deps/libcdo_la-remap_grid_cell_search.Tpo -c remap_grid_cell_search.cc -fPIC -DPIC -o .libs/libcdo_la-remap_grid_cell_search.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_grid_cell_search.lo -MD -MP -MF .deps/libcdo_la-remap_grid_cell_search.Tpo -c remap_grid_cell_search.cc -o libcdo_la-remap_grid_cell_search.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_point_search.lo -MD -MP -MF .deps/libcdo_la-remap_point_search.Tpo -c remap_point_search.cc -fPIC -DPIC -o .libs/libcdo_la-remap_point_search.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_point_search.lo -MD -MP -MF .deps/libcdo_la-remap_point_search.Tpo -c remap_point_search.cc -o libcdo_la-remap_point_search.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_scrip_io.lo -MD -MP -MF .deps/libcdo_la-remap_scrip_io.Tpo -c remap_scrip_io.cc -o libcdo_la-remap_scrip_io.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-remap_search_latbins.lo -MD -MP -MF .deps/libcdo_la-remap_search_latbins.Tpo -c remap_search_latbins.cc -o libcdo_la-remap_search_latbins.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-util_string.lo -MD -MP -MF .deps/libcdo_la-util_string.Tpo -c util_string.cc -fPIC -DPIC -o .libs/libcdo_la-util_string.o
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-varray.lo -MD -MP -MF .deps/libcdo_la-varray.Tpo -c varray.cc -fPIC -DPIC -o .libs/libcdo_la-varray.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-varray.lo -MD -MP -MF .deps/libcdo_la-varray.Tpo -c varray.cc -o libcdo_la-varray.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-vertical_interp.lo -MD -MP -MF .deps/libcdo_la-vertical_interp.Tpo -c vertical_interp.cc -fPIC -DPIC -o .libs/libcdo_la-vertical_interp.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-vertical_interp.lo -MD -MP -MF .deps/libcdo_la-vertical_interp.Tpo -c vertical_interp.cc -o libcdo_la-vertical_interp.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-vertint_util.lo -MD -MP -MF .deps/libcdo_la-vertint_util.Tpo -c vertint_util.cc -fPIC -DPIC -o .libs/libcdo_la-vertint_util.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-vertint_util.lo -MD -MP -MF .deps/libcdo_la-vertint_util.Tpo -c vertint_util.cc -o libcdo_la-vertint_util.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT libcdo_la-zaxis_print.lo -MD -MP -MF .deps/libcdo_la-zaxis_print.Tpo -c zaxis_print.cc -o libcdo_la-zaxis_print.o >/dev/null 2>&1
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libtool: compile: cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT json/libcdo_la-jsmn.lo -MD -MP -MF json/.deps/libcdo_la-jsmn.Tpo -c json/jsmn.c -o json/libcdo_la-jsmn.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-kdtree_cartesian.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-kdtree_cartesian.Tpo -c kdtreelib/kdtree_cartesian.cc -o kdtreelib/libcdo_la-kdtree_cartesian.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-kdtree_common.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-kdtree_common.Tpo -c kdtreelib/kdtree_common.cc -fPIC -DPIC -o kdtreelib/.libs/libcdo_la-kdtree_common.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-kdtree_common.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-kdtree_common.Tpo -c kdtreelib/kdtree_common.cc -o kdtreelib/libcdo_la-kdtree_common.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-kdtree_spherical.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-kdtree_spherical.Tpo -c kdtreelib/kdtree_spherical.cc -fPIC -DPIC -o kdtreelib/.libs/libcdo_la-kdtree_spherical.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-kdtree_spherical.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-kdtree_spherical.Tpo -c kdtreelib/kdtree_spherical.cc -o kdtreelib/libcdo_la-kdtree_spherical.o >/dev/null 2>&1
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libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-qsort.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-qsort.Tpo -c kdtreelib/qsort.cc -fPIC -DPIC -o kdtreelib/.libs/libcdo_la-qsort.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-qsort.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-qsort.Tpo -c kdtreelib/qsort.cc -o kdtreelib/libcdo_la-qsort.o >/dev/null 2>&1
mv -f kdtreelib/.deps/libcdo_la-qsort.Tpo kdtreelib/.deps/libcdo_la-qsort.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pmergesort.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pmergesort.Tpo -c -o kdtreelib/libcdo_la-pmergesort.lo `test -f 'kdtreelib/pmergesort.cc' || echo './'`kdtreelib/pmergesort.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pmergesort.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pmergesort.Tpo -c kdtreelib/pmergesort.cc -fPIC -DPIC -o kdtreelib/.libs/libcdo_la-pmergesort.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pmergesort.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pmergesort.Tpo -c kdtreelib/pmergesort.cc -o kdtreelib/libcdo_la-pmergesort.o >/dev/null 2>&1
mv -f kdtreelib/.deps/libcdo_la-pmergesort.Tpo kdtreelib/.deps/libcdo_la-pmergesort.Plo
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pqueue.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pqueue.Tpo -c -o kdtreelib/libcdo_la-pqueue.lo `test -f 'kdtreelib/pqueue.cc' || echo './'`kdtreelib/pqueue.cc
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pqueue.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pqueue.Tpo -c kdtreelib/pqueue.cc -fPIC -DPIC -o kdtreelib/.libs/libcdo_la-pqueue.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -MT kdtreelib/libcdo_la-pqueue.lo -MD -MP -MF kdtreelib/.deps/libcdo_la-pqueue.Tpo -c kdtreelib/pqueue.cc -o kdtreelib/libcdo_la-pqueue.o >/dev/null 2>&1
mv -f kdtreelib/.deps/libcdo_la-pqueue.Tpo kdtreelib/.deps/libcdo_la-pqueue.Plo
/bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -fstack-protector-strong -o libcdo.la libcdo_la-after_dvtrans.lo libcdo_la-after_fctrans.lo libcdo_la-after_namelist.lo libcdo_la-after_sptrans.lo libcdo_la-afterburnerlib.lo libcdo_la-bitinformation.lo libcdo_la-cdi_lockedIO.lo libcdo_la-cdoStream.lo libcdo_la-cdo_apply.lo libcdo_la-cdo_cdi_wrapper.lo libcdo_la-cdo_default_values.lo libcdo_la-cdo_features.lo libcdo_la-cdo_fctrans.lo libcdo_la-cdo_fft.lo libcdo_la-cdo_fill.lo libcdo_la-cdo_getopt.lo libcdo_la-cdo_history.lo libcdo_la-cdo_options.lo libcdo_la-cdo_output.lo libcdo_la-cdo_pthread.lo libcdo_la-cdo_read.lo libcdo_la-cdo_rlimit.lo libcdo_la-cdo_season.lo libcdo_la-cdo_task.lo libcdo_la-cdo_varlist.lo libcdo_la-cdo_vlist.lo libcdo_la-cdo_zaxis.lo libcdo_la-cimdOmp.lo libcdo_la-cmortable_parser.lo libcdo_la-color.lo lib
cdo_la-commandline.lo libcdo_la-constants.lo libcdo_la-convert_units.lo libcdo_la-cthread_debug.lo libcdo_la-custom_modules.lo libcdo_la-dcw_reader.lo libcdo_la-datetime.lo libcdo_la-ecacore.lo libcdo_la-ecautil.lo libcdo_la-eigen_solution.lo libcdo_la-expr.lo libcdo_la-expr_fun.lo libcdo_la-expr_lex.lo libcdo_la-expr_yacc.lo libcdo_la-field.lo libcdo_la-field2.lo libcdo_la-field2_complex.lo libcdo_la-fieldc.lo libcdo_la-fieldc_complex.lo libcdo_la-field_memory.lo libcdo_la-field_meridional.lo libcdo_la-field_zonal.lo libcdo_la-field_vinterp.lo libcdo_la-fileStream.lo libcdo_la-eof_mode.lo libcdo_la-gaussian_latitudes.lo libcdo_la-getMemorySize.lo libcdo_la-getRSS.lo libcdo_la-grid_area.lo libcdo_la-grid_define.lo libcdo_la-grid_from_name.lo libcdo_la-grid_gme.lo libcdo_la-grid_icosphere.lo libcdo_la-grid_point_search.lo libcdo_la-grid_print.lo libcdo_la-grid_read.lo libcdo_la-grid_read_pingo.lo libcdo_la-griddes.lo libcdo_la-griddes_h5.lo libcdo_la-griddes_nc.lo libcdo_la-hetaeta.l
o libcdo_la-institution.lo libcdo_la-interpo!
l.lo libcdo_la-mapping.lo libcdo_la-merge_axis.lo libcdo_la-module_info.lo libcdo_la-module_static_maps.lo libcdo_la-modules.lo mpim_grid/libcdo_la-grid_proj.lo mpim_grid/libcdo_la-grid_rot.lo mpim_grid/libcdo_la-gridreference.lo mpim_grid/libcdo_la-mpim_grid.lo libcdo_la-mpmo.lo libcdo_la-mpmo_color.lo libcdo_la-namelist.lo libcdo_la-par_io.lo libcdo_la-param_conversion.lo libcdo_la-parse_literals.lo libcdo_la-percentiles.lo libcdo_la-percentiles_hist.lo libcdo_la-pipe.lo libcdo_la-pipeStream.lo libcdo_la-pmlist.lo libcdo_la-printinfo.lo libcdo_la-process.lo libcdo_la-processManager.lo libcdo_la-parser.lo libcdo_la-node.lo libcdo_la-process_int.lo libcdo_la-progress.lo libcdo_la-pthread_debug.lo libcdo_la-readline.lo libcdo_la-realtime.lo libcdo_la-region.lo libcdo_la-remap_bicubic.lo libcdo_la-remap_bilinear.lo libcdo_la-remap_cell_search.lo libcdo_la-remap_conserv.lo libcdo_la-remap_conserv_scrip.lo libcdo_la-remap_distwgt.lo libcdo_la-remap_grid_cell_search.lo libcdo_la-remap_po
int_search.lo libcdo_la-remap_scrip_io.lo libcdo_la-remap_search_latbins.lo libcdo_la-remap_search_reg2d.lo libcdo_la-remap_store_link.lo libcdo_la-remap_store_link_cnsrv.lo libcdo_la-remap_vars.lo libcdo_la-remaplib.lo libcdo_la-remapsort.lo libcdo_la-sellist.lo libcdo_la-specspace.lo libcdo_la-statistic.lo libcdo_la-stdnametable.lo libcdo_la-table.lo libcdo_la-timer.lo libcdo_la-util_fileextensions.lo libcdo_la-util_files.lo libcdo_la-util_string.lo libcdo_la-util_wildcards.lo libcdo_la-varray.lo libcdo_la-vertical_interp.lo libcdo_la-vertint_util.lo libcdo_la-zaxis_print.lo json/libcdo_la-jsmn.lo kdtreelib/libcdo_la-kdtree_cartesian.lo kdtreelib/libcdo_la-kdtree_common.lo kdtreelib/libcdo_la-kdtree_spherical.lo kdtreelib/libcdo_la-qsort.lo kdtreelib/libcdo_la-pmergesort.lo kdtreelib/libcdo_la-pqueue.lo -leccodes -lnetcdf -lsz -lpthread -lproj -leccodes -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -L/usr/local/lib
libtool: link: ar cru .libs/libcdo.a .libs/libcdo_la-after_dvtrans.o .libs/libcdo_la-after_fctrans.o .libs/libcdo_la-after_namelist.o .libs/libcdo_la-after_sptrans.o .libs/libcdo_la-afterburnerlib.o .libs/libcdo_la-bitinformation.o .libs/libcdo_la-cdi_lockedIO.o .libs/libcdo_la-cdoStream.o .libs/libcdo_la-cdo_apply.o .libs/libcdo_la-cdo_cdi_wrapper.o .libs/libcdo_la-cdo_default_values.o .libs/libcdo_la-cdo_features.o .libs/libcdo_la-cdo_fctrans.o .libs/libcdo_la-cdo_fft.o .libs/libcdo_la-cdo_fill.o .libs/libcdo_la-cdo_getopt.o .libs/libcdo_la-cdo_history.o .libs/libcdo_la-cdo_options.o .libs/libcdo_la-cdo_output.o .libs/libcdo_la-cdo_pthread.o .libs/libcdo_la-cdo_read.o .libs/libcdo_la-cdo_rlimit.o .libs/libcdo_la-cdo_season.o .libs/libcdo_la-cdo_task.o .libs/libcdo_la-cdo_varlist.o .libs/libcdo_la-cdo_vlist.o .libs/libcdo_la-cdo_zaxis.o .libs/libcdo_la-cimdOmp.o .libs/libcdo_la-cmortable_parser.o .libs/libcdo_la-color.o .libs/libcdo_la-commandline.o .libs/libcdo_la-constants.o .libs
/libcdo_la-convert_units.o .libs/libcdo_la-cthread_debug.o .libs/libcdo_la-custom_modules.o .libs/libcdo_la-dcw_reader.o .libs/libcdo_la-datetime.o .libs/libcdo_la-ecacore.o .libs/libcdo_la-ecautil.o .libs/libcdo_la-eigen_solution.o .libs/libcdo_la-expr.o .libs/libcdo_la-expr_fun.o .libs/libcdo_la-expr_lex.o .libs/libcdo_la-expr_yacc.o .libs/libcdo_la-field.o .libs/libcdo_la-field2.o .libs/libcdo_la-field2_complex.o .libs/libcdo_la-fieldc.o .libs/libcdo_la-fieldc_complex.o .libs/libcdo_la-field_memory.o .libs/libcdo_la-field_meridional.o .libs/libcdo_la-field_zonal.o .libs/libcdo_la-field_vinterp.o .libs/libcdo_la-fileStream.o .libs/libcdo_la-eof_mode.o .libs/libcdo_la-gaussian_latitudes.o .libs/libcdo_la-getMemorySize.o .libs/libcdo_la-getRSS.o .libs/libcdo_la-grid_area.o .libs/libcdo_la-grid_define.o .libs/libcdo_la-grid_from_name.o .libs/libcdo_la-grid_gme.o .libs/libcdo_la-grid_icosphere.o .libs/libcdo_la-grid_point_search.o .libs/libcdo_la-grid_print.o .libs/libcdo_la-grid_read
.o .libs/libcdo_la-grid_read_pingo.o .libs/l!
ibcdo_la-griddes.o .libs/libcdo_la-griddes_h5.o .libs/libcdo_la-griddes_nc.o .libs/libcdo_la-hetaeta.o .libs/libcdo_la-institution.o .libs/libcdo_la-interpol.o .libs/libcdo_la-mapping.o .libs/libcdo_la-merge_axis.o .libs/libcdo_la-module_info.o .libs/libcdo_la-module_static_maps.o .libs/libcdo_la-modules.o mpim_grid/.libs/libcdo_la-grid_proj.o mpim_grid/.libs/libcdo_la-grid_rot.o mpim_grid/.libs/libcdo_la-gridreference.o mpim_grid/.libs/libcdo_la-mpim_grid.o .libs/libcdo_la-mpmo.o .libs/libcdo_la-mpmo_color.o .libs/libcdo_la-namelist.o .libs/libcdo_la-par_io.o .libs/libcdo_la-param_conversion.o .libs/libcdo_la-parse_literals.o .libs/libcdo_la-percentiles.o .libs/libcdo_la-percentiles_hist.o .libs/libcdo_la-pipe.o .libs/libcdo_la-pipeStream.o .libs/libcdo_la-pmlist.o .libs/libcdo_la-printinfo.o .libs/libcdo_la-process.o .libs/libcdo_la-processManager.o .libs/libcdo_la-parser.o .libs/libcdo_la-node.o .libs/libcdo_la-process_int.o .libs/libcdo_la-progress.o .libs/libcdo_la-pthread_debu
g.o .libs/libcdo_la-readline.o .libs/libcdo_la-realtime.o .libs/libcdo_la-region.o .libs/libcdo_la-remap_bicubic.o .libs/libcdo_la-remap_bilinear.o .libs/libcdo_la-remap_cell_search.o .libs/libcdo_la-remap_conserv.o .libs/libcdo_la-remap_conserv_scrip.o .libs/libcdo_la-remap_distwgt.o .libs/libcdo_la-remap_grid_cell_search.o .libs/libcdo_la-remap_point_search.o .libs/libcdo_la-remap_scrip_io.o .libs/libcdo_la-remap_search_latbins.o .libs/libcdo_la-remap_search_reg2d.o .libs/libcdo_la-remap_store_link.o .libs/libcdo_la-remap_store_link_cnsrv.o .libs/libcdo_la-remap_vars.o .libs/libcdo_la-remaplib.o .libs/libcdo_la-remapsort.o .libs/libcdo_la-sellist.o .libs/libcdo_la-specspace.o .libs/libcdo_la-statistic.o .libs/libcdo_la-stdnametable.o .libs/libcdo_la-table.o .libs/libcdo_la-timer.o .libs/libcdo_la-util_fileextensions.o .libs/libcdo_la-util_files.o .libs/libcdo_la-util_string.o .libs/libcdo_la-util_wildcards.o .libs/libcdo_la-varray.o .libs/libcdo_la-vertical_interp.o .libs/libcdo_l
a-vertint_util.o .libs/libcdo_la-zaxis_print!
.o json/.!
libs/libcdo_la-jsmn.o kdtreelib/.libs/libcdo_la-kdtree_cartesian.o kdtreelib/.libs/libcdo_la-kdtree_common.o kdtreelib/.libs/libcdo_la-kdtree_spherical.o kdtreelib/.libs/libcdo_la-qsort.o kdtreelib/.libs/libcdo_la-pmergesort.o kdtreelib/.libs/libcdo_la-pqueue.o
libtool: link: ranlib .libs/libcdo.a
libtool: link: ( cd ".libs" && rm -f "libcdo.la" && ln -s "../libcdo.la" "libcdo.la" )
/bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -fstack-protector-strong -o cdo cdo-cdo.o cdo-Adisit.o cdo-Afterburner.o cdo-Arith.o cdo-Arithc.o cdo-Arithdays.o cdo-Arithlat.o cdo-Bitrounding.o cdo-Cat.o cdo-CDIread.o cdo-CDItest.o cdo-CDIwrite.o cdo-Change.o cdo-Change_e5slm.o cdo-Cloudlayer.o cdo-CMOR.o cdo-CMOR_lite.o cdo-CMOR_table.o cdo-Collgrid.o cdo-Command.o cdo-Comp.o cdo-Compc.o cdo-Complextorect.o cdo-Cond.o cdo-Cond2.o cdo-Condc.o cdo-Consecstat.o cdo-Copy.o cdo-DCW_util.o cdo-Dayarith.o cdo-Deltat.o cdo-Deltime.o cdo-Depth.o cdo-Derivepar.o cdo-Detrend.o cdo-Diff.o cdo-Distgrid.o cdo-Duplicate.o cdo-EOFs.o cdo-Eof3d.o cdo-EcaIndices.o cdo-EcaEtccdi.o cdo-Echam5ini.o cdo-Enlarge.o cdo-Enlargegrid.o cdo-Ensstat.o cdo-Ensstat3.o cdo-Ensval.o cdo-Eofcoeff.o cdo-Eofcoeff3d.o cdo-EstFreq.o cdo-Exprf.o cdo-FC.o cdo-File
des.o cdo-Fillmiss.o cdo-Filter.o cdo-Fldrms.o cdo-Fldstat.o cdo-Fldstat2.o cdo-Fourier.o cdo-Gengrid.o cdo-Gradsdes.o cdo-Gridboxstat.o cdo-Gridcell.o cdo-Gridsearch.o cdo-Harmonic.o cdo-Hi.o cdo-Histogram.o cdo-Importamsr.o cdo-Importbinary.o cdo-Importcmsaf.o cdo-Importobs.o cdo-Importfv3grid.o cdo-Info.o cdo-Input.o cdo-Intgrid.o cdo-Intgridtraj.o cdo-Intlevel.o cdo-Intlevel3d.o cdo-Intntime.o cdo-Inttime.o cdo-Intyear.o cdo-Invert.o cdo-Invertlev.o cdo-Lic.o cdo-MapReduce.o cdo-Maskbox.o cdo-Mastrfu.o cdo-Math.o cdo-Merge.o cdo-Mergegrid.o cdo-Mergetime.o cdo-Merstat.o cdo-Monarith.o cdo-Mrotuv.o cdo-Mrotuvb.o cdo-NCL_wind.o cdo-Ninfo.o cdo-Nmldump.o cdo-Output.o cdo-Outputgmt.o cdo-Pack.o cdo-Pardup.o cdo-Pinfo.o cdo-Pressure.o cdo-Recttocomplex.o cdo-Regres.o cdo-Remap.o cdo-Remapweights.o cdo-Remapeta.o cdo-Remapstat.o cdo-Replace.o cdo-Replacevalues.o cdo-Rhopot.o cdo-Rotuv.o cdo-Runpctl.o cdo-Runstat.o cdo-Samplegrid.o cdo-Samplegridicon.o cdo-Seascount.o cdo-Seaspctl.o cd
o-Seasstat.o cdo-Seasmonstat.o cdo-Selbox.o !
cdo-Selgridcell.o cdo-Select.o cdo-Selmulti.o cdo-Seloperator.o cdo-Selrec.o cdo-Selregion.o cdo-Selsurface.o cdo-Seltime.o cdo-Selvar.o cdo-Selyearidx.o cdo-Set.o cdo-Setattribute.o cdo-Setbox.o cdo-Setgrid.o cdo-Setgridcell.o cdo-Sethalo.o cdo-Setmiss.o cdo-Setpartab.o cdo-Setrcaname.o cdo-Settime.o cdo-Setzaxis.o cdo-Shiftxy.o cdo-Showinfo.o cdo-Showattribute.o cdo-Sinfo.o cdo-Smooth.o cdo-Sort.o cdo-Sorttimestamp.o cdo-Specinfo.o cdo-Spectral.o cdo-Spectrum.o cdo-Split.o cdo-Splitrec.o cdo-Splitsel.o cdo-Splittime.o cdo-Splityear.o cdo-Tee.o cdo-Templates.o cdo-Test.o cdo-Tests.o cdo-Timcount.o cdo-Timcumsum.o cdo-Timfill.o cdo-Timpctl.o cdo-Timselpctl.o cdo-Timselstat.o cdo-Timsort.o cdo-Timstat.o cdo-Timstat2.o cdo-Timstat3.o cdo-Tinfo.o cdo-Tocomplex.o cdo-Transpose.o cdo-Trend.o cdo-Trendarith.o cdo-Tstepcount.o cdo-Unpack.o cdo-Vargen.o cdo-Varrms.o cdo-Varsstat.o cdo-Vertintap.o cdo-Vertintgh.o cdo-Vertintml.o cdo-Vertintzs.o cdo-Vertstat.o cdo-Vertcum.o cdo-Vertwind.o cdo
-Verifygrid.o cdo-Wct.o cdo-Wind.o cdo-WindTrans.o cdo-Writegrid.o cdo-Writerandom.o cdo-XTimstat.o cdo-Yeararith.o cdo-Yearmonstat.o cdo-Ydayarith.o cdo-Ydaypctl.o cdo-Ydaystat.o cdo-Ydrunpctl.o cdo-Ydrunstat.o cdo-Yhourarith.o cdo-Yhourstat.o cdo-Ymonarith.o cdo-Ymonpctl.o cdo-Ymonstat.o cdo-Yseaspctl.o cdo-Yseasstat.o cdo-Zonstat.o cdo-Maggraph.o cdo-Magplot.o cdo-Magvector.o cdo-template_parser.o cdo-results_template_parser.o cdo-magics_template_parser.o cdo-string_utilities.o cdo-cdo_magics_mapper.o libcdo.la ../libcdi/src/libcdi.la ../src/lib/yac/libyac.la ../src/lib/gradsdes/libgradsdes.la -leccodes -lnetcdf -lsz -lpthread -lproj -leccodes -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -L/usr/local/lib
libtool: link: c++ -O2 -pipe -DPTHREAD_MUTEXATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -pthread -fstack-protector-strong -o .libs/cdo cdo-cdo.o cdo-Adisit.o cdo-Afterburner.o cdo-Arith.o cdo-Arithc.o cdo-Arithdays.o cdo-Arithlat.o cdo-Bitrounding.o cdo-Cat.o cdo-CDIread.o cdo-CDItest.o cdo-CDIwrite.o cdo-Change.o cdo-Change_e5slm.o cdo-Cloudlayer.o cdo-CMOR.o cdo-CMOR_lite.o cdo-CMOR_table.o cdo-Collgrid.o cdo-Command.o cdo-Comp.o cdo-Compc.o cdo-Complextorect.o cdo-Cond.o cdo-Cond2.o cdo-Condc.o cdo-Consecstat.o cdo-Copy.o cdo-DCW_util.o cdo-Dayarith.o cdo-Deltat.o cdo-Deltime.o cdo-Depth.o cdo-Derivepar.o cdo-Detrend.o cdo-Diff.o cdo-Distgrid.o cdo-Duplicate.o cdo-EOFs.o cdo-Eof3d.o cdo-EcaIndices.o cdo-EcaEtccdi.o cdo-Echam5ini.o cdo-Enlarge.o cdo-Enlargegrid.o cdo-Ensstat.o cdo-Ensstat3.o cdo-Ensval.o cdo-Eofcoeff.o cdo-Eofcoeff3d.o cdo-EstFreq.o cdo-Exprf.o cdo-FC.o cdo-Filedes.o cdo-Fillmiss.o cdo-Filter
.o cdo-Fldrms.o cdo-Fldstat.o cdo-Fldstat2.o cdo-Fourier.o cdo-Gengrid.o cdo-Gradsdes.o cdo-Gridboxstat.o cdo-Gridcell.o cdo-Gridsearch.o cdo-Harmonic.o cdo-Hi.o cdo-Histogram.o cdo-Importamsr.o cdo-Importbinary.o cdo-Importcmsaf.o cdo-Importobs.o cdo-Importfv3grid.o cdo-Info.o cdo-Input.o cdo-Intgrid.o cdo-Intgridtraj.o cdo-Intlevel.o cdo-Intlevel3d.o cdo-Intntime.o cdo-Inttime.o cdo-Intyear.o cdo-Invert.o cdo-Invertlev.o cdo-Lic.o cdo-MapReduce.o cdo-Maskbox.o cdo-Mastrfu.o cdo-Math.o cdo-Merge.o cdo-Mergegrid.o cdo-Mergetime.o cdo-Merstat.o cdo-Monarith.o cdo-Mrotuv.o cdo-Mrotuvb.o cdo-NCL_wind.o cdo-Ninfo.o cdo-Nmldump.o cdo-Output.o cdo-Outputgmt.o cdo-Pack.o cdo-Pardup.o cdo-Pinfo.o cdo-Pressure.o cdo-Recttocomplex.o cdo-Regres.o cdo-Remap.o cdo-Remapweights.o cdo-Remapeta.o cdo-Remapstat.o cdo-Replace.o cdo-Replacevalues.o cdo-Rhopot.o cdo-Rotuv.o cdo-Runpctl.o cdo-Runstat.o cdo-Samplegrid.o cdo-Samplegridicon.o cdo-Seascount.o cdo-Seaspctl.o cdo-Seasstat.o cdo-Seasmonstat.o
cdo-Selbox.o cdo-Selgridcell.o cdo-Select.o !
cdo-Selmulti.o cdo-Seloperator.o cdo-Selrec.o cdo-Selregion.o cdo-Selsurface.o cdo-Seltime.o cdo-Selvar.o cdo-Selyearidx.o cdo-Set.o cdo-Setattribute.o cdo-Setbox.o cdo-Setgrid.o cdo-Setgridcell.o cdo-Sethalo.o cdo-Setmiss.o cdo-Setpartab.o cdo-Setrcaname.o cdo-Settime.o cdo-Setzaxis.o cdo-Shiftxy.o cdo-Showinfo.o cdo-Showattribute.o cdo-Sinfo.o cdo-Smooth.o cdo-Sort.o cdo-Sorttimestamp.o cdo-Specinfo.o cdo-Spectral.o cdo-Spectrum.o cdo-Split.o cdo-Splitrec.o cdo-Splitsel.o cdo-Splittime.o cdo-Splityear.o cdo-Tee.o cdo-Templates.o cdo-Test.o cdo-Tests.o cdo-Timcount.o cdo-Timcumsum.o cdo-Timfill.o cdo-Timpctl.o cdo-Timselpctl.o cdo-Timselstat.o cdo-Timsort.o cdo-Timstat.o cdo-Timstat2.o cdo-Timstat3.o cdo-Tinfo.o cdo-Tocomplex.o cdo-Transpose.o cdo-Trend.o cdo-Trendarith.o cdo-Tstepcount.o cdo-Unpack.o cdo-Vargen.o cdo-Varrms.o cdo-Varsstat.o cdo-Vertintap.o cdo-Vertintgh.o cdo-Vertintml.o cdo-Vertintzs.o cdo-Vertstat.o cdo-Vertcum.o cdo-Vertwind.o cdo-Verifygrid.o cdo-Wct.o cdo-Win
d.o cdo-WindTrans.o cdo-Writegrid.o cdo-Writerandom.o cdo-XTimstat.o cdo-Yeararith.o cdo-Yearmonstat.o cdo-Ydayarith.o cdo-Ydaypctl.o cdo-Ydaystat.o cdo-Ydrunpctl.o cdo-Ydrunstat.o cdo-Yhourarith.o cdo-Yhourstat.o cdo-Ymonarith.o cdo-Ymonpctl.o cdo-Ymonstat.o cdo-Yseaspctl.o cdo-Yseasstat.o cdo-Zonstat.o cdo-Maggraph.o cdo-Magplot.o cdo-Magvector.o cdo-template_parser.o cdo-results_template_parser.o cdo-magics_template_parser.o cdo-string_utilities.o cdo-cdo_magics_mapper.o ./.libs/libcdo.a -L/usr/local/lib ../libcdi/src/.libs/libcdi.so -lm ../src/lib/yac/.libs/libyac.a ../src/lib/gradsdes/.libs/libgradsdes.a -lproj -ludunits2 -lhdf5_hl -lpthread -leccodes -lhdf5 -lnetcdf -lsz -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
ld: error: undefined hidden symbol: std::__1::enable_if<(is_move_constructible<double>::value) && (is_move_assignable<double>::value), void>::type std::__1::swap<double>(double&, double&)
>>> referenced by cdo_fft.cc
>>> libcdo_la-cdo_fft.o:(cdo::fft(double*, double*, int, int)) in archive ./.libs/libcdo.a
>>> referenced by cdo_fft.cc
>>> libcdo_la-cdo_fft.o:(cdo::fft(double*, double*, int, int)) in archive ./.libs/libcdo.a
c++: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[3]: *** [Makefile:1165: cdo] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.0.6/src'
gmake[2]: *** [Makefile:1002: all] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.0.6/src'
gmake[1]: *** [Makefile:492: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.0.6'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/cdo