[package - main-amd64-default][math/py-fastcluster] Failed for py39-fastcluster-1.2.6 in build
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Date: Sat, 01 Oct 2022 13:09:30 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/pbbd42f3537fd_s536f7d84cd/logs/py39-fastcluster-1.2.6.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=pbbd42f3537fd_s536f7d84cd
Log:
=>> Building math/py-fastcluster
build started at Sat Oct 1 13:09:23 UTC 2022
port directory: /usr/ports/math/py-fastcluster
package name: py39-fastcluster-1.2.6
building for: FreeBSD main-amd64-default-job-10 14.0-CURRENT FreeBSD 14.0-CURRENT 1400071 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1400071
Job Id: 10
!!! Jail is newer than host. (Jail: 1400071, Host: 1400063) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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sunpoet@FreeBSD.org
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# XXX: We really need this but cannot use it while 'make checksum' does not
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CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
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CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_53255a77=yes
CC_OUTPUT_921dbbb2_911cfe02=yes
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.4.pkg
[main-amd64-default-job-10] Installing pkg-1.18.4...
[main-amd64-default-job-10] Extracting pkg-1.18.4: .......... done
===> py39-fastcluster-1.2.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-fastcluster-1.2.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-fastcluster-1.2.6 for building
===> Extracting for py39-fastcluster-1.2.6
=> SHA256 Checksum OK for fastcluster-1.2.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-fastcluster-1.2.6
===========================================================================
=======================<phase: build-depends >============================
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.23.3,1.pkg
[main-amd64-default-job-10] Installing py39-numpy-1.23.3,1...
[main-amd64-default-job-10] `-- Installing gcc11-11.3.0_1...
[main-amd64-default-job-10] | `-- Installing binutils-2.37_4,1...
[main-amd64-default-job-10] | | `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-10] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-10] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-10] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-10] | `-- Extracting binutils-2.37_4,1: .......... done
[main-amd64-default-job-10] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-10] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-10] | `-- Installing mpc-1.2.1...
[main-amd64-default-job-10] | | `-- Installing mpfr-4.1.0_1...
[main-amd64-default-job-10] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-amd64-default-job-10] | `-- Extracting mpc-1.2.1: ......... done
[main-amd64-default-job-10] `-- Extracting gcc11-11.3.0_1: .......... done
[main-amd64-default-job-10] `-- Installing openblas-0.3.20,1...
[main-amd64-default-job-10] `-- Extracting openblas-0.3.20,1: .......... done
[main-amd64-default-job-10] `-- Installing py39-setuptools-63.1.0...
[main-amd64-default-job-10] | `-- Installing python39-3.9.14...
[main-amd64-default-job-10] | | `-- Installing libffi-3.4.2...
[main-amd64-default-job-10] | | `-- Extracting libffi-3.4.2: .......... done
[main-amd64-default-job-10] | | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-10] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-10] | | `-- Installing readline-8.1.2...
[main-amd64-default-job-10] | | `-- Extracting readline-8.1.2: .......... done
[main-amd64-default-job-10] | `-- Extracting python39-3.9.14: .......... done
[main-amd64-default-job-10] `-- Extracting py39-setuptools-63.1.0: .......... done
[main-amd64-default-job-10] `-- Installing suitesparse-umfpack-5.7.9...
[main-amd64-default-job-10] | `-- Installing metis-5.1.0_9...
[main-amd64-default-job-10] | `-- Extracting metis-5.1.0_9: .......... done
[main-amd64-default-job-10] | `-- Installing suitesparse-amd-2.4.6...
[main-amd64-default-job-10] | | `-- Installing suitesparse-config-5.13.0...
[main-amd64-default-job-10] | | `-- Extracting suitesparse-config-5.13.0: ......... done
[main-amd64-default-job-10] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-amd64-default-job-10] | `-- Installing suitesparse-camd-2.4.6...
[main-amd64-default-job-10] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-amd64-default-job-10] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-amd64-default-job-10] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-amd64-default-job-10] | `-- Installing suitesparse-cholmod-3.0.14...
[main-amd64-default-job-10] | | `-- Installing suitesparse-colamd-2.9.6...
[main-amd64-default-job-10] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-amd64-default-job-10] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-amd64-default-job-10] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-amd64-default-job-10] Extracting py39-numpy-1.23.3,1: .......... done
=====
Message from gcc11-11.3.0_1:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc11
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.14:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py39-fastcluster-1.2.6 depends on package: py39-numpy>=0,1 - found
===> Returning to build of py39-fastcluster-1.2.6
===> py39-fastcluster-1.2.6 depends on package: py39-setuptools>=63.1.0 - found
===> py39-fastcluster-1.2.6 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.14 (main, Sep 29 2022, 01:29:15)
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-fastcluster-1.2.6
Fastcluster version: 1.2.6
Python version: 3.9.14 (main, Sep 29 2022, 01:29:15)
[Clang 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc1238
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-cpython-39
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39
creating build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-cpython-39/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/__memory/temporary_buffer.h:27:1: Generating code for declaration 'std::get_temporary_buffer'
4. /usr/include/c++/v1/__memory/temporary_buffer.h:36:5: LLVM IR generation of compound statement ('{}')
#0 0x00000000050cbf71 (/usr/bin/cc+0x50cbf71)
#1 0x00000000050ca2a5 (/usr/bin/cc+0x50ca2a5)
#2 0x00000000050724ce (/usr/bin/cc+0x50724ce)
#3 0x0000000005072693 (/usr/bin/cc+0x5072693)
#4 0x000000082974bbd0 (/lib/libthr.so.3+0x19bd0)
#5 0x000000082974b18f (/lib/libthr.so.3+0x1918f)
#6 0x00007ffffffff8a3 ([vdso]+0x2d3)
#7 0x000000082e1a8c8a __sys_thr_kill (/lib/libc.so.7+0x13dc8a)
#8 0x000000082e121a34 __raise (/lib/libc.so.7+0xb6a34)
#9 0x000000082e1d2af9 abort (/lib/libc.so.7+0x167af9)
#10 0x000000082e104811 (/lib/libc.so.7+0x99811)
#11 0x00000000029a682b (/usr/bin/cc+0x29a682b)
#12 0x0000000002983d93 (/usr/bin/cc+0x2983d93)
#13 0x00000000029aff92 (/usr/bin/cc+0x29aff92)
#14 0x00000000029bf4d9 (/usr/bin/cc+0x29bf4d9)
#15 0x00000000029bec81 (/usr/bin/cc+0x29bec81)
#16 0x00000000029be024 (/usr/bin/cc+0x29be024)
#17 0x00000000029c03db (/usr/bin/cc+0x29c03db)
#18 0x00000000029ca0cc (/usr/bin/cc+0x29ca0cc)
#19 0x00000000029ae34e (/usr/bin/cc+0x29ae34e)
#20 0x00000000029aef12 (/usr/bin/cc+0x29aef12)
#21 0x00000000024f5100 (/usr/bin/cc+0x24f5100)
#22 0x00000000024ee64b (/usr/bin/cc+0x24ee64b)
#23 0x00000000024e2723 (/usr/bin/cc+0x24e2723)
#24 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#25 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#26 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#27 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#28 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#29 0x00000000024e2753 (/usr/bin/cc+0x24e2753)
#30 0x00000000024e0d17 (/usr/bin/cc+0x24e0d17)
#31 0x0000000002fc2164 (/usr/bin/cc+0x2fc2164)
#32 0x0000000002fbf5b6 (/usr/bin/cc+0x2fbf5b6)
#33 0x00000000034f5214 (/usr/bin/cc+0x34f5214)
#34 0x0000000002efc0af (/usr/bin/cc+0x2efc0af)
#35 0x0000000002e906ef (/usr/bin/cc+0x2e906ef)
#36 0x0000000002fb9156 (/usr/bin/cc+0x2fb9156)
#37 0x000000000248a235 (/usr/bin/cc+0x248a235)
#38 0x0000000002497785 (/usr/bin/cc+0x2497785)
#39 0x0000000002d4c857 (/usr/bin/cc+0x2d4c857)
#40 0x0000000005072404 (/usr/bin/cc+0x5072404)
#41 0x0000000002d4c463 (/usr/bin/cc+0x2d4c463)
#42 0x0000000002d1a882 (/usr/bin/cc+0x2d1a882)
#43 0x0000000002d1ad29 (/usr/bin/cc+0x2d1ad29)
#44 0x0000000002d2fa4c (/usr/bin/cc+0x2d2fa4c)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-d342cf.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-d342cf.sh
cc: note: diagnostic msg:
********************
error: command '/usr/bin/cc' failed with exit code 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster