[package - main-armv6-default][misc/xgboost] Failed for xgboost-1.7.1 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Mon, 14 Nov 2022 06:06:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        http://beefy8.nyi.freebsd.org/data/main-armv6-default/p60bece61bcd9_s5c7ba6bdf8/logs/xgboost-1.7.1.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=p60bece61bcd9_s5c7ba6bdf8
Log:

=>> Building misc/xgboost
build started at Mon Nov 14 05:59:14 UTC 2022
port directory: /usr/ports/misc/xgboost
package name: xgboost-1.7.1
building for: FreeBSD main-armv6-default-job-10 14.0-CURRENT FreeBSD 14.0-CURRENT 1400073 arm
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   xgboost-1.7.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.18.4.pkg
[main-armv6-default-job-10] Installing pkg-1.18.4...
[main-armv6-default-job-10] Extracting pkg-1.18.4: .......... done
===>   xgboost-1.7.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
=> SHA256 Checksum OK for dmlc-xgboost-v1.7.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-acb5be3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.7.1 for building
===>  Extracting for xgboost-1.7.1
=> SHA256 Checksum OK for dmlc-xgboost-v1.7.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-acb5be3_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for xgboost-1.7.1
===>  Applying FreeBSD patches for xgboost-1.7.1 from /usr/ports/misc/xgboost/files
===========================================================================
=======================<phase: build-depends  >============================
===>   xgboost-1.7.1 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.24.3_1.pkg
[main-armv6-default-job-10] Installing cmake-core-3.24.3_1...
[main-armv6-default-job-10] `-- Installing expat-2.5.0...
[main-armv6-default-job-10] `-- Extracting expat-2.5.0: .......... done
[main-armv6-default-job-10] `-- Installing jsoncpp-1.9.5...
[main-armv6-default-job-10] `-- Extracting jsoncpp-1.9.5: .......... done
[main-armv6-default-job-10] `-- Installing libuv-1.44.2...
[main-armv6-default-job-10] `-- Extracting libuv-1.44.2: .......... done
[main-armv6-default-job-10] `-- Installing rhash-1.4.3...
[main-armv6-default-job-10] |   `-- Installing gettext-runtime-0.21...
[main-armv6-default-job-10] |   | `-- Installing indexinfo-0.3.1...
[main-armv6-default-job-10] |   | `-- Extracting indexinfo-0.3.1: .... done
[main-armv6-default-job-10] |   `-- Extracting gettext-runtime-0.21: .......... done
[main-armv6-default-job-10] `-- Extracting rhash-1.4.3: .......... done
[main-armv6-default-job-10] Extracting cmake-core-3.24.3_1: .......... done
===>   xgboost-1.7.1 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of xgboost-1.7.1
===>   xgboost-1.7.1 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.11.1,2.pkg
[main-armv6-default-job-10] Installing ninja-1.11.1,2...
[main-armv6-default-job-10] `-- Installing python39-3.9.15...
[main-armv6-default-job-10] |   `-- Installing libffi-3.4.3...
[main-armv6-default-job-10] |   `-- Extracting libffi-3.4.3: .......... done
[main-armv6-default-job-10] |   `-- Installing mpdecimal-2.5.1...
[main-armv6-default-job-10] |   `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv6-default-job-10] |   `-- Installing readline-8.1.2...
[main-armv6-default-job-10] |   `-- Extracting readline-8.1.2: .......... done
[main-armv6-default-job-10] `-- Extracting python39-3.9.15: .......... done
[main-armv6-default-job-10] Extracting ninja-1.11.1,2: ........ done
=====
Message from python39-3.9.15:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   xgboost-1.7.1 depends on executable: ninja - found
===>   Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: lib-depends    >============================
===>   xgboost-1.7.1 depends on shared library: libdmlc.so - not found
===>   Installing existing package /packages/All/dmlc-core-0.3.123.pkg
[main-armv6-default-job-10] Installing dmlc-core-0.3.123...
[main-armv6-default-job-10] Extracting dmlc-core-0.3.123: .......... done
===>   xgboost-1.7.1 depends on shared library: libdmlc.so - found (/usr/local/lib/libdmlc.so)
===>   Returning to build of xgboost-1.7.1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for xgboost-1.7.1
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/misc/xgboost/work/.build
-- The CXX compiler identification is Clang 14.0.5
-- The C compiler identification is Clang 14.0.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMake version 3.24.3
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT - Failed
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT - Success
-- xgboost VERSION: 1.7.1
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /wrkdirs/usr/ports/misc/xgboost/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for xgboost-1.7.1
[  1% 1/71] /nxb-bin/usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -fPIE -funroll-loops -pthread -std=gnu++14 -MD -MT CMakeFiles/runxgboost.dir/src/cli_main.cc.o -MF CMakeFiles/runxgboost.dir/src/cli_main.cc.o.d -o CMakeFiles/runxgboost.dir/src/cli_main.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/cli_main.cc
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In file included from /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/common/json.cc:18:
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include/xgboost/json_io.h:103:13: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
    if (got == EOF) {
        ~~~ ^  ~~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/common/json.cc:337:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
    if (c == -1) { break; }
        ~ ^  ~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/common/json.cc:462:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
    if (ch == EOF || ch == '\r' || ch == '\n') {
        ~~ ^  ~~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/common/json.cc:800:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
    if (c == -1) {
        ~ ^  ~~
4 warnings generated.
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FAILED: src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o 
/nxb-bin/usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -MF src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o.d -o src/CMakeFiles/objxgboost.dir/predictor/cpu_predictor.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc:167:24: error: non-constant-expression cannot be narrowed from type 'unsigned long long' to 'size_t' (aka 'unsigned int') in initializer list [-Wc++11-narrowing]
    size_t non_missing{beg};
                       ^~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.7.1/src/predictor/cpu_predictor.cc:167:24: note: insert an explicit cast to silence this issue
    size_t non_missing{beg};
                       ^~~
                       static_cast<size_t>( )
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/misc/xgboost