[package - main-i386-default][math/moab] Failed for moab-5.3.1_1 in build
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Date: Sat, 21 May 2022 07:11:02 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/pa3e075eb6037_s5af718a592/logs/moab-5.3.1_1.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=pa3e075eb6037_s5af718a592
Log:
=>> Building math/moab
build started at Sat May 21 07:07:34 UTC 2022
port directory: /usr/ports/math/moab
package name: moab-5.3.1_1
building for: FreeBSD main-i386-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400059 i386
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License LGPL3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> moab-5.3.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-i386-default-job-13] Installing pkg-1.17.5_1...
[main-i386-default-job-13] Extracting pkg-1.17.5_1: .......... done
===> moab-5.3.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of moab-5.3.1_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL3+ accepted by the user
=> moab-5.3.1.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://bitbucket.org/fathomteam/moab/get/65880ffe833d.tar.gz?dummy=/moab-5.3.1.tar.gz
moab-5.3.1.tar.gz 16 MB 66 MBps 01s
===> Fetching all distfiles required by moab-5.3.1_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL3+ accepted by the user
===> Fetching all distfiles required by moab-5.3.1_1 for building
=> SHA256 Checksum OK for moab-5.3.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL3+ accepted by the user
===> Fetching all distfiles required by moab-5.3.1_1 for building
===> Extracting for moab-5.3.1_1
=> SHA256 Checksum OK for moab-5.3.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for moab-5.3.1_1
===> Applying FreeBSD patches for moab-5.3.1_1 from /usr/ports/math/moab/files
<snip>
--- src/CMakeFiles/MOAB.dir/StructuredElementSeq.cpp.o ---
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/StructuredElementSeq.cpp:16:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/StructuredElementSeq.hpp:31:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/ScdElementData.hpp:31:
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:186:15: warning: definition of implicit copy constructor for 'HomXform' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy]
HomXform& operator=( const HomXform& rhs );
^
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:452:20: note: in implicit copy constructor for 'moab::HomXform' first required here
HomXform inv = rhs2.inverse();
^
1 warning generated.
--- src/CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o ---
[ 35%] Building CXX object src/CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o
cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
LDING_MB -I/usr/local/include/eigen3 -DUSE_MPI -std=gnu++11 -MD -MT src/CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o -MF CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o.d -o CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptElementSeq.cpp
--- src/CMakeFiles/MOAB.dir/SweptElementData.cpp.o ---
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptElementData.cpp:16:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptElementData.hpp:31:
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:186:15: warning: definition of implicit copy constructor for 'HomXform' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy]
HomXform& operator=( const HomXform& rhs );
^
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:452:20: note: in implicit copy constructor for 'moab::HomXform' first required here
HomXform inv = rhs2.inverse();
^
1 warning generated.
--- src/CMakeFiles/MOAB.dir/SweptVertexData.cpp.o ---
[ 35%] Building CXX object src/CMakeFiles/MOAB.dir/SweptVertexData.cpp.o
cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
LDING_MB -I/usr/local/include/eigen3 -DUSE_MPI -std=gnu++11 -MD -MT src/CMakeFiles/MOAB.dir/SweptVertexData.cpp.o -MF CMakeFiles/MOAB.dir/SweptVertexData.cpp.o.d -o CMakeFiles/MOAB.dir/SweptVertexData.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptVertexData.cpp
--- src/CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o ---
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptElementSeq.cpp:16:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptElementSeq.hpp:26:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/ScdElementData.hpp:31:
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:186:15: warning: definition of implicit copy constructor for 'HomXform' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy]
HomXform& operator=( const HomXform& rhs );
^
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:452:20: note: in implicit copy constructor for 'moab::HomXform' first required here
HomXform inv = rhs2.inverse();
^
1 warning generated.
--- src/CMakeFiles/MOAB.dir/SysUtil.cpp.o ---
[ 35%] Building CXX object src/CMakeFiles/MOAB.dir/SysUtil.cpp.o
cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
LDING_MB -I/usr/local/include/eigen3 -DUSE_MPI -std=gnu++11 -MD -MT src/CMakeFiles/MOAB.dir/SysUtil.cpp.o -MF CMakeFiles/MOAB.dir/SysUtil.cpp.o.d -o CMakeFiles/MOAB.dir/SysUtil.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SysUtil.cpp
--- src/CMakeFiles/MOAB.dir/SweptVertexData.cpp.o ---
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptVertexData.cpp:16:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/SweptVertexData.hpp:28:
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:186:15: warning: definition of implicit copy constructor for 'HomXform' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy]
HomXform& operator=( const HomXform& rhs );
^
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:452:20: note: in implicit copy constructor for 'moab::HomXform' first required here
HomXform inv = rhs2.inverse();
^
1 warning generated.
--- src/CMakeFiles/MOAB.dir/TagInfo.cpp.o ---
[ 36%] Building CXX object src/CMakeFiles/MOAB.dir/TagInfo.cpp.o
cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
LDING_MB -I/usr/local/include/eigen3 -DUSE_MPI -std=gnu++11 -MD -MT src/CMakeFiles/MOAB.dir/TagInfo.cpp.o -MF CMakeFiles/MOAB.dir/TagInfo.cpp.o.d -o CMakeFiles/MOAB.dir/TagInfo.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/TagInfo.cpp
--- src/CMakeFiles/MOAB.dir/TupleList.cpp.o ---
[ 36%] Building CXX object src/CMakeFiles/MOAB.dir/TupleList.cpp.o
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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--- src/CMakeFiles/MOAB.dir/verdict/V_WedgeMetric.cpp.o ---
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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--- src/CMakeFiles/MOAB.dir/verdict/VerdictVector.cpp.o ---
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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--- src/CMakeFiles/MOAB.dir/verdict/VerdictWrapper.cpp.o ---
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/bin/c++ -DMOAB_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/io/mhdf -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DIS_BUI
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--- lib/libMOAB.so.5.3.1 ---
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MOAB.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -L/usr/local/mpi/openmpi/lib -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong -shared -Wl,-soname,libMOAB.so.5 -o ../lib/libMOAB.so.5.3.1 CMakeFiles/MOAB.dir/AdaptiveKDTree.cpp.o CMakeFiles/MOAB.dir/AEntityFactory.cpp.o CMakeFiles/MOAB.dir/AffineXform.cpp.o CMakeFiles/MOAB.dir/AxisBox.cpp.o CMakeFiles/MOAB.dir/BitPage.cpp.o CMakeFiles/MOAB.dir/BitTag.cpp.o CMakeFiles/MOAB.dir/BoundBox.cpp.o CMakeFiles/MOAB.dir/BSPTree.cpp.o CMakeFiles/MOAB.dir/BSPTreePoly.cpp.o CMakeFiles/MOAB.di
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tedBoxTreeTool.cpp.o CMakeFiles/MOAB.dir/lot!
te/poly.c.o CMakeFiles/MOAB.dir/lotte/findpt.c.o CMakeFiles/MOAB.dir/lotte/errmem.c.o CMakeFiles/MOAB.dir/lotte/tensor.c.o CMakeFiles/MOAB.dir/LocalDiscretization/ElemEvaluator.cpp.o CMakeFiles/MOAB.dir/LocalDiscretization/LinearHex.cpp.o CMakeFiles/MOAB.dir/LocalDiscretization/LinearQuad.cpp.o CMakeFiles/MOAB.dir/LocalDiscretization/LinearTet.cpp.o CMakeFiles/MOAB.dir/LocalDiscretization/LinearTri.cpp.o CMakeFiles/MOAB.dir/LocalDiscretization/QuadraticHex.cpp.o CMakeFiles/MOAB.dir/MeshGeneration.cpp.o CMakeFiles/MOAB.dir/NestedRefine.cpp.o CMakeFiles/MOAB.dir/PolyElementSeq.cpp.o CMakeFiles/MOAB.dir/ProgOptions.cpp.o CMakeFiles/MOAB.dir/Range.cpp.o CMakeFiles/MOAB.dir/RangeSeqIntersectIter.cpp.o CMakeFiles/MOAB.dir/ReadUtil.cpp.o CMakeFiles/MOAB.dir/ReaderWriterSet.cpp.o CMakeFiles/MOAB.dir/ReorderTool.cpp.o CMakeFiles/MOAB.dir/ScdElementData.cpp.o CMakeFiles/MOAB.dir/ScdInterface.cpp.o CMakeFiles/MOAB.dir/ScdVertexData.cpp.o CMakeFiles/MOAB.dir/SequenceData.cpp.o CMakeFiles/MOAB.d
ir/SequenceManager.cpp.o CMakeFiles/MOAB.dir/SetIterator.cpp.o CMakeFiles/MOAB.dir/Skinner.cpp.o CMakeFiles/MOAB.dir/SmoothCurve.cpp.o CMakeFiles/MOAB.dir/SmoothFace.cpp.o CMakeFiles/MOAB.dir/SparseTag.cpp.o CMakeFiles/MOAB.dir/SpatialLocator.cpp.o CMakeFiles/MOAB.dir/SpectralMeshTool.cpp.o CMakeFiles/MOAB.dir/StructuredElementSeq.cpp.o CMakeFiles/MOAB.dir/SweptElementData.cpp.o CMakeFiles/MOAB.dir/SweptElementSeq.cpp.o CMakeFiles/MOAB.dir/SweptVertexData.cpp.o CMakeFiles/MOAB.dir/SysUtil.cpp.o CMakeFiles/MOAB.dir/TagInfo.cpp.o CMakeFiles/MOAB.dir/TupleList.cpp.o CMakeFiles/MOAB.dir/Tree.cpp.o CMakeFiles/MOAB.dir/Types.cpp.o CMakeFiles/MOAB.dir/TypeSequenceManager.cpp.o CMakeFiles/MOAB.dir/UnstructuredElemSeq.cpp.o CMakeFiles/MOAB.dir/Util.cpp.o CMakeFiles/MOAB.dir/VarLenDenseTag.cpp.o CMakeFiles/MOAB.dir/VarLenSparseTag.cpp.o CMakeFiles/MOAB.dir/VertexSequence.cpp.o CMakeFiles/MOAB.dir/WriteUtil.cpp.o CMakeFiles/MOAB.dir/verdict/V_EdgeMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_Gaus
sIntegration.cpp.o CMakeFiles/MOAB.dir/verdi!
ct/V_HexM!
etric.cpp.o CMakeFiles/MOAB.dir/verdict/V_KnifeMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_PyramidMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_QuadMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_TetMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_TriMetric.cpp.o CMakeFiles/MOAB.dir/verdict/V_WedgeMetric.cpp.o CMakeFiles/MOAB.dir/verdict/VerdictVector.cpp.o CMakeFiles/MOAB.dir/verdict/VerdictWrapper.cpp.o io/CMakeFiles/moabio.dir/IODebugTrack.cpp.o io/CMakeFiles/moabio.dir/ExoIIUtil.cpp.o io/CMakeFiles/moabio.dir/FileTokenizer.cpp.o io/CMakeFiles/moabio.dir/GmshUtil.cpp.o io/CMakeFiles/moabio.dir/ReadABAQUS.cpp.o io/CMakeFiles/moabio.dir/ReadGmsh.cpp.o io/CMakeFiles/moabio.dir/ReadIDEAS.cpp.o io/CMakeFiles/moabio.dir/ReadMCNP5.cpp.o io/CMakeFiles/moabio.dir/ReadNASTRAN.cpp.o io/CMakeFiles/moabio.dir/ReadRTT.cpp.o io/CMakeFiles/moabio.dir/ReadOBJ.cpp.o io/CMakeFiles/moabio.dir/ReadSmf.cpp.o io/CMakeFiles/moabio.dir/ReadSms.cpp.o io/CMakeFiles/moabio.dir/ReadSTL.cpp.o io/CMakeFiles/moabio.dir/ReadTe
mplate.cpp.o io/CMakeFiles/moabio.dir/ReadTetGen.cpp.o io/CMakeFiles/moabio.dir/ReadVtk.cpp.o io/CMakeFiles/moabio.dir/SMF_State.cpp.o io/CMakeFiles/moabio.dir/Tqdcfr.cpp.o io/CMakeFiles/moabio.dir/VtkUtil.cpp.o io/CMakeFiles/moabio.dir/WriteAns.cpp.o io/CMakeFiles/moabio.dir/WriteGMV.cpp.o io/CMakeFiles/moabio.dir/WriteGmsh.cpp.o io/CMakeFiles/moabio.dir/WriteSTL.cpp.o io/CMakeFiles/moabio.dir/WriteSmf.cpp.o io/CMakeFiles/moabio.dir/WriteTemplate.cpp.o io/CMakeFiles/moabio.dir/WriteVtk.cpp.o IntxMesh/CMakeFiles/moab_intx_mesh.dir/Intx2Mesh.cpp.o IntxMesh/CMakeFiles/moab_intx_mesh.dir/Intx2MeshInPlane.cpp.o IntxMesh/CMakeFiles/moab_intx_mesh.dir/Intx2MeshOnSphere.cpp.o IntxMesh/CMakeFiles/moab_intx_mesh.dir/IntxRllCssphere.cpp.o IntxMesh/CMakeFiles/moab_intx_mesh.dir/IntxUtils.cpp.o parallel/CMakeFiles/moabpar.dir/ParallelComm.cpp.o parallel/CMakeFiles/moabpar.dir/ProcConfig.cpp.o parallel/CMakeFiles/moabpar.dir/ParallelData.cpp.o parallel/CMakeFiles/moabpar.dir/ParallelMergeMesh.cp
p.o parallel/CMakeFiles/moabpar.dir/ReadPara!
llel.cpp.!
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cd /wrkdirs/usr/ports/math/moab/work/.build/src && /usr/local/bin/cmake -E cmake_symlink_library ../lib/libMOAB.so.5.3.1 ../lib/libMOAB.so.5 ../lib/libMOAB.so
[ 43%] Built target MOAB
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/usr/bin/make -f tools/CMakeFiles/mbsize.dir/build.make tools/CMakeFiles/mbsize.dir/depend
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
--- itaps/imesh/CMakeFiles/iMesh.dir/depend ---
--- tools/CMakeFiles/mbsize.dir/all ---
--- tools/CMakeFiles/mbsize.dir/depend ---
cd /wrkdirs/usr/ports/math/moab/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/tools /wrkdirs/usr/ports/math/moab/work/.build /wrkdirs/usr/ports/math/moab/work/.build/tools /wrkdirs/usr/ports/math/moab/work/.build/tools/CMakeFiles/mbsize.dir/DependInfo.cmake
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
cd /wrkdirs/usr/ports/math/moab/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/itaps/imesh /wrkdirs/usr/ports/math/moab/work/.build /wrkdirs/usr/ports/math/moab/work/.build/itaps/imesh /wrkdirs/usr/ports/math/moab/work/.build/itaps/imesh/CMakeFiles/iMesh.dir/DependInfo.cmake
/usr/bin/make -f itaps/imesh/CMakeFiles/iMesh.dir/build.make itaps/imesh/CMakeFiles/iMesh.dir/build
--- tools/CMakeFiles/mbsize.dir/all ---
/usr/bin/make -f tools/CMakeFiles/mbsize.dir/build.make tools/CMakeFiles/mbsize.dir/build
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
--- itaps/imesh/CMakeFiles/iMesh.dir/iMesh_MOAB.cpp.o ---
--- tools/CMakeFiles/mbsize.dir/all ---
--- tools/CMakeFiles/mbsize.dir/size.cpp.o ---
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
[ 44%] Building CXX object itaps/imesh/CMakeFiles/iMesh.dir/iMesh_MOAB.cpp.o
--- tools/CMakeFiles/mbsize.dir/all ---
[ 45%] Building CXX object tools/CMakeFiles/mbsize.dir/size.cpp.o
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
cd /wrkdirs/usr/ports/math/moab/work/.build/itaps/imesh && /usr/bin/c++ -DiMesh_EXPORTS -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/itaps -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/itaps/imesh -I/wrkdirs/usr/ports/math/moab/work/.build/itaps/imesh -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/.build/itaps -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -fu
nroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=gnu++11 -I/usr/local/include/eigen3 -DUSE_MPI -MD -MT itaps/imesh/CMakeFiles/iMesh.dir/iMesh_MOAB.cpp.o -MF CMakeFiles/iMesh.dir/iMesh_MOAB.cpp.o.d -o CMakeFiles/iMesh.dir/iMesh_MOAB.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/itaps/imesh/iMesh_MOAB.cpp
--- tools/CMakeFiles/mbsize.dir/all ---
cd /wrkdirs/usr/ports/math/moab/work/.build/tools && /usr/bin/c++ -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/.build -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/tools -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++11 -I/usr/local/include/eigen3 -DUSE_MPI -MD -MT to
ols/CMakeFiles/mbsize.dir/size.cpp.o -MF CMakeFiles/mbsize.dir/size.cpp.o.d -o CMakeFiles/mbsize.dir/size.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/tools/size.cpp
--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/itaps/imesh/iMesh_MOAB.cpp:7:
In file included from /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/ScdInterface.hpp:7:
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:186:15: warning: definition of implicit copy constructor for 'HomXform' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy]
HomXform& operator=( const HomXform& rhs );
^
/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/moab/HomXform.hpp:452:20: note: in implicit copy constructor for 'moab::HomXform' first required here
HomXform inv = rhs2.inverse();
^
--- tools/CMakeFiles/mbsize.dir/all ---
--- tools/CMakeFiles/mbsize.dir/measure.cpp.o ---
[ 45%] Building CXX object tools/CMakeFiles/mbsize.dir/measure.cpp.o
cd /wrkdirs/usr/ports/math/moab/work/.build/tools && /usr/bin/c++ -I/usr/local/include/eigen3 -I/usr/local/mpi/openmpi/include -I/wrkdirs/usr/ports/math/moab/work/.build -I/wrkdirs/usr/ports/math/moab/work/.build/src -I/wrkdirs/usr/ports/math/moab/work/.build/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/src/parallel -I/wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/tools -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++11 -I/usr/local/include/eigen3 -DUSE_MPI -MD -MT to
ols/CMakeFiles/mbsize.dir/measure.cpp.o -MF CMakeFiles/mbsize.dir/measure.cpp.o.d -o CMakeFiles/mbsize.dir/measure.cpp.o -c /wrkdirs/usr/ports/math/moab/work/fathomteam-moab-65880ffe833d/tools/measure.cpp
--- bin/mbsize ---
[ 45%] Linking CXX executable ../bin/mbsize
cd /wrkdirs/usr/ports/math/moab/work/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mbsize.dir/link.txt --verbose=1
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pedantic -fpic -Wall -Wno-long-long -Wextra -Wno-cast-align -Wsign-compare -Wpointer-arith -Wformat -Wformat-security -Wunused-parameter -fstack-protector-all -mtune=native -fpermissive -Wno-ignored-attributes -Wno-variadic-macros -Wno-deprecated-declarations -Wno-unused-local-typedefs -funroll-loops -fstrict-aliasing -Wno-unused -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath -Wl,/usr/local/mpi/openmpi/lib -Wl,--enable-new-dtags -pthread -L/usr/local/mpi/openmpi/lib -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong CMakeFiles/mbsize.dir/size.cpp.o CMakeFiles/mbsize.dir/measure.cpp.o -o ../bin/mbsize -Wl,-rpath,/wrkdirs/usr/ports/math/moab/work/.build/lib:/usr/local/lib: ../lib/libMOAB.so.5.3.1 /usr/local/lib/libopenblas.so /usr/local/lib/libopenblas.so /usr/local/mpi/openmpi/lib/libmpi_cxx.so /usr/local/
lib/libopenblas.so
/usr/local/bin/ld: CMakeFiles/mbsize.dir/size.cpp.o: undefined reference to symbol 'MPI_Comm_rank'
/usr/local/bin/ld: /usr/local/mpi/openmpi/lib/libmpi.so.40: error adding symbols: DSO missing from command line
c++: error: linker command failed with exit code 1 (use -v to see invocation)
*** [bin/mbsize] Error code 1
make[3]: stopped in /wrkdirs/usr/ports/math/moab/work/.build
1 error
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--- itaps/imesh/CMakeFiles/iMesh.dir/all ---
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make[2]: stopped in /wrkdirs/usr/ports/math/moab/work/.build
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make[2]: stopped in /wrkdirs/usr/ports/math/moab/work/.build
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make[1]: stopped in /wrkdirs/usr/ports/math/moab/work/.build
1 error
make[1]: stopped in /wrkdirs/usr/ports/math/moab/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/moab