[package - 130amd64-quarterly][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-26.0.1 in build
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Date: Sun, 01 May 2022 03:01:09 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy14.nyi.freebsd.org/data/130amd64-quarterly/29ab617cda7c/logs/ncbi-cxx-toolkit-26.0.1.log
Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=130amd64-quarterly&build=29ab617cda7c
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Sun May 1 01:31:59 UTC 2022
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-26.0.1
building for: FreeBSD 130amd64-quarterly-job-11 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 amd64
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-cxx-toolkit-26.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[130amd64-quarterly-job-11] Installing pkg-1.17.5_1...
[130amd64-quarterly-job-11] Extracting pkg-1.17.5_1: .......... done
===> ncbi-cxx-toolkit-26.0.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-26.0.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-26.0.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-26.0.1 for building
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-26.0.1 for building
===> Extracting for ncbi-cxx-toolkit-26.0.1
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-cxx-toolkit-26.0.1
===> Applying FreeBSD patches for ncbi-cxx-toolkit-26.0.1 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-cxx-toolkit-26.0.1 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[130amd64-quarterly-job-11] Installing gmake-4.3_2...
[130amd64-quarterly-job-11] `-- Installing gettext-runtime-0.21...
[130amd64-quarterly-job-11] | `-- Installing indexinfo-0.3.1...
[130amd64-quarterly-job-11] | `-- Extracting indexinfo-0.3.1: .... done
[130amd64-quarterly-job-11] `-- Extracting gettext-runtime-0.21: .......... done
[130amd64-quarterly-job-11] Extracting gmake-4.3_2: .......... done
===> ncbi-cxx-toolkit-26.0.1 depends on package: gmake>=4.3 - found
===> Returning to build of ncbi-cxx-toolkit-26.0.1
===> ncbi-cxx-toolkit-26.0.1 depends on file: /usr/local/bin/python3.8 - not found
===> Installing existing package /packages/All/python38-3.8.13.pkg
[130amd64-quarterly-job-11] Installing python38-3.8.13...
[130amd64-quarterly-job-11] `-- Installing libffi-3.3_1...
[130amd64-quarterly-job-11] `-- Extracting libffi-3.3_1: .......... done
[130amd64-quarterly-job-11] `-- Installing mpdecimal-2.5.1...
[130amd64-quarterly-job-11] `-- Extracting mpdecimal-2.5.1: .......... done
<snip>
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track TMPL=dbsnp -w export-headers
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track'
gmake[6]: Nothing to be done for 'export-headers'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track TMPL=dbsnp -w all
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/snpptis.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o
/bin/rm -f libdbsnp_ptis.so .libdbsnp_ptis.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -shared -o libdbsnp_ptis.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/lib
/bin/ln -f libdbsnp_ptis.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/lib/libdbsnp_ptis.so
/bin/ln -f .dbsnp_ptis.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/status/.dbsnp_ptis.dep
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track'
/usr/local/bin/gmake -C test -w all_r || exit 5
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track/test'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/test TMPL=snp_ptis_test -w all
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/test/snp_ptis_test.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_APP_BUILT_AS=snp_ptis_test -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objects/dbsnp/primary_track/test/snp_ptis_test.cpp -o snp_ptis_test.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O snp_ptis_test.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/lib -ldbsnp_ptis -lgrpc_integration -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxconnect -lxutil -lxncbi -lz -lbz2 -lz -lm -pthread -o snp_ptis_test
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/scripts/common/impl/if_diff.sh /bin/ln -f snp_ptis_test /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/bin
/bin/ln -f snp_ptis_test /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/bin/snp_ptis_test
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track/test'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track/test'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objects/dbsnp/primary_track'
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/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/table_field.cpp -o table_field.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/annot_collector.cpp -o annot_collector.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/mapped_feat.cpp -o mapped_feat.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/tse_assigner.cpp -o tse_assigner.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/scope_transaction.cpp -o scope_transaction.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/include -DNCBI_BUILD_SESSION_ID=97bf4120-c8ee-11ec-9a60-0cc47ad9377e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objmgr'
FAILED: src/objmgr/Makefile.objmgr.lib
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objmgr'
/bin/rm -f libxobjmgr.so libxobjmgr.so .xobjmgr.dep .libxobjmgr.so.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/lib/libxobjmgr.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/status/.xobjmgr.dep
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objmgr'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build/objmgr'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1/Clang1101-ReleaseMTDLL64/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-26.0.1'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit