[package - main-amd64-default][biology/molden] Failed for molden-6.7,1 in build
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Date: Sun, 27 Mar 2022 11:26:21 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jmd@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p60ab72786154_s0868f62176/logs/molden-6.7,1.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p60ab72786154_s0868f62176
Log:
=>> Building biology/molden
build started at Sun Mar 27 11:25:03 UTC 2022
port directory: /usr/ports/biology/molden
package name: molden-6.7,1
building for: FreeBSD main-amd64-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400053 amd64
maintained by: jmd@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1400053
Job Id: 06
!!! Jail is newer than host. (Jail: 1400053, Host: 1400050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
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UNAME_v=FreeBSD 14.0-CURRENT 1400053
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-21-g883afb07
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
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PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for molden-6.7,1:
DATA=on: Install data files
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jmd@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/molden/work/.cache HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="c
c" CFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molden" EXAMPLESDIR="share/examples/molden" DATADIR="share/molden" WWWDIR="www/molden" ETCDIR="etc/molden"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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ARCH=amd64
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#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License Molden accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> molden-6.7,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-amd64-default-job-06] Installing pkg-1.17.5_1...
[main-amd64-default-job-06] Extracting pkg-1.17.5_1: .......... done
===> molden-6.7,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of molden-6.7,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===========================================================================
=======================<phase: checksum >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License Molden accepted by the user
===> Fetching all distfiles required by molden-6.7,1 for building
===> Extracting for molden-6.7,1
=> SHA256 Checksum OK for molden6.7.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for molden-6.7,1
===========================================================================
=======================<phase: build-depends >============================
===> molden-6.7,1 depends on executable: makedepend - not found
===> Installing existing package /packages/All/makedepend-1.0.6,1.pkg
[main-amd64-default-job-06] Installing makedepend-1.0.6,1...
[main-amd64-default-job-06] Extracting makedepend-1.0.6,1: ..... done
===> molden-6.7,1 depends on executable: makedepend - found
<snip>
src/xwin.c:87397:4: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ZERO,&ZERO,&ierr);
^
src/xwin.c:87416:2: warning: implicit declaration of function 'getmod_' is invalid in C99 [-Wimplicit-function-declaration]
getmod_(&igtmo,&ZERO,
^
src/xwin.c:87450:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
ispnd_(&irs,&i1,&irng,&ONE,&ONE,
^
src/xwin.c:87476:2: warning: implicit declaration of function 'calgad_' is invalid in C99 [-Wimplicit-function-declaration]
calgad_(&iasel,&ZERO,&istat,
^
src/xwin.c:87488:2: warning: implicit declaration of function 'wrmod_' is invalid in C99 [-Wimplicit-function-declaration]
wrmod_(&SEVENTYSEVEN,
^
src/xwin.c:87519:4: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:87681:2: warning: implicit declaration of function 'getmod_' is invalid in C99 [-Wimplicit-function-declaration]
getmod_(&igtmo,&iadd,
^
src/xwin.c:87723:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
ispnd_(&irs,&i1,&irng,&ONE,&ONE,
^
src/xwin.c:87750:2: warning: implicit declaration of function 'calgad_' is invalid in C99 [-Wimplicit-function-declaration]
calgad_(&iasel,&ZERO,&istat,
^
src/xwin.c:87765:2: warning: implicit declaration of function 'dotyd_' is invalid in C99 [-Wimplicit-function-declaration]
dotyd_(&icel,
^
src/xwin.c:87833:2: warning: implicit declaration of function 'gettnd_' is invalid in C99 [-Wimplicit-function-declaration]
gettnd_(&igttnk,&ZERO,&ipdbon,&iffset,&iheat,&heat,
^
src/xwin.c:87875:5: warning: implicit declaration of function 'ispnd_' is invalid in C99 [-Wimplicit-function-declaration]
ispnd_(&irs,&i1,&irng,&ONE,&ONE,
^
src/xwin.c:91637:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:91638:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:91654:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:91665:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:91678:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:91706:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:91913:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:91914:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:91940:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:91951:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:91964:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:91997:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92260:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:92261:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:92287:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:92298:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92311:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:92343:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92546:3: warning: implicit declaration of function 'cpkeyw_' is invalid in C99 [-Wimplicit-function-declaration]
cpkeyw_();
^
src/xwin.c:92547:3: warning: implicit declaration of function 'filop_' is invalid in C99 [-Wimplicit-function-declaration]
filop_(&SEVENTYSEVEN,&ONE,&ONE,&ZERO,&ierr);
^
src/xwin.c:92563:3: warning: implicit declaration of function 'cubtst_' is invalid in C99 [-Wimplicit-function-declaration]
cubtst_(&SEVENTYSEVEN,&ijag);
^
src/xwin.c:92574:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
src/xwin.c:92587:3: warning: implicit declaration of function 'filclo_' is invalid in C99 [-Wimplicit-function-declaration]
filclo_(&SEVENTYSEVEN);
^
src/xwin.c:92615:2: warning: implicit declaration of function 'rdpld_' is invalid in C99 [-Wimplicit-function-declaration]
rdpld_(&hlpsrf->nps1,&hlpsrf->nps2,&hlpsrf->nps3,&SEVENTYSEVEN,&istat,
^
683 warnings generated.
gmake -C src/ambfor FC=gfortran10 LDR="gfortran10 " EXT=""
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gfortran10 -c -g -ffast-math -funroll-loops -o ambfor.o ambfor.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o qvdw.o qvdw.f
cc -c -g -Wno-implicit-function-declaration -c alloc.c -o alloc.o
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o optimise.o optimise.f
773 warnings generated.
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o lbfgs.o lbfgs.f
gmake -C src/ambfor ambmd FC=gfortran10 LDR="gfortran10 " EXT=""
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o md.o md.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o angle.o angle.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o verlet.o verlet.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o bond.o bond.f
cc -c -g -Wno-implicit-function-declaration -DMD -c alloc.c -o allocmd.o
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o charge.o charge.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o bond.o bond.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o charge.o charge.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o conn.o conn.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o enegrd.o enegrd.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o conn.o conn.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o enegrd.o enegrd.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o getinp.o getinp.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o getinp.o getinp.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o param.o param.f
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o param.o param.f
param.f:15697:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15697 | call parptr(2,fdum,fdum,iatoms)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15699:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15699 | call parptr(4,fdum,fdum,mxnat)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15700:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15700 | call parptr(5,fdum,fdum,iwesc)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
gmake[2]: *** [<builtin>: param.o] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gmake[1]: *** [makefile:309: ambfor/ambfor] Error 2
gmake[1]: *** Waiting for unfinished jobs....
gfortran10 -c -g -ffast-math -funroll-loops -O3 -c -o tors.o tors.f
param.f:15697:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15697 | call parptr(2,fdum,fdum,iatoms)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15699:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15699 | call parptr(4,fdum,fdum,mxnat)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
param.f:15700:20:
15694 | call parptr(0,coo,fdum,idum)
| 2
.....
15700 | call parptr(5,fdum,fdum,iwesc)
| 1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
gmake[2]: *** [<builtin>: param.o] Error 1
gmake[2]: *** Waiting for unfinished jobs....
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7/src/ambfor'
gmake[1]: *** [makefile:313: ambfor/ambmd] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden6.7'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/molden