[package - 122amd64-quarterly][math/igraph] Failed for igraph-0.9.5 in build
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Date: Tue, 22 Mar 2022 01:09:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: wen@FreeBSD.org
Log URL: http://beefy2.nyi.freebsd.org/data/122amd64-quarterly/a1fa4d200bd5/logs/igraph-0.9.5.log
Build URL: http://beefy2.nyi.freebsd.org/build.html?mastername=122amd64-quarterly&build=a1fa4d200bd5
Log:
=>> Building math/igraph
build started at Tue Mar 22 01:08:30 UTC 2022
port directory: /usr/ports/math/igraph
package name: igraph-0.9.5
building for: FreeBSD 122amd64-quarterly-job-12 12.2-RELEASE-p14 FreeBSD 12.2-RELEASE-p14 amd64
maintained by: wen@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> igraph-0.9.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[122amd64-quarterly-job-12] Installing pkg-1.17.5...
[122amd64-quarterly-job-12] Extracting pkg-1.17.5: .......... done
===> igraph-0.9.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of igraph-0.9.5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.5 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.5 for building
=> SHA256 Checksum OK for igraph-igraph-0.9.5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by igraph-0.9.5 for building
===> Extracting for igraph-0.9.5
=> SHA256 Checksum OK for igraph-igraph-0.9.5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for igraph-0.9.5
===========================================================================
=======================<phase: build-depends >============================
===> igraph-0.9.5 depends on executable: bison - not found
===> Installing existing package /packages/All/bison-3.7.6,1.pkg
[122amd64-quarterly-job-12] Installing bison-3.7.6,1...
[122amd64-quarterly-job-12] `-- Installing gettext-runtime-0.21...
[122amd64-quarterly-job-12] | `-- Installing indexinfo-0.3.1...
[122amd64-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done
[122amd64-quarterly-job-12] `-- Extracting gettext-runtime-0.21: .......... done
[122amd64-quarterly-job-12] `-- Installing libtextstyle-0.21...
[122amd64-quarterly-job-12] `-- Extracting libtextstyle-0.21: .......... done
[122amd64-quarterly-job-12] `-- Installing m4-1.4.19,1...
[122amd64-quarterly-job-12] `-- Extracting m4-1.4.19,1: .......... done
[122amd64-quarterly-job-12] `-- Installing readline-8.1.1...
[122amd64-quarterly-job-12] `-- Extracting readline-8.1.1: .......... done
[122amd64-quarterly-job-12] Extracting bison-3.7.6,1: .......... done
===> igraph-0.9.5 depends on executable: bison - found
===> Returning to build of igraph-0.9.5
===> igraph-0.9.5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.22.1.pkg
[122amd64-quarterly-job-12] Installing cmake-3.22.1...
[122amd64-quarterly-job-12] `-- Installing curl-7.80.0...
<snip>
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/igraph/work/.build
-- Version number: 0.9.5
-- The C compiler identification is Clang 10.0.1
-- The CXX compiler identification is Clang 10.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG
-- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG - Success
-- Performing Test COMPILER_SUPPORTS_NO_UNKNOWN_WARNING_OPTION_FLAG
-- Performing Test COMPILER_SUPPORTS_NO_UNKNOWN_WARNING_OPTION_FLAG - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/local/lib/libopenblas.so
-- Found CXSparse: /usr/local/include/suitesparse (found version "3.2.0")
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/local/lib/libopenblas.so;-pthread;-lm;-ldl
-- Found ARPACK: /usr/local/lib/libarpack.so
-- Found GMP: /usr/local/lib/libgmp.so
-- Found OpenMP_C: -fopenmp=libomp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.12")
-- Found FLEX: /usr/bin/flex (found version "2.5.37")
-- Found BISON: /usr/local/bin/bison (found version "3.7.6")
-- Looking for expm1
-- Looking for expm1 - not found
-- Looking for fmin
-- Looking for fmin - not found
-- Looking for finite
-- Looking for finite - not found
-- Looking for isfinite
-- Looking for isfinite - found
-- Looking for log2
-- Looking for log2 - not found
-- Looking for log1p
-- Looking for log1p - not found
-- Looking for rint
-- Looking for rint - not found
-- Looking for rintf
-- Looking for rintf - not found
-- Looking for round
-- Looking for round - not found
-- Looking for stpcpy
-- Looking for stpcpy - found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for _stricmp
-- Looking for _stricmp - not found
-- Looking for _LIBCPP_VERSION
-- Looking for _LIBCPP_VERSION - found
-- Looking for __GLIBCXX__
-- Looking for __GLIBCXX__ - not found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Performing Test HAVE_ENABLE_NEW_DTAGS
-- Performing Test HAVE_ENABLE_NEW_DTAGS - Success
-- Disabling new dtags for testing to use RPATH to ensure the correct library is found.
-- Found Python3: /usr/local/bin/python3.8 (found version "3.8.12") found components: Interpreter
--
-- -----[ Build configuration ]----
-- Version: 0.9.5
-- CMake build type: Release
-- Library type: shared
--
-- ----------[ Features ]----------
-- GLPK for optimization: yes
-- Reading GraphML files: yes
-- Thread-local storage: no
-- Link-time optimization: no
--
-- --------[ Dependencies ]--------
-- ARPACK: yes
-- BISON: yes
-- BLAS: yes
-- CXSparse: yes
-- FLEX: yes
-- GLPK: yes
-- GMP: yes
-- LAPACK: yes
-- LibXml2: yes
-- OpenMP: yes
--
-- -----------[ Testing ]----------
-- Diff tool: diff
-- Sanitizers: none
-- Code coverage: no
-- Verify 'finally' stack: no
--
-- --------[ Documentation ]-------
-- HTML: no
-- PDF: no
--
-- igraph configured successfully.
--
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/math/igraph/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for igraph-0.9.5
[ 0% 1/276] cd /wrkdirs/usr/ports/math/igraph/work/.build/src && /usr/local/bin/bison --no-lines -Wno-deprecated -d -o /wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/dl-parser.c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/dl-parser.y
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/dl-parser.y: warning: 20 shift/reduce conflicts [-Wconflicts-sr]
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/dl-parser.y: warning: 3 reduce/reduce conflicts [-Wconflicts-rr]
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/dl-parser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[ 0% 2/276] cd /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src && /usr/bin/flex --noline --header-file=/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/dl-lexer.h -o/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/dl-lexer.c io/dl-lexer.l
[ 1% 3/276] cd /wrkdirs/usr/ports/math/igraph/work/.build/src && /usr/local/bin/bison --no-lines -Wno-deprecated -d -o /wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/gml-parser.c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/gml-parser.y
[ 1% 4/276] cd /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src && /usr/bin/flex --noline --header-file=/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/gml-lexer.h -o/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/gml-lexer.c io/gml-lexer.l
[ 1% 5/276] cd /wrkdirs/usr/ports/math/igraph/work/.build/src && /usr/local/bin/bison --no-lines -Wno-deprecated -d -o /wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/lgl-parser.c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/lgl-parser.y
[ 2% 6/276] cd /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src && /usr/bin/flex --noline --header-file=/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/lgl-lexer.h -o/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/lgl-lexer.c io/lgl-lexer.l
[ 2% 7/276] cd /wrkdirs/usr/ports/math/igraph/work/.build/src && /usr/local/bin/bison --no-lines -Wno-deprecated -d -o /wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/ncol-parser.c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/ncol-parser.y
[ 2% 8/276] cd /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src && /usr/bin/flex --noline --header-file=/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/ncol-lexer.h -o/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/ncol-lexer.c io/ncol-lexer.l
[ 3% 9/276] cd /wrkdirs/usr/ports/math/igraph/work/.build/src && /usr/local/bin/bison --no-lines -Wno-deprecated -d -o /wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/pajek-parser.c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/pajek-parser.y
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/pajek-parser.y: warning: 6 shift/reduce conflicts [-Wconflicts-sr]
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/io/pajek-parser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[ 3% 10/276] cd /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src && /usr/bin/flex --noline --header-file=/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/pajek-lexer.h -o/wrkdirs/usr/ports/math/igraph/work/.build/src/io/parsers/pajek-lexer.c io/pajek-lexer.l
[ 3% 11/276] /usr/bin/cc -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/misc/motifs.c\" -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/.build/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor -I/usr/local/include/suitesparse -I/usr/local/include -I/usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -std=gnu99 -MD -MT src/CMakeFiles/igraph.dir/misc/motifs.c.o -MF src/CMakeFiles/igraph.dir/misc/motifs.c.o.d -o src/CMakeFiles/igraph.dir/misc/motifs.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/
misc/motifs.c
[ 4% 12/276] /usr/bin/cc -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/misc/other.c\" -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/.build/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor -I/usr/local/include/suitesparse -I/usr/local/include -I/usr/local/include/libxml2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -std=gnu99 -MD -MT src/CMakeFiles/igraph.dir/misc/other.c.o -MF src/CMakeFiles/igraph.dir/misc/other.c.o.d -o src/CMakeFiles/igraph.dir/misc/other.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/misc
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[ 13% 37/276] /usr/bin/c++ -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/include -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/.build/src -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -Wno-unused-variable -std=gnu++11 -MD -MT src/isomorphism/bliss/CMakeFiles/bliss.dir/heap.cc.o -MF src/isomorphism/bliss/CMakeFiles/bliss.dir/heap.cc.o.d -o src/isomorphism/bliss/CMakeFiles/bliss.dir/heap.cc.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/isomorphism/bliss/heap.cc
[ 13% 38/276] /usr/bin/c++ -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/include -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor -I/wrkdirs/usr/ports/math/igraph/work/.build/include -I/wrkdirs/usr/ports/math/igraph/work/.build/src -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -Wno-unused-variable -std=gnu++11 -MD -MT src/isomorphism/bliss/CMakeFiles/bliss.dir/orbit.cc.o -MF src/isomorphism/bliss/CMakeFiles/bliss.dir/orbit.cc.o.d -o src/isomorphism/bliss/CMakeFiles/bliss.dir/orbit.cc.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/src/isomorphism/bliss/orbit.cc
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FAILED: vendor/plfit/CMakeFiles/plfit.dir/plfit.c.o
/usr/bin/cc -DIGRAPH_STATIC -I/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/include -I/wrkdirs/usr/ports/math/igraph/work/.build/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fvisibility=hidden -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -Wno-unknown-warning-option -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/plfit.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/plfit.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/plfit.c.o -c /wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor/plfit/plfit.c
/wrkdirs/usr/ports/math/igraph/work/igraph-0.9.5/vendor/plfit/plfit.c:750:9: error: '_Generic' is a C11 extension [-Werror,-Wc11-extensions]
if (isnan(*x)) {
^
/usr/include/math.h:114:2: note: expanded from macro 'isnan'
__fp_type_select(x, __inline_isnanf, __inline_isnan, __inline_isnanl)
^
/usr/include/math.h:82:39: note: expanded from macro '__fp_type_select'
#define __fp_type_select(x, f, d, ld) _Generic((x), \
^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/igraph