From nobody Thu Mar 03 11:37:18 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 54D1719F2ADA for ; Thu, 3 Mar 2022 11:37:19 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4K8TVR0WJjz4pSS for ; Thu, 3 Mar 2022 11:37:19 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (beefy12.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1b]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id E71FD16F3F for ; Thu, 3 Mar 2022 11:37:18 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (localhost [127.0.0.1]) by beefy12.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 223BbIKh088273 for ; Thu, 3 Mar 2022 11:37:18 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy12.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 223BbI4A088272; Thu, 3 Mar 2022 11:37:18 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 3 Mar 2022 11:37:18 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202203031137.223BbI4A088272@beefy12.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv7-quarterly][biology/ngs-sdk] Failed for ngs-sdk-2.11.1 in build ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1646307439; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=lzSMN+0HkeaGz/MEvQjQ6Tt4rT6k++dIIKBPgSGu6CI=; b=nf2uxhvziGnAD4Z/d5MGFgElR/Bed3046HRxRmOo8SJeNhM/7KxeZbg+pFfH6RS+2YJYbw jliDhkDW3QYd+DcoEAEjhmwatoso3sLMwn82Nv8iyigaSUp/P3jdjsxJ/3m6FShFv589lg TCZhIoBPUIOnp7uNbFxZX8z/XOHw7IUnHywZ+Q1YNefmYlkhC5/C39H8cMaU10HAbIGZD0 i4R79dDAaBwg61KQe8TSdSHJtkFeiEe9VbbbMaihdbWWWOmZv+HEUZ9cBAR66/Ve1n9Dhm DJDX4K23vRR0KEkI7ioh4ESdvGCviWxCA50Xwpj8FMOpk8c3sOW58cvmklh7bQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1646307439; a=rsa-sha256; cv=none; b=A42xlXozLYtLhaHGt6RvPeam04kivc5YmriyHUHrmSt7pAUYrfqJu1004bRpD90koMSqbo Tl87rW/mPtDa+TsIUb7Q9VVbYCqgyKRnzSjowrqbBrIbPkOyuur+yfe93FG83Uvzauazec cdPhU9k6nUUrFXh88SR2hOEAw+BV1PYgT4fZmCLX22VVcBskpavM2dGYwBnVNU35X5Wd9h LQBSH3HV5RQ+kelh9oDpWSeuqn9AlJ79Z+V28DrN10pMRGj2JvT7axO2twOBCwXOHLt3m2 0W/feOIcSnPVJICSoZ+X2ghKaZoO+k9sTiyp/R7JdtQ2h/ne+cxz7TNtN0qQnA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy12.nyi.freebsd.org/data/130releng-armv7-quarterly/112b9ed5c6d3/logs/ngs-sdk-2.11.1.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=130releng-armv7-quarterly&build=112b9ed5c6d3 Log: =>> Building biology/ngs-sdk build started at Thu Mar 3 11:37:02 UTC 2022 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-2.11.1 building for: FreeBSD 130releng-armv7-quarterly-job-10 13.0-RELEASE-p7 FreeBSD 13.0-RELEASE-p7 1300139 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1300139 Job Id: 10 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p7 1300139 UNAME_r=13.0-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p7 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ngs-sdk-2.11.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5.pkg [130releng-armv7-quarterly-job-10] Installing pkg-1.17.5... [130releng-armv7-quarterly-job-10] Extracting pkg-1.17.5: .......... done ===> ngs-sdk-2.11.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-2.11.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.1 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.1 for building => SHA256 Checksum OK for ncbi-ngs-2.11.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.1 for building ===> Extracting for ngs-sdk-2.11.1 => SHA256 Checksum OK for ncbi-ngs-2.11.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ngs-sdk-2.11.1 ===> Applying FreeBSD patches for ngs-sdk-2.11.1 from /usr/ports/biology/ngs-sdk/files =========================================================================== =================================================== ===> ngs-sdk-2.11.1 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.pkg [130releng-armv7-quarterly-job-10] Installing gmake-4.3_2... [130releng-armv7-quarterly-job-10] `-- Installing gettext-runtime-0.21... [130releng-armv7-quarterly-job-10] | `-- Installing indexinfo-0.3.1... [130releng-armv7-quarterly-job-10] | `-- Extracting indexinfo-0.3.1: .... done [130releng-armv7-quarterly-job-10] `-- Extracting gettext-runtime-0.21: .......... done [130releng-armv7-quarterly-job-10] Extracting gmake-4.3_2: .......... done ===> ngs-sdk-2.11.1 depends on package: gmake>=4.3 - found ===> Returning to build of ngs-sdk-2.11.1 ===> ngs-sdk-2.11.1 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_1.pkg [130releng-armv7-quarterly-job-10] Installing perl5-5.32.1_1... [130releng-armv7-quarterly-job-10] Extracting perl5-5.32.1_1: .......... done ===> ngs-sdk-2.11.1 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of ngs-sdk-2.11.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for ngs-sdk-2.11.1 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' =========================================================================== =================================================== ===> Building for ngs-sdk-2.11.1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk' *** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk' gmake[1]: *** [Makefile:54: ngs-sdk] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1' *** Error code 1 Stop. make: stopped in /usr/ports/biology/ngs-sdk