[package - 130releng-riscv64-quarterly][biology/pooler] Failed for pooler-1.84 in build
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Date: Sat, 25 Jun 2022 05:02:32 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ssb22@cam.ac.uk
Log URL: http://beefy7.nyi.freebsd.org/data/130releng-riscv64-quarterly/df2a077922c4/logs/pooler-1.84.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=130releng-riscv64-quarterly&build=df2a077922c4
Log:
=>> Building biology/pooler
build started at Sat Jun 25 05:02:26 UTC 2022
port directory: /usr/ports/biology/pooler
package name: pooler-1.84
building for: FreeBSD 130releng-riscv64-quarterly-job-11 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 1300139 riscv
maintained by: ssb22@cam.ac.uk
Makefile ident:
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ssb22@cam.ac.uk
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> pooler-1.84 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[130releng-riscv64-quarterly-job-11] Installing pkg-1.17.5_1...
[130releng-riscv64-quarterly-job-11] Extracting pkg-1.17.5_1: .......... done
===> pooler-1.84 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pooler-1.84
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.84 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.84 for building
=> SHA256 Checksum OK for ssb22-PrimerPooler-v1.84_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.84 for building
===> Extracting for pooler-1.84
=> SHA256 Checksum OK for ssb22-PrimerPooler-v1.84_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pooler-1.84
===========================================================================
=======================<phase: build-depends >============================
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for pooler-1.84
===========================================================================
=======================<phase: build >============================
===> Building for pooler-1.84
chmod +w 128.h 2>/dev/null || true
sed -e s/64/128/g < 64.h > 128.h
chmod -w 128.h
chmod +w 32.h 2>/dev/null || true
sed -e s/64/32/g < 64.h > 32.h
chmod -w 32.h
chmod +w 32-64.h 2>/dev/null || true
sed -e s/64/32/g -e s/128/64/g < 64-128.h > 32-64.h
chmod -w 32-64.h
$(sh -c 'case "$OSTYPE" in darwin*) [ "/nxb-bin/usr/bin/cc" = cc ] && gcc --version 2>/dev/null >/dev/null ;; *) false ;; esac' && echo gcc || echo "/nxb-bin/usr/bin/cc") -O2 -pipe -march=rv64imafdc -mabi=lp64d -fopenmp -fstack-protector-strong -fno-strict-aliasing $(echo 'int main(){}' > _test.c; if $(sh -c 'case "$OSTYPE" in darwin*) [ "/nxb-bin/usr/bin/cc" = cc ] && gcc --version 2>/dev/null >/dev/null ;; *) false ;; esac' && echo gcc || echo "/nxb-bin/usr/bin/cc") -fopenmp _test.c -o /dev/null 2>/dev/null; then echo -fopenmp; fi; rm _test.c) *.c -o pooler -lm
In file included from bit-common.c:63:
In file included from ./bit-choice.h:23:
In file included from ./triangle.h:44:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
In file included from genome.c:28:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
In file included from pool-split.c:25:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.84/pooler
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/pooler