[package - main-i386-default][science/meep] Failed for meep-1.24.0 in build
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Date: Wed, 27 Jul 2022 03:48:30 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p83aeeda2ebb7_s30253da1a9/logs/meep-1.24.0.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p83aeeda2ebb7_s30253da1a9
Log:
=>> Building science/meep
build started at Wed Jul 27 03:47:01 UTC 2022
port directory: /usr/ports/science/meep
package name: meep-1.24.0
building for: FreeBSD main-i386-default-job-12 14.0-CURRENT FreeBSD 14.0-CURRENT 1400064 i386
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400063
Jail OSVERSION: 1400064
Job Id: 12
!!! Jail is newer than host. (Jail: 1400064, Host: 1400063) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[main-i386-default-job-12] Installing pkg-1.18.3...
[main-i386-default-job-12] Extracting pkg-1.18.3: .......... done
===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of meep-1.24.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
=> NanoComp-meep-v1.24.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/NanoComp/meep/tar.gz/v1.24.0?dummy=/NanoComp-meep-v1.24.0_GH0.tar.gz
fetch: https://codeload.github.com/NanoComp/meep/tar.gz/v1.24.0?dummy=/NanoComp-meep-v1.24.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/NanoComp/meep/tar.gz/v1.24.0?dummy=/NanoComp-meep-v1.24.0_GH0.tar.gz: size of remote file is not known
NanoComp-meep-v1.24.0_GH0.tar.gz 39 MB 15 MBps 03s
===> Fetching all distfiles required by meep-1.24.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by meep-1.24.0 for building
=> SHA256 Checksum OK for NanoComp-meep-v1.24.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by meep-1.24.0 for building
===> Extracting for meep-1.24.0
=> SHA256 Checksum OK for NanoComp-meep-v1.24.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for meep-1.24.0
===========================================================================
=======================<phase: build-depends >============================
<snip>
*** in your path, or set the PKG_CONFIG environment variable
*** to the full path to pkg-config.
*** Or see http://www.freedesktop.org/software/pkgconfig to get pkg-config.
checking for harminv_get_freq_error in -lharminv... yes
checking for mpb.h... no
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... no
checking for gsl_sf_bessel_Jn in -lgsl... no
configure: WARNING: Missing GNU GSL library...Bessel-function field initialization will not be supported.
checking for deflate in -lz... (cached) yes
checking for H5Pcreate in -lhdf5... yes
checking for H5Pcreate... yes
checking for hdf5.h... yes
checking for H5Pset_mpi... no
checking for H5Pset_fapl_mpio... no
checking for vector3_dot in -lctlgeom... yes
checking for libGDSII.h... no
checking for feenableexcept... yes
checking whether feenableexcept declaration is usable... yes
checking whether to catch and ignore SIGFPE signals... no
checking for sys/time.h... (cached) yes
checking for immintrin.h... yes
checking for BSDgettimeofday... no
checking for gettimeofday... (cached) yes
checking for cblas_ddot... yes
checking for cblas_daxpy... yes
checking for jn... yes
checking for C/C++ restrict keyword... no
checking for swig... echo
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating meep-pkgconfig
config.status: creating src/Makefile
config.status: creating src/support/Makefile
config.status: creating tests/Makefile
config.status: creating src/meep/meep-config.h
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build >============================
===> Building for meep-1.24.0
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0'
gmake all-recursive
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0'
Making all in src
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
make sphere_quad
(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp
make[4]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT sphere-quad.o -MD -MP -MF .deps/sphere-quad.Tpo -c -o sphere-quad.o sphere-quad.cpp
mv -f .deps/sphere-quad.Tpo .deps/sphere-quad.Po
/bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong -o sphere_quad sphere-quad.o -lctlgeom -lhdf5 -lz -lm -lharminv -lopenblas -lopenblas -lfftw3 -lm -L/usr/local/lib -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0 -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../../../../i386-portbld-freebsd14.0/lib -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../.. -lfftw3 -lgfortran -lm -lssp_nonshared -lquadmath -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0 -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../../../../i386-portbld-freebsd14.0/lib -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/
../../.. -lfftw3 -lgfortran -lm -lssp_nonshared -lquadmath
libtool: link: c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong -o sphere_quad sphere-quad.o -L/usr/local/lib/gcc11 -lctlgeom -lhdf5 -lz -lharminv -lopenblas -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0 -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../../../../i386-portbld-freebsd14.0/lib -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../.. -lfftw3 -lgfortran -lm -lssp_nonshared -lquadmath
make[4]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h
gmake all-recursive
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
Making all in support
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src/support'
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c -o mt19937ar.lo mt19937ar.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c mt19937ar.c -o mt19937ar.o >/dev/null 2>&1
mv -f .deps/mt19937ar.Tpo .deps/mt19937ar.Plo
/bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -fstack-protector-strong -o libsupport.la mt19937ar.lo -lctlgeom -lhdf5 -lz -lm -lharminv -lopenblas -lopenblas -lfftw3 -lm -L/usr/local/lib -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0 -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../../../../i386-portbld-freebsd14.0/lib -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../.. -lfftw3 -lgfortran -lm -lssp_nonshared -lquadmath -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0 -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../../../../i386-portbld-freebsd14.0/lib -L/usr/local/lib/gcc11/gcc/i386-portbld-freebsd14.0/11.3.0/../../.. -lfftw3 -lgfortr
an -lm -lssp_nonshared -lquadmath
libtool: link: /usr/local/bin/ar cr .libs/libsupport.a .libs/mt19937ar.o
libtool: link: /usr/local/bin/ranlib .libs/libsupport.a
libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" )
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src/support'
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT array_slice.lo -MD -MP -MF .deps/array_slice.Tpo -c -o array_slice.lo array_slice.cpp
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anisotropic_averaging.lo -MD -MP -MF .deps/anisotropic_averaging.Tpo -c -o anisotropic_averaging.lo anisotropic_averaging.cpp
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT array_slice.lo -MD -MP -MF .deps/array_slice.Tpo -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anisotropic_averaging.lo -MD -MP -MF .deps/anisotropic_averaging.Tpo -c anisotropic_averaging.cpp -fPIC -DPIC -o .libs/anisotropic_averaging.o
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT anisotropic_averaging.lo -MD -MP -MF .deps/anisotropic_averaging.Tpo -c anisotropic_averaging.cpp -o anisotropic_averaging.o >/dev/null 2>&1
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT array_slice.lo -MD -MP -MF .deps/array_slice.Tpo -c array_slice.cpp -o array_slice.o >/dev/null 2>&1
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dft.cpp:906:126: warning: format specifies type 'unsigned long' but the argument has type 'std::vector<double>::size_type' (aka 'unsigned int') [-Wformat]
meep::abort("process_dft_component: frequency index %d is outside the range of the frequency array of size %lu",num_freq,omega.size());
~~~ ^~~~~~~~~~~~
%u
dft.cpp:1313:88: warning: format specifies type 'unsigned long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
if (!real_array) meep::abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, array_size);
~~~ ^~~~~~~~~~
%zu
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mympi.cpp:168:26: error: '_mm_getcsr' needs target feature sse
unsigned int state = _mm_getcsr();
^
mympi.cpp:173:5: error: '_mm_setcsr' needs target feature sse
_mm_setcsr(state);
^
2 errors generated.
gmake[5]: *** [Makefile:667: mympi.lo] Error 1
gmake[5]: *** Waiting for unfinished jobs....
multilevel-atom.cpp:138:78: warning: format specifies type 'unsigned long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
if (d == NULL) meep::abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz);
~~~ ^~
%zu
1 warning generated.
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT multilevel-atom.lo -MD -MP -MF .deps/multilevel-atom.Tpo -c multilevel-atom.cpp -o multilevel-atom.o >/dev/null 2>&1
mv -f .deps/multilevel-atom.Tpo .deps/multilevel-atom.Plo
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
gmake[4]: *** [Makefile:728: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
gmake[3]: *** [Makefile:511: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0/src'
gmake[2]: *** [Makefile:518: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0'
gmake[1]: *** [Makefile:425: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/meep/work/meep-1.24.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/meep