From nobody Sat Jul 23 08:40:09 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4LqfrT6Lz0z4X5JK for ; Sat, 23 Jul 2022 08:40:09 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4LqfrT3yM0z3bTY for ; Sat, 23 Jul 2022 08:40:09 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4LqfrT317WzYp5 for ; Sat, 23 Jul 2022 08:40:09 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from ampere3.nyi.freebsd.org (localhost [127.0.0.1]) by ampere3.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 26N8e9Qm014153 for ; Sat, 23 Jul 2022 08:40:09 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by ampere3.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 26N8e9Yb014152; Sat, 23 Jul 2022 08:40:09 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sat, 23 Jul 2022 08:40:09 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202207230840.26N8e9Yb014152@ampere3.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv7-default][biology/ngs-sdk] Failed for ngs-sdk-2.11.2 in build ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1658565609; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=0lS6OxVGBf8woUhbJk69+EkY0rFLvPhPxFeFQltGr1g=; b=kTt2Lvl5eBBKPCvf1LbD+hlc3b1PWHkVfzX4cXvhsSbbES8mBV1328QA72uM7m/EfJ8CdI +p4rcL8kBXgC7Hn6DWSTVQgqSo7Cpwha0JYGEFnaQlY3UrMASg5mCAMsCU0fEf96qKT63a EAuP4nNaFPrprG2RWQprBOn7SMq7C1WrbM3E0QkIa4/TH4RsgfxVPDDNWbikvsT+qbFi7x mhbpKEPxcFESxsDl+ZXVZy7Vv+aL9R/HCxVsrmj070akJ51fBJYT2hbxBCGwpcRgeF4x9N lAMEkMraIvoG/+nnfBZRoClj4KzaD6/gnS2gnkKb1k+TmmueAOSB9fikt3/reA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1658565609; a=rsa-sha256; cv=none; b=dcK9pcPwpgkuFw3EzxpruZegwfIGn6JEYhH1m6KFuIlUOBbmhdSMBv8IfTUv6IMFhJ3HE0 3B0aQBhnJ5L8hUYKwOdOsrHNd7qkpCWVYpLinI0XmMsVkQNn/uI6v6RZlQEoCQ71Gt8sCz mJgfmrXkNu6O7PX7VdNuAlo5J5vg5ztJkM7Fl7XpweH0yXjh/petHcnlwmPIBuqkVgLVUK nQ07+3jzUT5eevNKffZB2R8j8I5uGlfg6Fl0RivEyGDUoKxApqMRUwH5kOvMA2JJpU4Z1L 8oR90D+JHyTABhJ6O2q88DvWGtURQ4i/vW91HIYEGDDbSOCCMZvdrKJIBb1gLQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://ampere3.nyi.freebsd.org/data/130releng-armv7-default/a51002eeb3d0/logs/ngs-sdk-2.11.2.log Build URL: http://ampere3.nyi.freebsd.org/build.html?mastername=130releng-armv7-default&build=a51002eeb3d0 Log: =>> Building biology/ngs-sdk build started at Sat Jul 23 08:39:59 UTC 2022 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-2.11.2 building for: FreeBSD 130releng-armv7-default-job-01 13.0-RELEASE-p11 FreeBSD 13.0-RELEASE-p11 1300139 arm maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1300139 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p11 1300139 UNAME_r=13.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA ="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p11 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ngs-sdk-2.11.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.3.pkg [130releng-armv7-default-job-01] Installing pkg-1.18.3... [130releng-armv7-default-job-01] Extracting pkg-1.18.3: .......... done ===> ngs-sdk-2.11.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-2.11.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user => ncbi-ngs-2.11.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/ncbi/ngs/tar.gz/2.11.2?dummy=/ncbi-ngs-2.11.2_GH0.tar.gz fetch: https://codeload.github.com/ncbi/ngs/tar.gz/2.11.2?dummy=/ncbi-ngs-2.11.2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/ncbi/ngs/tar.gz/2.11.2?dummy=/ncbi-ngs-2.11.2_GH0.tar.gz: size of remote file is not known ncbi-ngs-2.11.2_GH0.tar.gz 1075 kB 2782 kBps 00s ===> Fetching all distfiles required by ngs-sdk-2.11.2 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.2 for building => SHA256 Checksum OK for ncbi-ngs-2.11.2_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ngs-sdk-2.11.2 for building ===> Extracting for ngs-sdk-2.11.2 => SHA256 Checksum OK for ncbi-ngs-2.11.2_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ngs-sdk-2.11.2 ===> Applying FreeBSD patches for ngs-sdk-2.11.2 from /usr/ports/biology/ngs-sdk/files =========================================================================== =================================================== ===> ngs-sdk-2.11.2 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.pkg [130releng-armv7-default-job-01] Installing gmake-4.3_2... [130releng-armv7-default-job-01] `-- Installing gettext-runtime-0.21... [130releng-armv7-default-job-01] | `-- Installing indexinfo-0.3.1... [130releng-armv7-default-job-01] | `-- Extracting indexinfo-0.3.1: .... done [130releng-armv7-default-job-01] `-- Extracting gettext-runtime-0.21: .......... done [130releng-armv7-default-job-01] Extracting gmake-4.3_2: .......... done ===> ngs-sdk-2.11.2 depends on package: gmake>=4.3 - found ===> Returning to build of ngs-sdk-2.11.2 ===> ngs-sdk-2.11.2 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.1_1.pkg [130releng-armv7-default-job-01] Installing perl5-5.32.1_1... [130releng-armv7-default-job-01] Extracting perl5-5.32.1_1: .......... done ===> ngs-sdk-2.11.2 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of ngs-sdk-2.11.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for ngs-sdk-2.11.2 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... FreeBSD checking machine architecture... arm configure: error: unsupported architecture 'FreeBSD':'arm' =========================================================================== =================================================== ===> Building for ngs-sdk-2.11.2 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2/ngs-sdk' *** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2/ngs-sdk' gmake[1]: *** [Makefile:54: ngs-sdk] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.2' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/ngs-sdk