[package - main-armv6-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.12.0_6 in build
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Date: Thu, 14 Jul 2022 02:35:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: http://beefy8.nyi.freebsd.org/data/main-armv6-default/pabc0f88242a2_sd4a11b3e3b/logs/ncbi-blast+-2.12.0_6.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=pabc0f88242a2_sd4a11b3e3b
Log:
=>> Building biology/ncbi-blast+
build started at Thu Jul 14 01:52:22 UTC 2022
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.12.0_6
building for: FreeBSD main-armv6-default-job-07 14.0-CURRENT FreeBSD 14.0-CURRENT 1400063 arm
maintained by: jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-blast+-2.12.0_6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.18.3.pkg
[main-armv6-default-job-07] Installing pkg-1.18.3...
[main-armv6-default-job-07] Extracting pkg-1.18.3: .......... done
===> ncbi-blast+-2.12.0_6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.12.0_6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.12.0_6 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.12.0_6 for building
=> SHA256 Checksum OK for ncbi-blast-2.12.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.12.0_6 for building
===> Extracting for ncbi-blast+-2.12.0_6
=> SHA256 Checksum OK for ncbi-blast-2.12.0+-src.tar.gz.
===========================================================================
<snip>
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/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o
/bin/rm -f libdbapi.a .libdbapi.a.stamp
ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi.a
/bin/ln -f .dbapi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi.dep
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi'
/usr/local/bin/gmake -C driver -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver'
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/util/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT util/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ctlib/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds95/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds100/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT ftds-default/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/mysql/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT mysql/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/samples/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT samples/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/driver_mgr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/pointer_pot.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/memory_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/types.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/public.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/interfaces.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/exception.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/parameters.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/numeric_convert.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp.
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/public.cpp -o public.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/types.cpp -o types.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=e9d2d96e-0317-11ed-a5a5-a5a5a5a5a5a5 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o
/bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp
ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a
/bin/ln -f .dbapi_driver.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep
/bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp
/nxb-bin/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -L/usr/local/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib
/bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so
/bin/ln -f .dbapi_driver-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep
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/usr/local/bin/gmake -C mysql -w all_r || exit 5
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NOTE: Skipping project odbc due to unmet requirements:
ODBC
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/bin/echo 'Warning: non-existent sub-project "samples"'
Warning: non-existent sub-project "samples"
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc'
/usr/local/bin/gmake -C samples -w all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver/samples'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/driver'
/usr/local/bin/gmake -C simple -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/simple'
/usr/local/bin/gmake -C lang_bind -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/lang_bind'
/usr/local/bin/gmake -C test -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi/test'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/dbapi'
/usr/local/bin/gmake -C objects -w all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects -w all
Platform not defined for FreeBSD arm -- please fix me
libunwind: personality function returned unknown result 5
libunwind: _Unwind_Resume - _Unwind_Resume() can't return
gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module:42: omssa.files] Segmentation fault (core dumped)
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/Makefile.sources:24: all] Error 2
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects || exit 2; \
for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \
if test -f "$i/$i.asn"; then \
MAKE="/usr/local/bin/gmake -w"; export MAKE; \
( cd $i && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \
|| case "-w" in *k*) ;; *) exit 2 ;; esac; \
else \
echo "Warning: $i/$i.asn not found (skipping)"; \
fi; \
done
/usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src all
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa'
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++ \
-opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \
-oc omssa -or objects/omssa -odi -od omssa.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/objects/omssa'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
FAILED: src/objects/Makefile.sources
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:299: sources.usr] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_l:310: sources.usr.locked] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build/objects'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.12.0+-src/c++'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+