[package - 130amd64-default][science/py-nilearn] Failed for py38-nilearn-0.8.1 in stage
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Date: Thu, 06 Jan 2022 15:18:31 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy16.nyi.freebsd.org/data/130amd64-default/56861672cc15/logs/py38-nilearn-0.8.1.log
Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=130amd64-default&build=56861672cc15
Log:
=>> Building science/py-nilearn
build started at Thu Jan 6 15:18:05 UTC 2022
port directory: /usr/ports/science/py-nilearn
package name: py38-nilearn-0.8.1
building for: FreeBSD 130amd64-default-job-15 13.0-RELEASE-p5 FreeBSD 13.0-RELEASE-p5 amd64
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-nilearn-0.8.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[130amd64-default-job-15] Installing pkg-1.17.5...
[130amd64-default-job-15] Extracting pkg-1.17.5: .......... done
===> py38-nilearn-0.8.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-nilearn-0.8.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-nilearn-0.8.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-nilearn-0.8.1 for building
=> SHA256 Checksum OK for nilearn-0.8.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py38-nilearn-0.8.1 for building
===> Extracting for py38-nilearn-0.8.1
=> SHA256 Checksum OK for nilearn-0.8.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-nilearn-0.8.1
===========================================================================
=======================<phase: build-depends >============================
===> py38-nilearn-0.8.1 depends on package: py38-setuptools>0 - not found
===> Installing existing package /packages/All/py38-setuptools-57.0.0.pkg
[130amd64-default-job-15] Installing py38-setuptools-57.0.0...
[130amd64-default-job-15] `-- Installing python38-3.8.12_1...
[130amd64-default-job-15] | `-- Installing gettext-runtime-0.21...
[130amd64-default-job-15] | | `-- Installing indexinfo-0.3.1...
[130amd64-default-job-15] | | `-- Extracting indexinfo-0.3.1: .... done
[130amd64-default-job-15] | `-- Extracting gettext-runtime-0.21: .......... done
[130amd64-default-job-15] | `-- Installing libffi-3.3_1...
[130amd64-default-job-15] | `-- Extracting libffi-3.3_1: .......... done
[130amd64-default-job-15] | `-- Installing mpdecimal-2.5.1...
[130amd64-default-job-15] | `-- Extracting mpdecimal-2.5.1: .......... done
[130amd64-default-job-15] | `-- Installing readline-8.1.1...
[130amd64-default-job-15] | `-- Extracting readline-8.1.1: .......... done
[130amd64-default-job-15] `-- Extracting python38-3.8.12_1: .......... done
[130amd64-default-job-15] Extracting py38-setuptools-57.0.0: .......... done
=====
Message from python38-3.8.12_1:
<snip>
[130amd64-default-job-15] | `-- Extracting expat-2.4.2: .......... done
[130amd64-default-job-15] | `-- Installing freetype2-2.11.1...
[130amd64-default-job-15] | | `-- Installing png-1.6.37_1...
[130amd64-default-job-15] | | `-- Extracting png-1.6.37_1: .......... done
[130amd64-default-job-15] | `-- Extracting freetype2-2.11.1: .......... done
[130amd64-default-job-15] `-- Extracting fontconfig-2.13.94_1,1: .......... done
Running fc-cache to build fontconfig cache...
Font directories:
/usr/local/share/fonts
/usr/local/lib/X11/fonts
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
[130amd64-default-job-15] `-- Installing py38-cycler-0.11.0...
[130amd64-default-job-15] `-- Extracting py38-cycler-0.11.0: .......... done
[130amd64-default-job-15] `-- Installing py38-dateutil-2.8.1...
[130amd64-default-job-15] `-- Extracting py38-dateutil-2.8.1: .......... done
[130amd64-default-job-15] `-- Installing py38-kiwisolver-1.3.2,1...
[130amd64-default-job-15] `-- Extracting py38-kiwisolver-1.3.2,1: ........ done
[130amd64-default-job-15] `-- Installing py38-pillow-8.2.0...
[130amd64-default-job-15] | `-- Installing jpeg-turbo-2.1.1_1...
[130amd64-default-job-15] | `-- Extracting jpeg-turbo-2.1.1_1: .......... done
[130amd64-default-job-15] | `-- Installing lcms2-2.12...
[130amd64-default-job-15] | | `-- Installing tiff-4.3.0...
[130amd64-default-job-15] | | `-- Installing jbigkit-2.1_1...
[130amd64-default-job-15] | | `-- Extracting jbigkit-2.1_1: .......... done
[130amd64-default-job-15] | | `-- Extracting tiff-4.3.0: .......... done
[130amd64-default-job-15] | `-- Extracting lcms2-2.12: .......... done
[130amd64-default-job-15] | `-- Installing libraqm-0.7.1...
[130amd64-default-job-15] | | `-- Installing fribidi-1.0.11...
[130amd64-default-job-15] | | `-- Extracting fribidi-1.0.11: .......... done
[130amd64-default-job-15] | | `-- Installing harfbuzz-3.2.0...
[130amd64-default-job-15] | | `-- Installing glib-2.70.2,2...
[130amd64-default-job-15] | | | `-- Installing libiconv-1.16...
[130amd64-default-job-15] | | | `-- Extracting libiconv-1.16: .......... done
[130amd64-default-job-15] | | | `-- Installing pcre-8.45...
[130amd64-default-job-15] | | | `-- Extracting pcre-8.45: .......... done
[130amd64-default-job-15] | | `-- Extracting glib-2.70.2,2: .......... done
No schema files found: doing nothing.
[130amd64-default-job-15] | | `-- Installing graphite2-1.3.14...
[130amd64-default-job-15] | | `-- Extracting graphite2-1.3.14: .......... done
[130amd64-default-job-15] | | `-- Extracting harfbuzz-3.2.0: .......... done
[130amd64-default-job-15] | `-- Extracting libraqm-0.7.1: .......... done
[130amd64-default-job-15] | `-- Installing libxcb-1.14_1...
[130amd64-default-job-15] | | `-- Installing libXau-1.0.9...
[130amd64-default-job-15] | | `-- Extracting libXau-1.0.9: .......... done
[130amd64-default-job-15] | | `-- Installing libXdmcp-1.1.3...
[130amd64-default-job-15] | | `-- Installing xorgproto-2021.5...
[130amd64-default-job-15] | | `-- Extracting xorgproto-2021.5: .......... done
[130amd64-default-job-15] | | `-- Extracting libXdmcp-1.1.3: ......... done
[130amd64-default-job-15] | | `-- Installing libpthread-stubs-0.4...
[130amd64-default-job-15] | | `-- Extracting libpthread-stubs-0.4: .... done
[130amd64-default-job-15] | `-- Extracting libxcb-1.14_1: .......... done
[130amd64-default-job-15] | `-- Installing openjpeg-2.4.0...
[130amd64-default-job-15] | `-- Extracting openjpeg-2.4.0: .......... done
[130amd64-default-job-15] | `-- Installing py38-olefile-0.46...
[130amd64-default-job-15] | `-- Extracting py38-olefile-0.46: .......... done
[130amd64-default-job-15] | `-- Installing py38-tkinter-3.8.12_6...
[130amd64-default-job-15] | | `-- Installing tcl86-8.6.12...
[130amd64-default-job-15] | | `-- Extracting tcl86-8.6.12: .......... done
[130amd64-default-job-15] | | `-- Installing tk86-8.6.12...
[130amd64-default-job-15] | | `-- Installing libX11-1.7.2,1...
[130amd64-default-job-15] | | `-- Extracting libX11-1.7.2,1: .......... done
[130amd64-default-job-15] | | `-- Installing libXScrnSaver-1.2.3_2...
[130amd64-default-job-15] | | | `-- Installing libXext-1.3.4,1...
[130amd64-default-job-15] | | | `-- Extracting libXext-1.3.4,1: .......... done
[130amd64-default-job-15] | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done
[130amd64-default-job-15] | | `-- Installing libXft-2.3.4...
[130amd64-default-job-15] | | | `-- Installing libXrender-0.9.10_2...
[130amd64-default-job-15] | | | `-- Extracting libXrender-0.9.10_2: .......... done
[130amd64-default-job-15] | | `-- Extracting libXft-2.3.4: .......... done
[130amd64-default-job-15] | | `-- Extracting tk86-8.6.12: .......... done
[130amd64-default-job-15] | `-- Extracting py38-tkinter-3.8.12_6: ........ done
[130amd64-default-job-15] | `-- Installing webp-1.2.1...
[130amd64-default-job-15] | | `-- Installing giflib-5.2.1...
[130amd64-default-job-15] | | `-- Extracting giflib-5.2.1: .......... done
[130amd64-default-job-15] | `-- Extracting webp-1.2.1: .......... done
[130amd64-default-job-15] `-- Extracting py38-pillow-8.2.0: .......... done
[130amd64-default-job-15] `-- Installing py38-pluggy-0.13.1...
[130amd64-default-job-15] `-- Extracting py38-pluggy-0.13.1: .......... done
[130amd64-default-job-15] `-- Installing py38-pyparsing-3.0.6...
[130amd64-default-job-15] `-- Extracting py38-pyparsing-3.0.6: .......... done
[130amd64-default-job-15] `-- Installing py38-pytz-2021.3,1...
[130amd64-default-job-15] `-- Extracting py38-pytz-2021.3,1: .......... done
[130amd64-default-job-15] `-- Installing py38-tornado-6.1...
[130amd64-default-job-15] `-- Extracting py38-tornado-6.1: .......... done
[130amd64-default-job-15] `-- Installing qhull-7.3.2_2,1...
[130amd64-default-job-15] `-- Extracting qhull-7.3.2_2,1: .......... done
[130amd64-default-job-15] Extracting py38-matplotlib-3.4.3: .......... done
=====
Message from freetype2-2.11.1:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
===> py38-nilearn-0.8.1 depends on package: py38-matplotlib>0 - found
===> Returning to build of py38-nilearn-0.8.1
===> py38-nilearn-0.8.1 depends on package: py38-nibabel>0 - not found
===> Installing existing package /packages/All/py38-nibabel-3.2.1.pkg
[130amd64-default-job-15] Installing py38-nibabel-3.2.1...
[130amd64-default-job-15] `-- Installing py38-packaging-21.3...
[130amd64-default-job-15] `-- Extracting py38-packaging-21.3: .......... done
[130amd64-default-job-15] Extracting py38-nibabel-3.2.1: .......... done
===> py38-nilearn-0.8.1 depends on package: py38-nibabel>0 - found
===> Returning to build of py38-nilearn-0.8.1
===> py38-nilearn-0.8.1 depends on package: py38-pandas>0 - not found
===> Installing existing package /packages/All/py38-pandas-1.2.5,1.pkg
[130amd64-default-job-15] Installing py38-pandas-1.2.5,1...
[130amd64-default-job-15] `-- Installing py38-bottleneck-1.3.2...
[130amd64-default-job-15] `-- Extracting py38-bottleneck-1.3.2: .......... done
[130amd64-default-job-15] `-- Installing py38-cython-0.29.24...
[130amd64-default-job-15] `-- Extracting py38-cython-0.29.24: .......... done
[130amd64-default-job-15] `-- Installing py38-numexpr-2.8.0...
[130amd64-default-job-15] `-- Extracting py38-numexpr-2.8.0: .......... done
[130amd64-default-job-15] `-- Installing py38-sqlite3-3.8.12_7...
[130amd64-default-job-15] | `-- Installing sqlite3-3.37.1,1...
[130amd64-default-job-15] | | `-- Installing libedit-3.1.20210216,1...
[130amd64-default-job-15] | | `-- Extracting libedit-3.1.20210216,1: .......... done
[130amd64-default-job-15] | `-- Extracting sqlite3-3.37.1,1: .......... done
[130amd64-default-job-15] `-- Extracting py38-sqlite3-3.8.12_7: ........ done
[130amd64-default-job-15] Extracting py38-pandas-1.2.5,1: .......... done
=====
Message from py38-pandas-1.2.5,1:
--
Install math/py-statsmodels to enable parts of pandas.stats.
Install devel/py-xarray to enable the to_xarray() function.
===> py38-nilearn-0.8.1 depends on package: py38-pandas>0 - found
===> Returning to build of py38-nilearn-0.8.1
===> py38-nilearn-0.8.1 depends on package: py38-scikit-learn>0 - not found
===> Installing existing package /packages/All/py38-scikit-learn-1.0.2.pkg
[130amd64-default-job-15] Installing py38-scikit-learn-1.0.2...
[130amd64-default-job-15] `-- Installing py38-scipy-1.7.1...
[130amd64-default-job-15] | `-- Installing blas-3.10.0...
[130amd64-default-job-15] | `-- Extracting blas-3.10.0: ........ done
[130amd64-default-job-15] `-- Extracting py38-scipy-1.7.1: .......... done
[130amd64-default-job-15] Extracting py38-scikit-learn-1.0.2: .......... done
===> py38-nilearn-0.8.1 depends on package: py38-scikit-learn>0 - found
===> Returning to build of py38-nilearn-0.8.1
===> py38-nilearn-0.8.1 depends on package: py38-scipy>0 - found
===> py38-nilearn-0.8.1 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.1.16.pkg
[130amd64-default-job-15] Installing bash-5.1.16...
[130amd64-default-job-15] Extracting bash-5.1.16: .......... done
===> py38-nilearn-0.8.1 depends on executable: bash - found
===> Returning to build of py38-nilearn-0.8.1
===> py38-nilearn-0.8.1 depends on package: py38-setuptools>0 - found
===> py38-nilearn-0.8.1 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for py38-nilearn-0.8.1
===> Generating temporary packing list
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 65, in <module>
module_check_fn(is_nilearn_installing=True)
File "<string>", line 124, in _check_module_dependencies
File "<string>", line 73, in _import_module_with_version_check
File "/usr/local/lib/python3.8/site-packages/sklearn/__init__.py", line 82, in <module>
from .base import clone
File "/usr/local/lib/python3.8/site-packages/sklearn/base.py", line 17, in <module>
from .utils import _IS_32BIT
File "/usr/local/lib/python3.8/site-packages/sklearn/utils/__init__.py", line 28, in <module>
from .fixes import np_version, parse_version
File "/usr/local/lib/python3.8/site-packages/sklearn/utils/fixes.py", line 22, in <module>
import threadpoolctl
ModuleNotFoundError: No module named 'threadpoolctl'. Module "sklearn" could not be found. See http://nilearn.github.io/introduction.html#installation for installation information.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-nilearn