[package - main-arm64-default][databases/py-tiledb] Failed for py38-tiledb-0.8.11 in configure
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Date: Thu, 17 Feb 2022 10:49:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/pa453d1437888_s05f0b24bfb/logs/py38-tiledb-0.8.11.log
Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pa453d1437888_s05f0b24bfb
Log:
=>> Building databases/py-tiledb
build started at Thu Feb 17 10:49:15 UTC 2022
port directory: /usr/ports/databases/py-tiledb
package name: py38-tiledb-0.8.11
building for: FreeBSD main-arm64-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400052 arm64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400050
Jail OSVERSION: 1400052
Job Id: 03
!!! Jail is newer than host. (Jail: 1400052, Host: 1400050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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sunpoet@FreeBSD.org
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--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py38/.cache HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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--PLIST_SUB--
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--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py38-tiledb DOCSDIR=/usr/local/share/doc/py38-tiledb EXAMPLESDIR=/usr/local/share/examples/py38-tiledb WWWDIR=/usr/local/www/py38-tiledb ETCDIR=/usr/local/etc/py38-tiledb
--End SUB_LIST--
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-tiledb-0.8.11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5_1.pkg
[main-arm64-default-job-03] Installing pkg-1.17.5_1...
[main-arm64-default-job-03] Extracting pkg-1.17.5_1: .......... done
===> py38-tiledb-0.8.11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-tiledb-0.8.11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py38-tiledb-0.8.11 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py38-tiledb-0.8.11 for building
=> SHA256 Checksum OK for tiledb-0.8.11.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py38-tiledb-0.8.11 for building
===> Extracting for py38-tiledb-0.8.11
=> SHA256 Checksum OK for tiledb-0.8.11.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-tiledb-0.8.11
===> Applying FreeBSD patches for py38-tiledb-0.8.11 from /usr/ports/databases/py-tiledb/files
===========================================================================
=======================<phase: build-depends >============================
===> py38-tiledb-0.8.11 depends on package: py38-cython>=0.27 - not found
===> Installing existing package /packages/All/py38-cython-0.29.26.pkg
[main-arm64-default-job-03] Installing py38-cython-0.29.26...
[main-arm64-default-job-03] `-- Installing py38-setuptools-57.0.0...
[main-arm64-default-job-03] | `-- Installing python38-3.8.12_1...
[main-arm64-default-job-03] | | `-- Installing gettext-runtime-0.21...
[main-arm64-default-job-03] | | `-- Installing indexinfo-0.3.1...
[main-arm64-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[main-arm64-default-job-03] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-arm64-default-job-03] | | `-- Installing libffi-3.3_1...
[main-arm64-default-job-03] | | `-- Extracting libffi-3.3_1: .......... done
[main-arm64-default-job-03] | | `-- Installing mpdecimal-2.5.1...
[main-arm64-default-job-03] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-arm64-default-job-03] | | `-- Installing readline-8.1.1...
[main-arm64-default-job-03] | | `-- Extracting readline-8.1.1: .......... done
[main-arm64-default-job-03] | `-- Extracting python38-3.8.12_1: .......... done
[main-arm64-default-job-03] `-- Extracting py38-setuptools-57.0.0: .......... done
[main-arm64-default-job-03] Extracting py38-cython-0.29.26: .......... done
=====
Message from python38-3.8.12_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
===> py38-tiledb-0.8.11 depends on package: py38-cython>=0.27 - found
===> Returning to build of py38-tiledb-0.8.11
===> py38-tiledb-0.8.11 depends on package: py38-pybind11>=2.6.2 - not found
===> Installing existing package /packages/All/py38-pybind11-2.9.1.pkg
[main-arm64-default-job-03] Installing py38-pybind11-2.9.1...
[main-arm64-default-job-03] Extracting py38-pybind11-2.9.1: .......... done
===> py38-tiledb-0.8.11 depends on package: py38-pybind11>=2.6.2 - found
===> Returning to build of py38-tiledb-0.8.11
===> py38-tiledb-0.8.11 depends on package: py38-setuptools_scm>=1.5.4 - not found
===> Installing existing package /packages/All/py38-setuptools_scm-6.4.2.pkg
[main-arm64-default-job-03] Installing py38-setuptools_scm-6.4.2...
[main-arm64-default-job-03] `-- Installing py38-packaging-21.3...
[main-arm64-default-job-03] | `-- Installing py38-pyparsing-3.0.7...
[main-arm64-default-job-03] | `-- Extracting py38-pyparsing-3.0.7: .......... done
[main-arm64-default-job-03] `-- Extracting py38-packaging-21.3: .......... done
[main-arm64-default-job-03] `-- Installing py38-tomli-1.2.3...
[main-arm64-default-job-03] `-- Extracting py38-tomli-1.2.3: .......... done
[main-arm64-default-job-03] Extracting py38-setuptools_scm-6.4.2: .......... done
===> py38-tiledb-0.8.11 depends on package: py38-setuptools_scm>=1.5.4 - found
===> Returning to build of py38-tiledb-0.8.11
===> py38-tiledb-0.8.11 depends on package: py38-numpy>=1.16,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.20.3,1.pkg
[main-arm64-default-job-03] Installing py38-numpy-1.20.3,1...
[main-arm64-default-job-03] `-- Installing gcc10-10.3.0...
[main-arm64-default-job-03] | `-- Installing binutils-2.37_2,1...
[main-arm64-default-job-03] | `-- Extracting binutils-2.37_2,1: .......... done
[main-arm64-default-job-03] | `-- Installing gmp-6.2.1...
[main-arm64-default-job-03] | `-- Extracting gmp-6.2.1: .......... done
[main-arm64-default-job-03] | `-- Installing mpc-1.2.1...
[main-arm64-default-job-03] | | `-- Installing mpfr-4.1.0_1...
[main-arm64-default-job-03] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-arm64-default-job-03] | `-- Extracting mpc-1.2.1: ......... done
[main-arm64-default-job-03] `-- Extracting gcc10-10.3.0: .......... done
[main-arm64-default-job-03] `-- Installing openblas-0.3.18,1...
[main-arm64-default-job-03] `-- Extracting openblas-0.3.18,1: .......... done
[main-arm64-default-job-03] `-- Installing suitesparse-umfpack-5.7.9...
[main-arm64-default-job-03] | `-- Installing metis-5.1.0_9...
[main-arm64-default-job-03] | `-- Extracting metis-5.1.0_9: .......... done
[main-arm64-default-job-03] | `-- Installing suitesparse-amd-2.4.6...
[main-arm64-default-job-03] | | `-- Installing suitesparse-config-5.10.1...
[main-arm64-default-job-03] | | `-- Extracting suitesparse-config-5.10.1: ......... done
[main-arm64-default-job-03] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-arm64-default-job-03] | `-- Installing suitesparse-camd-2.4.6...
[main-arm64-default-job-03] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-arm64-default-job-03] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-arm64-default-job-03] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-arm64-default-job-03] | `-- Installing suitesparse-cholmod-3.0.14...
[main-arm64-default-job-03] | | `-- Installing suitesparse-colamd-2.9.6...
[main-arm64-default-job-03] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-arm64-default-job-03] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-arm64-default-job-03] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-arm64-default-job-03] Extracting py38-numpy-1.20.3,1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from metis-5.1.0_9:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py38-tiledb-0.8.11 depends on package: py38-numpy>=1.16,1 - found
===> Returning to build of py38-tiledb-0.8.11
===> py38-tiledb-0.8.11 depends on package: tiledb>=2.2.8 - not found
===> Installing existing package /packages/All/tiledb-2.6.1.pkg
[main-arm64-default-job-03] Installing tiledb-2.6.1...
[main-arm64-default-job-03] `-- Installing capnproto080-0.8.0...
[main-arm64-default-job-03] `-- Extracting capnproto080-0.8.0: .......... done
[main-arm64-default-job-03] `-- Installing catch-2.13.7...
[main-arm64-default-job-03] `-- Extracting catch-2.13.7: .......... done
[main-arm64-default-job-03] `-- Installing clipp-1.2.3...
[main-arm64-default-job-03] `-- Extracting clipp-1.2.3: .... done
[main-arm64-default-job-03] `-- Installing libfmt-8.1.1...
[main-arm64-default-job-03] `-- Extracting libfmt-8.1.1: .......... done
[main-arm64-default-job-03] `-- Installing liblz4-1.9.3,1...
[main-arm64-default-job-03] `-- Extracting liblz4-1.9.3,1: .......... done
[main-arm64-default-job-03] `-- Installing spdlog-1.9.2...
[main-arm64-default-job-03] `-- Extracting spdlog-1.9.2: .......... done
[main-arm64-default-job-03] `-- Installing zstd-1.5.2...
[main-arm64-default-job-03] `-- Extracting zstd-1.5.2: .......... done
[main-arm64-default-job-03] Extracting tiledb-2.6.1: .......... done
===> py38-tiledb-0.8.11 depends on package: tiledb>=2.2.8 - found
===> Returning to build of py38-tiledb-0.8.11
===> py38-tiledb-0.8.11 depends on executable: cython-3.8 - found
===> py38-tiledb-0.8.11 depends on package: py38-setuptools>0 - found
===> py38-tiledb-0.8.11 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py38-tiledb-0.8.11 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-tiledb-0.8.11
WARNING: The wheel package is not available.
/usr/local/bin/python3.8: No module named pip
Traceback (most recent call last):
File "/usr/local/lib/python3.8/site-packages/setuptools/installer.py", line 75, in fetch_build_egg
subprocess.check_call(cmd)
File "/usr/local/lib/python3.8/subprocess.py", line 364, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/local/bin/python3.8', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpif49gv4w', '--quiet', 'cmake>=3.11.0']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 666, in <module>
setup(
File "/usr/local/lib/python3.8/site-packages/setuptools/__init__.py", line 152, in setup
_install_setup_requires(attrs)
File "/usr/local/lib/python3.8/site-packages/setuptools/__init__.py", line 147, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File "/usr/local/lib/python3.8/site-packages/setuptools/dist.py", line 779, in fetch_build_eggs
resolved_dists = pkg_resources.working_set.resolve(
File "/usr/local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 766, in resolve
dist = best[req.key] = env.best_match(
File "/usr/local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1051, in best_match
return self.obtain(req, installer)
File "/usr/local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1063, in obtain
return installer(requirement)
File "/usr/local/lib/python3.8/site-packages/setuptools/dist.py", line 838, in fetch_build_egg
return fetch_build_egg(self, req)
File "/usr/local/lib/python3.8/site-packages/setuptools/installer.py", line 77, in fetch_build_egg
raise DistutilsError(str(e)) from e
distutils.errors.DistutilsError: Command '['/usr/local/bin/python3.8', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpif49gv4w', '--quiet', 'cmake>=3.11.0']' returned non-zero exit status 1.
setup.py sys.argv is: ['setup.py', 'config']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
*** Error code 1
Stop.
make: stopped in /usr/ports/databases/py-tiledb