From nobody Sat Dec 24 22:02:27 2022 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NfdM74bWdz20WZ1 for ; Sat, 24 Dec 2022 22:02:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NfdM71zP2z4Gbk for ; Sat, 24 Dec 2022 22:02:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1671919347; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=/Wa6NmjOJmkU7KuAhqW8R20KLNKXIIAUMFJ1Sy4N4+I=; b=BART61cJHlBuYZmodmZmj6X4ThsPBTIyn533E8B0lizd5BNP3yYtVkIuVc+JwQKBQPWly6 8LjbR9avVqr5yrloIbeIbWFpkqfxP9yEr8C/YCrv9TdthrXRKicyCWkwoJN/qDC6w6VTLc DvFzHsjCgmFCrGty52TYvjR29zoFsEUqciDMK7xjVQnzTqstIfSPfs0NPfosIwwrf9ZYy9 TFgMtWa6wWCFX9H7XzOdYyGP8cQaPppcgSzpQXUjNqqbG9x8XZ4DBjd0KxTFLmHjAbSfhy sgOY5Q3uQnS4/L/G6aclHlfRNMtnwJB1bux+Nid0C31rGRT6yoQIPpbBDzwqQA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1671919347; a=rsa-sha256; cv=none; b=AiyHINPzUgpRIIXWM44ZuzKmKLYajadjQeQVFrFGJYf/zIT0xGkWO5lgzWo0YmcTRWwzL3 TET6b8/zzQ/jCQggopKZ6XjOlRHG3nJ+57QvQCd3436CgosUAVIo+lSJ/VUNhAsxRVQkoT haXB5TwctK3vh+U93tdzRa4DJo2BRkqCvmcrpkk/ALJS5g5ZDBxc4HiU4fHjJPtmLMiQ27 dnu9x+v+SBpyGVYJhrbLgfvAmS10cI6PbfOWMpf159RwuhWf6sZ+QltCkUGYQ8js0szblK B7IX7askbIhpB0VcC6Hz4/4uTrn4ELD/nNSvjlPikNUC2L11lzP6+BzZ2/qtYQ== Received: from foul1.nyi.freebsd.org (foul1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:25]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NfdM712TtzT1s for ; Sat, 24 Dec 2022 22:02:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul1.nyi.freebsd.org (localhost [127.0.0.1]) by foul1.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BOM2RfG070250 for ; Sat, 24 Dec 2022 22:02:27 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul1.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 2BOM2RlP070243; Sat, 24 Dec 2022 22:02:27 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sat, 24 Dec 2022 22:02:27 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202212242202.2BOM2RlP070243@foul1.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 131powerpc-quarterly][biology/iqtree] Failed for iqtree-2.0.6_4 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul1/data/131powerpc-quarterly/90737f8024d9/logs/iqtree-2.0.6_4.log Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=131powerpc-quarterly&build=90737f8024d9 Log: =>> Building biology/iqtree build started at Sat Dec 24 22:01:15 UTC 2022 port directory: /usr/ports/biology/iqtree package name: iqtree-2.0.6_4 building for: FreeBSD 131powerpc-quarterly-job-02 13.1-RELEASE FreeBSD 13.1-RELEASE powerpc maintained by: jrm@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh UNAME_p=powerpc UNAME_m=powerpc OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE UNAME_r=13.1-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131powerpc-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color PWD=/usr/local/poudriere/data/.m/131powerpc-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131powerpc-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131powerpc-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for iqtree-2.0.6_4: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jrm@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/iqtree/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LI B="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/iqtree" EXAMPLESDIR="share/examples/iqtree" DATADIR="share/iqtree" WWWDIR="www/iqtree" ETCDIR="etc/iqtree" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/iqtree DOCSDIR=/usr/local/share/doc/iqtree EXAMPLESDIR=/usr/local/share/examples/iqtree WWWDIR=/usr/local/www/iqtree ETCDIR=/usr/local/etc/iqtree --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=powerpc MACHINE_ARCH=powerpc ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: powerpc-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: powerpc-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-m" "elf32ppc_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: powerpc-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> iqtree-2.0.6_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [131powerpc-quarterly-job-02] Installing pkg-1.18.4... [131powerpc-quarterly-job-02] Extracting pkg-1.18.4: .......... done ===> iqtree-2.0.6_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of iqtree-2.0.6_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user => Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v2.0.6?dummy=/Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz fetch: https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v2.0.6?dummy=/Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz: size unknown fetch: https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v2.0.6?dummy=/Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz: size of remote file is not known Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz 5142 kB 5502 kBps 01s => Fetched file size mismatch (expected 5265191, actual 5265764) => Trying next site => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz 5141 kB 70 MBps 00s ===> Fetching all distfiles required by iqtree-2.0.6_4 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.0.6_4 for building => SHA256 Checksum OK for Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by iqtree-2.0.6_4 for building ===> Extracting for iqtree-2.0.6_4 => SHA256 Checksum OK for Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for iqtree-2.0.6_4 ===> Applying FreeBSD patches for iqtree-2.0.6_4 from /usr/ports/biology/iqtree/files Compiler : Clang Target binary : 32-bit OpenMP : Yes MPI : NONE Vectorization : SSE3/AVX/AVX2 C flags : -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -m32 -O3 -ffunction-sections -fdata-sections CXX flags : -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -m32 -O3 -ffunction-sections -fdata-sections LINKER flags : -fstack-protector-strong -rdynamic -Wl,--gc-sections -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for backtrace -- Looking for backtrace - not found -- Found Backtrace: /usr/lib/libexecinfo.so -- Found ZLIB: /usr/lib/libz.so (found version "1.2.12") Using system zlib -- Performing Test FLAG_WEXTRA -- Performing Test FLAG_WEXTRA - Failed -- clang-tidy not found. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/iqtree/work/.build =========================================================================== =================================================== ===> Building for iqtree-2.0.6_4 [ 0% 2/237] /usr/bin/c++ -DBINARY32 -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6 -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -m32 -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -MF CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o.d -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylokernelsse.cpp FAILED: CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o /usr/bin/c++ -DBINARY32 -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6 -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -m32 -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -MF CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o.d -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylokernelsse.cpp c++: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylokernelsse.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:38: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_common.h:35: /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher #error Please compile for the SSE2 instruction set or higher ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylokernelsse.cpp:9: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:38: /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d' inline Vec2d infinite_vec() { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d' inline Vec2d nan_vec(int n) { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d' inline Vec2d nan_vec(int n) { ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylokernelsse.cpp:9: /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f' static inline Vec4f exponent_f(Vec4f const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'? const vm_ufi upow2_23 = {pow2_23}; ^~~~~~ vm_udi /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here union vm_udi { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui' Vec4ui a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui' Vec4ui b = a >> 23; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui' Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f' Vec4f d = reinterpret_f(c); // bit-cast back to double ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f' Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d' static inline Vec2d exponent_f(Vec2d const & x) { ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq' Vec2uq a = reinterpret_i(x); // bit-cast x to integer ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq' Vec2uq b = a >> 52; // shift down exponent to low bits ^ /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq' Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. [ 0% 2/237] /usr/bin/c++ -DBINARY32 -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6 -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/terraphast/include -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/terraphast/lib/gcc_clang -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -m32 -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o -MF CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o.d -o CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/obsolete/parsmultistate.cpp FAILED: CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o /usr/bin/c++ -DBINARY32 -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6 -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/terraphast/include -I/wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/terraphast/lib/gcc_clang -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -m32 -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -msse3 -MD -MT CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o -MF CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o.d -o CMakeFiles/iqtree2.dir/obsolete/parsmultistate.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/obsolete/parsmultistate.cpp c++: warning: argument unused during compilation: '-msse3' [-Wunused-command-line-argument] In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/obsolete/parsmultistate.cpp:21: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylotree.h:44: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/pll/pll.h:78: In file included from /usr/lib/clang/13.0.0/include/xmmintrin.h:13: /usr/lib/clang/13.0.0/include/mmintrin.h:33:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? __builtin_ia32_emms(); ^ /usr/include/c++/v1/math.h:670:12: note: '__builtin_isless' declared here return isless(__lcpp_x, __lcpp_y); ^ /usr/include/math.h:119:23: note: expanded from macro 'isless' #define isless(x, y) __builtin_isless((x), (y)) ^ In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/obsolete/parsmultistate.cpp:21: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/tree/phylotree.h:44: In file included from /wrkdirs/usr/ports/biology/iqtree/work/IQ-TREE-2.0.6/pll/pll.h:78: In file included from /usr/lib/clang/13.0.0/include/xmmintrin.h:13: /usr/lib/clang/13.0.0/include/mmintrin.h:33:25: error: too few arguments to function call, expected 2, have 0 __builtin_ia32_emms(); ~~~~~~~~~~~~~~~~~~~~^ /usr/lib/clang/13.0.0/include/mmintrin.h:50:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si' return (__m64)__builtin_ia32_vec_init_v2si(__i, 0); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:67:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si' return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:129:19: error: use of undeclared identifier '__builtin_ia32_packsswb' return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:159:19: error: use of undeclared identifier '__builtin_ia32_packssdw' return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:189:19: error: use of undeclared identifier '__builtin_ia32_packuswb' return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw' return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:239:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd' return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:260:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq' return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:287:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw' return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:310:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd' return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:331:19: error: use of undeclared identifier '__builtin_ia32_punpckldq' return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:352:19: error: use of undeclared identifier '__builtin_ia32_paddb' return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:373:19: error: use of undeclared identifier '__builtin_ia32_paddw' return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:394:19: error: use of undeclared identifier '__builtin_ia32_paddd' return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:416:19: error: use of undeclared identifier '__builtin_ia32_paddsb' return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:439:19: error: use of undeclared identifier '__builtin_ia32_paddsw' return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/13.0.0/include/mmintrin.h:461:19: error: use of undeclared identifier '__builtin_ia32_paddusb' return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/iqtree