[package - main-i386-default][biology/kmcp] Failed for kmcp-0.8.2 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Wed, 10 Aug 2022 16:57:15 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://beefy17.nyi.freebsd.org/data/main-i386-default/p240569d0a2e9_se9ae9fa937/logs/kmcp-0.8.2.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=main-i386-default&build=p240569d0a2e9_se9ae9fa937 Log: =>> Building biology/kmcp build started at Wed Aug 10 16:56:53 UTC 2022 port directory: /usr/ports/biology/kmcp package name: kmcp-0.8.2 building for: FreeBSD main-i386-default-job-03 14.0-CURRENT FreeBSD 14.0-CURRENT 1400065 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400063 Jail OSVERSION: 1400065 Job Id: 03 !!! Jail is newer than host. (Jail: 1400065, Host: 1400063) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=i386 UNAME_m=i386 OSVERSION=1400065 UNAME_v=FreeBSD 14.0-CURRENT 1400065 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/kmcp" EXAMPLESDIR="share/examples/kmcp" DATADIR="share/kmcp" WWWDIR="www/kmcp" ETCDIR="etc/kmcp" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/kmcp DOCSDIR=/usr/local/share/doc/kmcp EXAMPLESDIR=/usr/local/share/examples/kmcp WWWDIR=/usr/local/www/kmcp ETCDIR=/usr/local/etc/kmcp --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400065 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.18.4.pkg [main-i386-default-job-03] Installing pkg-1.18.4... [main-i386-default-job-03] Extracting pkg-1.18.4: .......... done ===> kmcp-0.8.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of kmcp-0.8.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user => shenwei356-kmcp-v0.8.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz fetch: https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/shenwei356/kmcp/tar.gz/v0.8.2?dummy=/shenwei356-kmcp-v0.8.2_GH0.tar.gz: size of remote file is not known shenwei356-kmcp-v0.8.2_GH0.tar.gz 16 MB 9627 kBps 01s => clausecker-pospop-677120eb417c_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz fetch: https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz: size unknown fetch: https://codeload.github.com/clausecker/pospop/tar.gz/677120eb417c?dummy=/clausecker-pospop-677120eb417c_GH0.tar.gz: size of remote file is not known clausecker-pospop-677120eb417c_GH0.tar.gz 9038 B 22 MBps 00s => grailbio-base-v0.0.10_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz fetch: https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz: size unknown fetch: https://codeload.github.com/grailbio/base/tar.gz/v0.0.10?dummy=/grailbio-base-v0.0.10_GH0.tar.gz: size of remote file is not known grailbio-base-v0.0.10_GH0.tar.gz 592 kB 4876 kBps 00s => iafan-cwalk-586a8832a711_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz fetch: https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz: size unknown fetch: https://codeload.github.com/iafan/cwalk/tar.gz/586a8832a711?dummy=/iafan-cwalk-586a8832a711_GH0.tar.gz: size of remote file is not known iafan-cwalk-586a8832a711_GH0.tar.gz 5497 B 5269 kBps 00s => klauspost-compress-v1.15.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz fetch: https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/klauspost/compress/tar.gz/v1.15.0?dummy=/klauspost-compress-v1.15.0_GH0.tar.gz: size of remote file is not known klauspost-compress-v1.15.0_GH0.tar.gz 14 MB 20 MBps 01s => shenwei356-bio-v0.7.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/. <snip> crypto/internal/subtle encoding unicode/utf16 vendor/golang.org/x/crypto/internal/subtle github.com/VividCortex/ewma internal/unsafeheader math/bits unicode/utf8 internal/race internal/goarch internal/nettrace vendor/golang.org/x/crypto/cryptobyte/asn1 golang.org/x/sys/internal/unsafeheader github.com/ulikunitz/xz/internal/hash internal/itoa internal/goos container/list crypto/internal/boring/sig internal/cpu unicode sync/atomic internal/goexperiment runtime/internal/atomic github.com/shenwei356/pand internal/abi runtime/internal/math github.com/rivo/uniseg runtime/internal/sys # github.com/shenwei356/pand vendor/github.com/shenwei356/pand/dispatch.go:19:20: undefined: andInplaceFuncs vendor/github.com/shenwei356/pand/dispatch.go:29:20: undefined: andFuncs math internal/bytealg runtime github.com/klauspost/compress github.com/shenwei356/util/math github.com/vbauerster/mpb/v5/internal internal/reflectlite sync internal/singleflight internal/testlog math/rand runtime/cgo errors sort internal/oserror path vendor/golang.org/x/net/dns/dnsmessage io strconv crypto/internal/nistec/fiat syscall container/heap crypto/internal/randutil hash strings bytes hash/crc64 hash/crc32 crypto/rc4 crypto reflect github.com/shenwei356/kmers github.com/twotwotwo/sorts vendor/golang.org/x/text/transform net/http/internal/ascii bufio regexp/syntax github.com/shenwei356/util/stats github.com/twotwotwo/sorts/sortutil internal/syscall/execenv internal/syscall/unix time regexp crypto/internal/nistec context io/fs internal/poll github.com/shenwei356/natsort github.com/acarl005/stripansi os internal/fmtsort encoding/binary internal/godebug fmt github.com/mattn/go-runewidth io/ioutil golang.org/x/sys/cpu path/filepath vendor/golang.org/x/net/route internal/intern encoding/base64 crypto/md5 github.com/klauspost/compress/internal/snapref github.com/klauspost/compress/zstd/internal/xxhash vendor/golang.org/x/crypto/internal/poly1305 vendor/golang.org/x/crypto/curve25519/internal/field crypto/internal/edwards25519/field github.com/zeebo/wyhash github.com/zeebo/xxh3 crypto/cipher net/netip encoding/pem github.com/clausecker/pospop os/exec crypto/internal/edwards25519 crypto/internal/boring vendor/golang.org/x/crypto/chacha20 crypto/des crypto/sha256 crypto/sha512 crypto/hmac crypto/aes crypto/sha1 vendor/golang.org/x/crypto/chacha20poly1305 vendor/golang.org/x/crypto/hkdf net/http/internal encoding/hex vendor/golang.org/x/crypto/curve25519 github.com/shenwei356/util/pathutil log github.com/shenwei356/unik/v5 github.com/will-rowe/nthash github.com/shenwei356/util/bytesize github.com/iafan/cwalk github.com/ulikunitz/xz/internal/xlog vendor/golang.org/x/net/http2/hpack mime github.com/tatsushid/go-prettytable github.com/shenwei356/kmcp/kmcp/cmd/index mime/quotedprintable net/url flag github.com/shenwei356/util/byteutil compress/flate runtime/debug text/template/parse github.com/mitchellh/go-homedir os/user github.com/pkg/errors encoding/csv vendor/golang.org/x/text/unicode/norm gopkg.in/yaml.v2 encoding/json github.com/klauspost/compress/fse github.com/vbauerster/mpb/v5/decor math/big vendor/golang.org/x/text/unicode/bidi github.com/shenwei356/util/stringutil github.com/shenwei356/bio/seq golang.org/x/sys/unix github.com/ulikunitz/xz/lzma net compress/gzip github.com/klauspost/compress/flate github.com/klauspost/compress/huff0 github.com/shenwei356/bio/sketches vendor/golang.org/x/text/secure/bidirule text/template github.com/ulikunitz/xz vendor/golang.org/x/net/idna github.com/mattn/go-isatty github.com/edsrzf/mmap-go github.com/vbauerster/mpb/v5/cwriter github.com/mattn/go-colorable github.com/vbauerster/mpb/v5 github.com/klauspost/pgzip crypto/elliptic crypto/dsa crypto/internal/boring/bbig crypto/rand encoding/asn1 github.com/dustin/go-humanize crypto/ed25519 crypto/rsa github.com/klauspost/compress/zstd crypto/x509/pkix vendor/golang.org/x/crypto/cryptobyte crypto/ecdsa vendor/golang.org/x/net/http/httpproxy log/syslog net/textproto crypto/x509 github.com/spf13/pflag github.com/shenwei356/go-logging vendor/golang.org/x/net/http/httpguts mime/multipart crypto/tls github.com/spf13/cobra net/http/httptrace net/http github.com/shenwei356/xopen github.com/shenwei356/breader github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/taxdump github.com/shenwei356/util/cliutil *** Error code 2 Stop. make: stopped in /usr/ports/biology/kmcp