[package - 130releng-armv7-quarterly][biology/pooler] Failed for pooler-1.76 in build
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Date: Wed, 22 Sep 2021 08:49:09 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ssb22@cam.ac.uk
Log URL: http://beefy12.nyi.freebsd.org/data/130releng-armv7-quarterly/6f789144f1ab/logs/pooler-1.76.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=130releng-armv7-quarterly&build=6f789144f1ab
Log:
=>> Building biology/pooler
build started at Wed Sep 22 08:48:46 UTC 2021
port directory: /usr/ports/biology/pooler
package name: pooler-1.76
building for: FreeBSD 130releng-armv7-quarterly-job-07 13.0-RELEASE-p4 FreeBSD 13.0-RELEASE-p4 1300139 arm
maintained by: ssb22@cam.ac.uk
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400003
Jail OSVERSION: 1300139
Job Id: 07
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> pooler-1.76 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-armv7-quarterly-job-07] Installing pkg-1.16.3...
[130releng-armv7-quarterly-job-07] Extracting pkg-1.16.3: .......... done
===> pooler-1.76 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pooler-1.76
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.76 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.76 for building
=> SHA256 Checksum OK for ssb22-PrimerPooler-v1.76_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by pooler-1.76 for building
===> Extracting for pooler-1.76
=> SHA256 Checksum OK for ssb22-PrimerPooler-v1.76_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pooler-1.76
===========================================================================
=======================<phase: build-depends >============================
===> pooler-1.76 depends on executable: gcc10 - not found
===> Installing existing package /packages/All/gcc10-10.3.0.txz
[130releng-armv7-quarterly-job-07] Installing gcc10-10.3.0...
[130releng-armv7-quarterly-job-07] `-- Installing binutils-2.33.1_5,1...
[130releng-armv7-quarterly-job-07] | `-- Installing gettext-runtime-0.21...
[130releng-armv7-quarterly-job-07] | | `-- Installing indexinfo-0.3.1...
[130releng-armv7-quarterly-job-07] | | `-- Extracting indexinfo-0.3.1: .... done
[130releng-armv7-quarterly-job-07] | `-- Extracting gettext-runtime-0.21: .......... done
[130releng-armv7-quarterly-job-07] `-- Extracting binutils-2.33.1_5,1: .......... done
[130releng-armv7-quarterly-job-07] `-- Installing gmp-6.2.1...
[130releng-armv7-quarterly-job-07] `-- Extracting gmp-6.2.1: .......... done
[130releng-armv7-quarterly-job-07] `-- Installing mpc-1.2.0...
[130releng-armv7-quarterly-job-07] | `-- Installing mpfr-4.1.0...
[130releng-armv7-quarterly-job-07] | `-- Extracting mpfr-4.1.0: .......... done
[130releng-armv7-quarterly-job-07] `-- Extracting mpc-1.2.0: ......... done
[130releng-armv7-quarterly-job-07] Extracting gcc10-10.3.0: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> pooler-1.76 depends on executable: gcc10 - found
===> Returning to build of pooler-1.76
===> pooler-1.76 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for pooler-1.76
===========================================================================
=======================<phase: build >============================
===> Building for pooler-1.76
chmod +w 128.h 2>/dev/null || true
sed -e s/64/128/g < 64.h > 128.h
chmod -w 128.h
chmod +w 32.h 2>/dev/null || true
sed -e s/64/32/g < 64.h > 32.h
chmod -w 32.h
chmod +w 32-64.h 2>/dev/null || true
sed -e s/64/32/g -e s/128/64/g < 64-128.h > 32-64.h
chmod -w 32-64.h
/nxb-bin/usr/bin/cc -O2 -pipe -fopenmp -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -fno-strict-aliasing *.c -o pooler -lm
In file included from bit-common.c:63:
In file included from ./bit-choice.h:23:
In file included from ./triangle.h:44:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
In file included from genome.c:28:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
In file included from pool-split.c:25:
./openmp.h:19:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.76/pooler
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/pooler