[package - main-amd64-default][science/axom] Failed for axom-0.5.0 in build
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Date: Sat, 18 Sep 2021 20:24:31 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p724df9e52627_s007c2463d6/logs/axom-0.5.0.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p724df9e52627_s007c2463d6
Log:
=>> Building science/axom
build started at Sat Sep 18 20:22:13 UTC 2021
port directory: /usr/ports/science/axom
package name: axom-0.5.0
building for: FreeBSD main-amd64-default-job-08 14.0-CURRENT FreeBSD 14.0-CURRENT 1400033 amd64
maintained by: yuri@FreeBSD.org
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!!! This is not supported. !!!
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> axom-0.5.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.1.pkg
[main-amd64-default-job-08] Installing pkg-1.17.1...
[main-amd64-default-job-08] Extracting pkg-1.17.1: .......... done
===> axom-0.5.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of axom-0.5.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by axom-0.5.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by axom-0.5.0 for building
=> SHA256 Checksum OK for LLNL-axom-v0.5.0_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-axom_data-517e53e_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-blt-7ec2cb8_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-uberenv-a121a45_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by axom-0.5.0 for building
===> Extracting for axom-0.5.0
=> SHA256 Checksum OK for LLNL-axom-v0.5.0_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-axom_data-517e53e_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-blt-7ec2cb8_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-uberenv-a121a45_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for axom-0.5.0
===> Applying FreeBSD patches for axom-0.5.0 from /usr/ports/science/axom/files
===========================================================================
=======================<phase: build-depends >============================
===> axom-0.5.0 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.21.0.pkg
<snip>
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Git Support is OFF
-- MPI Support is OFF
-- OpenMP Support is OFF
-- CUDA Support is OFF
-- HIP Support is OFF
-- HCC Support is OFF
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Sphinx support is ON
-- Failed to locate Sphinx executable (missing: SPHINX_EXECUTABLE)
-- Valgrind support is ON
-- Failed to locate Valgrind executable (missing: VALGRIND_EXECUTABLE)
-- AStyle support is OFF
-- ClangFormat support is ON
-- Failed to locate ClangFormat executable (missing: CLANGFORMAT_EXECUTABLE)
-- Uncrustify support is OFF
-- Yapf support is ON
-- Failed to locate Yapf executable (missing: YAPF_EXECUTABLE)
-- CMakeFormat support is ON
-- Failed to locate CMakeFormat executable (missing: CMAKEFORMAT_EXECUTABLE)
-- Cppcheck support is ON
-- Failed to locate Cppcheck executable (missing: CPPCHECK_EXECUTABLE)
-- ClangQuery support is ON
-- Failed to locate ClangQuery executable (missing: CLANGQUERY_EXECUTABLE)
-- ClangTidy support is OFF
-- C Compiler family is Clang
-- Adding optional BLT definitions and compiler flags
-- Setting CMAKE_CXX_EXTENSIONS to Off
-- Standard C++11 selected
-- Enabling all compiler warnings on all targets.
-- Fortran support disabled.
-- CMAKE_C_FLAGS flags are: -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra
-- CMAKE_CXX_FLAGS flags are: -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra
-- CMAKE_EXE_LINKER_FLAGS flags are: -lexecinfo -fstack-protector-strong
-- Google Test Support is ON
-- Google Mock Support is OFF
CMake Deprecation Warning at cmake/blt/thirdparty_builtin/googletest-master-2020-01-07/googletest/CMakeLists.txt:56 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.12")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Umpire support is OFF
-- RAJA support is OFF
-- HDF5 support is OFF
-- Conduit was built with HDF5 Support
-- Looking for HDF5 at: /usr/local
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6")
-- HDF5_DIR_REAL=/usr/local
-- Checking that found HDF5_INCLUDE_DIRS are in HDF5_DIR
-- HDF5_INCLUDE_DIRS=/usr/local/include
-- /usr/local/include includes HDF5_DIR (/usr/local)
-- /usr/local/include includes HDF5_REAL_DIR ()
-- HDF5 is parallel: FALSE
-- Found Conduit: /usr/local (found version 0.7.2)
-- CONDUIT_VERSION = 0.7.2
-- CONDUIT_INSTALL_PREFIX = /usr/local
-- CONDUIT_IMPORT_ROOT = /usr/local
-- CONDUIT_USE_CXX11 = TRUE
-- CONDUIT_USE_FMT = TRUE
-- CONDUIT_INCLUDE_DIRS = /usr/local/include/conduit
-- CONDUIT_FORTRAN_ENABLED = TRUE
-- CONDUIT_PYTHON_ENABLED =
-- CONDUIT_PYTHON_EXECUTABLE =
-- CONDUIT_PYTHON_MODULE_DIR = /usr/local/python-modules/
-- Conduit Relay features:
-- CONDUIT_RELAY_HDF5_ENABLED = TRUE
-- CONDUIT_HDF5_DIR = /usr/local
-- CONDUIT_RELAY_ADIOS_ENABLED = FALSE
-- CONDUIT_ADIOS_DIR =
-- CONDUIT_RELAY_SILO_ENABLED = TRUE
-- CONDUIT_SILO_DIR = /usr/local
-- CONDUIT_RELAY_MPI_ENABLED = TRUE
-- Conduit imported targets: conduit::conduit conduit::conduit_mpi
-- MFEM support is OFF
-- Shroud support is OFF
-- SCR support is OFF
-- LUA support is OFF
-- Building shared libraries (BUILD_SHARED_LIBS == ON)
-- SOL Enabled: FALSE
-- Sparsehash configured with '<functional>' header
-- Axom Component Lumberjack turned off due to ENABLE_MPI=OFF
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Axom component slic is ON
-- Axom component slam is ON
-- Axom component primal is ON
-- Axom component sidre is ON
-- Axom component mint is ON
-- Axom component spin is ON
-- Axom component inlet is ON
-- Axom component quest is ON
-- AXOM_DATA_DIR: /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/data
-- Configuring Axom version v0.5.0
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/science/axom/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for axom-0.5.0
[ 1% 2/64] /usr/bin/c++ -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_DEATH_TEST=0 -Dgtest_main_EXPORTS -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/cmake/blt/thirdparty_builtin/googletest-master-2020-01-07/googletest/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/cmake/blt/thirdparty_builtin/googletest-master-2020-01-07/googletest -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Wall -Wshadow -Wconversion -DGTEST_HAS_PTHREAD=1 -fexceptions -W -Wpointer-arith -Wreturn-type -Wcast-qual -Wwrite-strings -Wswitch -Wunused-parameter -Wcast-align -Wchar-subscripts -Winline -Wredundant-decls -pthread -std=c++11 -MD -MT blt/thirdparty_builtin/googletest-master-2020-01-07/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -MF blt/thirdparty_builtin/googletest-master-2020-01-07/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d -o blt/thirdparty_builtin/googletest-maste
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[ 3% 3/64] /usr/bin/c++ -DGTEST_HAS_DEATH_TEST=0 -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/cmake/blt/thirdparty_builtin/googletest-master-2020-01-07/googletest -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/cmake/blt/thirdparty_builtin/googletest-master-2020-01-07/googletest/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIE -pthread -std=c++11 -MD -MT blt/tests/smoke/CMakeFiles/blt_gtest_smoke.dir/blt_gtest_smoke.cpp.o -MF blt/tests/smoke/CMakeFiles/blt_gtest_smoke.dir/blt_gtest_smoke.cpp.o.d -o blt/tests/smoke/CMakeFiles/blt_gtest_smoke.dir/blt_gtest_smoke.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/cmake/blt/tests/smoke/blt_gtest_smoke.cpp
[ 4% 4/64] /usr/bin/c++ -Daxom_EXPORTS -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++11 -MD -MT axom/CMakeFiles/axom.dir/Axom.cpp.o -MF axom/CMakeFiles/axom.dir/Axom.cpp.o.d -o axom/CMakeFiles/axom.dir/Axom.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/Axom.cpp
[ 6% 5/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/core/CMakeFiles/core.dir/utilities/FileUtilities.cpp.o -MF axom/core/CMakeFiles/core.dir/utilities/FileUtilities.cpp.o.d -o axom/core/CMakeFiles/core.dir/utilities/FileUtilities.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/core/utilities/FileUtilities.cpp
[ 7% 6/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/core/CMakeFiles/core.dir/utilities/StringUtilities.cpp.o -MF axom/core/CMakeFiles/core.dir/utilities/StringUtilities.cpp.o.d -o axom/core/CMakeFiles/core.dir/utilities/StringUtilities.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/core/utilities/StringUtilities.cpp
[ 9% 7/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/core/CMakeFiles/core.dir/utilities/Utilities.cpp.o -MF axom/core/CMakeFiles/core.dir/utilities/Utilities.cpp.o.d -o axom/core/CMakeFiles/core.dir/utilities/Utilities.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/core/utilities/Utilities.cpp
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In file included from /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/inlet/Function.cpp:6:
/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/inlet/Function.hpp:626:8: warning: private field 'm_docEnabled' is not used [-Wunused-private-field]
bool m_docEnabled;
^
1 warning generated.
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[ 89% 58/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/quest/CMakeFiles/quest.dir/stl/STLReader.cpp.o -MF axom/quest/CMakeFiles/quest.dir/stl/STLReader.cpp.o.d -o axom/quest/CMakeFiles/quest.dir/stl/STLReader.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/quest/stl/STLReader.cpp
[ 90% 59/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/quest/CMakeFiles/quest.dir/interface/internal/QuestHelpers.cpp.o -MF axom/quest/CMakeFiles/quest.dir/interface/internal/QuestHelpers.cpp.o.d -o axom/quest/CMakeFiles/quest.dir/interface/internal/QuestHelpers.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/quest/interface/internal/QuestHelpers.cpp
[ 92% 60/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/quest/CMakeFiles/quest.dir/MeshTester.cpp.o -MF axom/quest/CMakeFiles/quest.dir/MeshTester.cpp.o.d -o axom/quest/CMakeFiles/quest.dir/MeshTester.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/quest/MeshTester.cpp
[ 93% 61/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/quest/CMakeFiles/quest.dir/interface/signed_distance.cpp.o -MF axom/quest/CMakeFiles/quest.dir/interface/signed_distance.cpp.o.d -o axom/quest/CMakeFiles/quest.dir/interface/signed_distance.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/quest/interface/signed_distance.cpp
[ 95% 62/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++11 -MD -MT axom/quest/CMakeFiles/quest.dir/interface/inout.cpp.o -MF axom/quest/CMakeFiles/quest.dir/interface/inout.cpp.o.d -o axom/quest/CMakeFiles/quest.dir/interface/inout.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/axom/quest/interface/inout.cpp
[ 96% 63/64] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -lexecinfo -fstack-protector-strong -shared -Wl,-soname,libaxom.so -o lib/libaxom.so axom/slic/CMakeFiles/slic.dir/core/Logger.cpp.o axom/slic/CMakeFiles/slic.dir/core/LogStream.cpp.o axom/slic/CMakeFiles/slic.dir/interface/slic.cpp.o axom/slic/CMakeFiles/slic.dir/internal/stacktrace.cpp.o axom/slic/CMakeFiles/slic.dir/streams/GenericOutputStream.cpp.o axom/slam/CMakeFiles/slam.dir/BitSet.cpp.o axom/slam/CMakeFiles/slam.dir/OrderedSet.cpp.o axom/primal/CMakeFiles/primal.dir/operators/detail/intersect_impl.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Buffer.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Group.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/DataStore.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/View.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Attribute.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/
AttrValues.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Iterator.cpp.o axom/mint/CMakeFiles/mint.dir/fem/FiniteElement.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/internal/MeshHelpers.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/blueprint.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/CurvilinearMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/FieldData.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/Mesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/MeshCoordinates.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/ParticleMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/RectilinearMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/StructuredMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/UniformMesh.cpp.o axom/mint/CMakeFiles/mint.dir/utils/vtk_utils.cpp.o axom/mint/CMakeFiles/mint.dir/utils/su2_utils.cpp.o axom/spin/CMakeFiles/spin.dir/__/Axom.cpp.o axom/inlet/CMakeFiles/inlet.dir/Field.cpp.o axom/inlet/CMakeFiles/inlet.dir/Function.cpp.o axom/inlet/CMakeFiles/inlet.dir/Inlet.cpp.o axom/inlet/CMakeFiles/inlet.dir/Container.cpp.o
axom/inlet/CMakeFiles/inlet.dir/Proxy.cpp.o!
axom/inlet/CMakeFiles/inlet.dir/VariantKey.cpp.o axom/inlet/CMakeFiles/inlet.dir/SphinxWriter.cpp.o axom/inlet/CMakeFiles/inlet.dir/JSONSchemaWriter.cpp.o axom/inlet/CMakeFiles/inlet.dir/ConduitReader.cpp.o axom/inlet/CMakeFiles/inlet.dir/inlet_utils.cpp.o axom/quest/CMakeFiles/quest.dir/AllNearestNeighbors.cpp.o axom/quest/CMakeFiles/quest.dir/MeshTester.cpp.o axom/quest/CMakeFiles/quest.dir/stl/STLReader.cpp.o axom/quest/CMakeFiles/quest.dir/interface/internal/QuestHelpers.cpp.o axom/quest/CMakeFiles/quest.dir/interface/inout.cpp.o axom/quest/CMakeFiles/quest.dir/interface/signed_distance.cpp.o axom/core/CMakeFiles/core.dir/utilities/FileUtilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/StringUtilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/Utilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/About.cpp.o axom/core/CMakeFiles/core.dir/utilities/nvtx/interface.cpp.o axom/core/CMakeFiles/core.dir/utilities/nvtx/Range.cpp.o axom/core/CMakeFiles/core.dir/numerics/polyn
omial_solvers.cpp.o axom/core/CMakeFiles/core.dir/Path.cpp.o axom/core/CMakeFiles/core.dir/Types.cpp.o axom/CMakeFiles/axom.dir/Axom.cpp.o -Wl,-rpath,/usr/local/lib: -lhdf5 -lhdf5 /usr/local/lib/libconduit_relay.so -ldl -lrt -pthread /usr/local/lib/libsiloh5.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/local/lib/libconduit_blueprint.so /usr/local/lib/libconduit.so && :
FAILED: lib/libaxom.so
: && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -lexecinfo -fstack-protector-strong -shared -Wl,-soname,libaxom.so -o lib/libaxom.so axom/slic/CMakeFiles/slic.dir/core/Logger.cpp.o axom/slic/CMakeFiles/slic.dir/core/LogStream.cpp.o axom/slic/CMakeFiles/slic.dir/interface/slic.cpp.o axom/slic/CMakeFiles/slic.dir/internal/stacktrace.cpp.o axom/slic/CMakeFiles/slic.dir/streams/GenericOutputStream.cpp.o axom/slam/CMakeFiles/slam.dir/BitSet.cpp.o axom/slam/CMakeFiles/slam.dir/OrderedSet.cpp.o axom/primal/CMakeFiles/primal.dir/operators/detail/intersect_impl.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Buffer.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Group.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/DataStore.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/View.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/Attribute.cpp.o axom/sidre/CMakeFiles/sidre.dir/core/AttrValues.cp
p.o axom/sidre/CMakeFiles/sidre.dir/core/Iterator.cpp.o axom/mint/CMakeFiles/mint.dir/fem/FiniteElement.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/internal/MeshHelpers.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/blueprint.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/CurvilinearMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/FieldData.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/Mesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/MeshCoordinates.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/ParticleMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/RectilinearMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/StructuredMesh.cpp.o axom/mint/CMakeFiles/mint.dir/mesh/UniformMesh.cpp.o axom/mint/CMakeFiles/mint.dir/utils/vtk_utils.cpp.o axom/mint/CMakeFiles/mint.dir/utils/su2_utils.cpp.o axom/spin/CMakeFiles/spin.dir/__/Axom.cpp.o axom/inlet/CMakeFiles/inlet.dir/Field.cpp.o axom/inlet/CMakeFiles/inlet.dir/Function.cpp.o axom/inlet/CMakeFiles/inlet.dir/Inlet.cpp.o axom/inlet/CMakeFiles/inlet.dir/Container.cpp.o axom/inlet/C
MakeFiles/inlet.dir/Proxy.cpp.o axom/inlet/C!
MakeFiles/inlet.dir/VariantKey.cpp.o axom/inlet/CMakeFiles/inlet.dir/SphinxWriter.cpp.o axom/inlet/CMakeFiles/inlet.dir/JSONSchemaWriter.cpp.o axom/inlet/CMakeFiles/inlet.dir/ConduitReader.cpp.o axom/inlet/CMakeFiles/inlet.dir/inlet_utils.cpp.o axom/quest/CMakeFiles/quest.dir/AllNearestNeighbors.cpp.o axom/quest/CMakeFiles/quest.dir/MeshTester.cpp.o axom/quest/CMakeFiles/quest.dir/stl/STLReader.cpp.o axom/quest/CMakeFiles/quest.dir/interface/internal/QuestHelpers.cpp.o axom/quest/CMakeFiles/quest.dir/interface/inout.cpp.o axom/quest/CMakeFiles/quest.dir/interface/signed_distance.cpp.o axom/core/CMakeFiles/core.dir/utilities/FileUtilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/StringUtilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/Utilities.cpp.o axom/core/CMakeFiles/core.dir/utilities/About.cpp.o axom/core/CMakeFiles/core.dir/utilities/nvtx/interface.cpp.o axom/core/CMakeFiles/core.dir/utilities/nvtx/Range.cpp.o axom/core/CMakeFiles/core.dir/numerics/polynomial_solvers
.cpp.o axom/core/CMakeFiles/core.dir/Path.cpp.o axom/core/CMakeFiles/core.dir/Types.cpp.o axom/CMakeFiles/axom.dir/Axom.cpp.o -Wl,-rpath,/usr/local/lib: -lhdf5 -lhdf5 /usr/local/lib/libconduit_relay.so -ldl -lrt -pthread /usr/local/lib/libsiloh5.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/local/lib/libconduit_blueprint.so /usr/local/lib/libconduit.so && :
ld: error: unable to find library -lhdf5
ld: error: unable to find library -lhdf5
c++: error: linker command failed with exit code 1 (use -v to see invocation)
[ 98% 63/64] /usr/bin/c++ -I/wrkdirs/usr/ports/science/axom/work/.build/include -I/wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src -isystem /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/thirdparty -isystem /usr/local/include -isystem /usr/local/include/conduit -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIE -pthread -std=c++11 -MD -MT tools/CMakeFiles/mesh_tester.dir/mesh_tester.cpp.o -MF tools/CMakeFiles/mesh_tester.dir/mesh_tester.cpp.o.d -o tools/CMakeFiles/mesh_tester.dir/mesh_tester.cpp.o -c /wrkdirs/usr/ports/science/axom/work/axom-0.5.0/src/tools/mesh_tester.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/axom