[package - 122arm64-quarterly][biology/hhsuite] Failed for hhsuite-3.3.0 in build
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Date: Thu, 16 Sep 2021 04:08:24 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/122arm64-quarterly/36b2c5474a0d/logs/hhsuite-3.3.0.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=122arm64-quarterly&build=36b2c5474a0d
Log:
=>> Building biology/hhsuite
build started at Thu Sep 16 04:07:49 UTC 2021
port directory: /usr/ports/biology/hhsuite
package name: hhsuite-3.3.0
building for: FreeBSD 122arm64-quarterly-job-10 12.2-RELEASE FreeBSD 12.2-RELEASE arm64
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> hhsuite-3.3.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[122arm64-quarterly-job-10] Installing pkg-1.16.3...
[122arm64-quarterly-job-10] Extracting pkg-1.16.3: .......... done
===> hhsuite-3.3.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.3.0 for building
===> Extracting for hhsuite-3.3.0
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for hhsuite-3.3.0
===> Applying FreeBSD patches for hhsuite-3.3.0 from /usr/ports/biology/hhsuite/files
===========================================================================
=======================<phase: build-depends >============================
===> hhsuite-3.3.0 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.20.4.txz
[122arm64-quarterly-job-10] Installing cmake-3.20.4...
[122arm64-quarterly-job-10] `-- Installing curl-7.78.0...
[122arm64-quarterly-job-10] | `-- Installing ca_root_nss-3.63...
[122arm64-quarterly-job-10] | `-- Extracting ca_root_nss-3.63: ........ done
[122arm64-quarterly-job-10] | `-- Installing libnghttp2-1.43.0...
[122arm64-quarterly-job-10] | `-- Extracting libnghttp2-1.43.0: .......... done
[122arm64-quarterly-job-10] `-- Extracting curl-7.78.0: .......... done
[122arm64-quarterly-job-10] `-- Installing expat-2.4.1...
[122arm64-quarterly-job-10] `-- Extracting expat-2.4.1: .......... done
[122arm64-quarterly-job-10] `-- Installing jsoncpp-1.9.4...
[122arm64-quarterly-job-10] `-- Extracting jsoncpp-1.9.4: .......... done
[122arm64-quarterly-job-10] `-- Installing libarchive-3.5.1,1...
[122arm64-quarterly-job-10] | `-- Installing liblz4-1.9.3,1...
[122arm64-quarterly-job-10] | `-- Extracting liblz4-1.9.3,1: .......... done
[122arm64-quarterly-job-10] `-- Extracting libarchive-3.5.1,1: .......... done
[122arm64-quarterly-job-10] `-- Installing libuv-1.41.0...
[122arm64-quarterly-job-10] `-- Extracting libuv-1.41.0: .......... done
[122arm64-quarterly-job-10] `-- Installing rhash-1.4.1...
[122arm64-quarterly-job-10] | `-- Installing gettext-runtime-0.21...
<snip>
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> hhsuite-3.3.0 depends on file: /usr/local/bin/cmake - found
===> Returning to build of hhsuite-3.3.0
===> hhsuite-3.3.0 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.10.2,2.txz
[122arm64-quarterly-job-10] Installing ninja-1.10.2,2...
[122arm64-quarterly-job-10] `-- Installing python38-3.8.10...
[122arm64-quarterly-job-10] | `-- Installing libffi-3.3_1...
[122arm64-quarterly-job-10] | `-- Extracting libffi-3.3_1: .......... done
[122arm64-quarterly-job-10] | `-- Installing mpdecimal-2.5.1...
[122arm64-quarterly-job-10] | `-- Extracting mpdecimal-2.5.1: .......... done
[122arm64-quarterly-job-10] | `-- Installing readline-8.1.1...
[122arm64-quarterly-job-10] | `-- Extracting readline-8.1.1: .......... done
[122arm64-quarterly-job-10] `-- Extracting python38-3.8.10: .......... done
[122arm64-quarterly-job-10] Extracting ninja-1.10.2,2: ........ done
=====
Message from python38-3.8.10:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
===> hhsuite-3.3.0 depends on executable: ninja - found
===> Returning to build of hhsuite-3.3.0
===> hhsuite-3.3.0 depends on file: /usr/local/bin/python3.8 - found
===> hhsuite-3.3.0 depends on package: perl5>=5.32.r0<5.33 - not found
===> Installing existing package /packages/All/perl5-5.32.1_1.txz
[122arm64-quarterly-job-10] Installing perl5-5.32.1_1...
[122arm64-quarterly-job-10] Extracting perl5-5.32.1_1: .......... done
===> hhsuite-3.3.0 depends on package: perl5>=5.32.r0<5.33 - found
===> Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: lib-depends >============================
===> hhsuite-3.3.0 depends on shared library: libmpi.so - not found
===> Installing existing package /packages/All/openmpi-4.1.1.txz
[122arm64-quarterly-job-10] Installing openmpi-4.1.1...
[122arm64-quarterly-job-10] `-- Installing gcc10-10.3.0...
[122arm64-quarterly-job-10] | `-- Installing binutils-2.33.1_5,1...
[122arm64-quarterly-job-10] | `-- Extracting binutils-2.33.1_5,1: .......... done
[122arm64-quarterly-job-10] | `-- Installing gmp-6.2.1...
[122arm64-quarterly-job-10] | `-- Extracting gmp-6.2.1: .......... done
[122arm64-quarterly-job-10] | `-- Installing mpc-1.2.0...
[122arm64-quarterly-job-10] | | `-- Installing mpfr-4.1.0...
[122arm64-quarterly-job-10] | | `-- Extracting mpfr-4.1.0: .......... done
[122arm64-quarterly-job-10] | `-- Extracting mpc-1.2.0: ......... done
[122arm64-quarterly-job-10] `-- Extracting gcc10-10.3.0: .......... done
[122arm64-quarterly-job-10] `-- Installing hwloc2-2.4.1...
[122arm64-quarterly-job-10] | `-- Installing libpciaccess-0.16...
[122arm64-quarterly-job-10] | | `-- Installing pciids-20210516...
[122arm64-quarterly-job-10] | | `-- Extracting pciids-20210516: ..... done
[122arm64-quarterly-job-10] | `-- Extracting libpciaccess-0.16: ......... done
[122arm64-quarterly-job-10] | `-- Installing libxml2-2.9.12...
[122arm64-quarterly-job-10] | `-- Extracting libxml2-2.9.12: .......... done
[122arm64-quarterly-job-10] `-- Extracting hwloc2-2.4.1: .......... done
[122arm64-quarterly-job-10] `-- Installing libevent-2.1.12...
[122arm64-quarterly-job-10] `-- Extracting libevent-2.1.12: .......... done
[122arm64-quarterly-job-10] `-- Installing libltdl-2.4.6...
[122arm64-quarterly-job-10] `-- Extracting libltdl-2.4.6: .......... done
[122arm64-quarterly-job-10] `-- Installing munge-0.5.14_1...
[122arm64-quarterly-job-10] `-- Extracting munge-0.5.14_1: ......... done
[122arm64-quarterly-job-10] `-- Installing slurm-wlm-20.02.7...
[122arm64-quarterly-job-10] | `-- Installing hdf-szip-2.1.1...
[122arm64-quarterly-job-10] | `-- Extracting hdf-szip-2.1.1: .......... done
[122arm64-quarterly-job-10] | `-- Installing hdf5-1.10.6,1...
[122arm64-quarterly-job-10] | `-- Extracting hdf5-1.10.6,1: .......... done
[122arm64-quarterly-job-10] | `-- Installing json-c-0.15_1...
[122arm64-quarterly-job-10] | `-- Extracting json-c-0.15_1: .......... done
[122arm64-quarterly-job-10] | `-- Installing libsysinfo-0.0.3_2...
[122arm64-quarterly-job-10] | `-- Extracting libsysinfo-0.0.3_2: ......... done
[122arm64-quarterly-job-10] | `-- Installing lua52-5.2.4...
[122arm64-quarterly-job-10] | | `-- Installing libedit-3.1.20210216,1...
[122arm64-quarterly-job-10] | | `-- Extracting libedit-3.1.20210216,1: .......... done
[122arm64-quarterly-job-10] | `-- Extracting lua52-5.2.4: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[122arm64-quarterly-job-10] `-- Extracting slurm-wlm-20.02.7: .......... done
[122arm64-quarterly-job-10] Extracting openmpi-4.1.1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> hhsuite-3.3.0 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so)
===> Returning to build of hhsuite-3.3.0
===========================================================================
=======================<phase: configure >============================
===> Configuring for hhsuite-3.3.0
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build
-- The C compiler identification is Clang 10.0.1
-- The CXX compiler identification is Clang 10.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiler is clang(++)
-- Looking for fmemopen
-- Looking for fmemopen - found
-- Found MPI_C: /usr/local/mpi/openmpi/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- xxd not found, using xxdi.pl instead
-- Found OpenMP_C: -fopenmp=libomp (found version "4.5")
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
-- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "4.5")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
Python_ADDITIONAL_VERSIONS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/biology/hhsuite/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for hhsuite-3.3.0
[ 1% 2/98] /usr/bin/cc -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_unpack.c
[ 2% 3/98] /usr/bin/cc -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_order.c
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[ 8% 9/98] /usr/bin/cc -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_build.c
[ 9% 10/98] /usr/bin/cc -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -I/usr/local/mpi/openmpi/include -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DHAVE_MPI=1 -fexceptions -pthread -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_apply_mpi.c
/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_apply_mpi.c:172:106: warning: format specifies type 'long long' but the argument has type 'long' [-Wformat]
fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
~~~~ ^~~~~~~~~~~
%ld
1 warning generated.
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/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex_apply_mpi.c:172:106: warning: format specifies type 'long long' but the argument has type 'long' [-Wformat]
fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status));
~~~~ ^~~~~~~~~~~
%ld
1 warning generated.
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cc: warning: -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc10: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,-rpath: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,/usr/local/mpi/openmpi/lib: 'linker' input unused [-Wunused-command-line-argument]
cc: warning: -Wl,--enable-new-dtags: 'linker' input unused [-Wunused-command-line-argument]
[ 13% 14/98] : && /usr/local/bin/cmake -E rm -f lib/ffindex/src/mpq/libmpq.a && /usr/bin/ar qc lib/ffindex/src/mpq/libmpq.a lib/ffindex/src/mpq/CMakeFiles/mpq.dir/mpq.c.o && /usr/bin/ranlib lib/ffindex/src/mpq/libmpq.a && :
[ 14% 15/98] /usr/bin/cc -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ext -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src/ffindex.c
[ 15% 16/98] : && /usr/local/bin/cmake -E rm -f lib/ffindex/src/libffindex.a && /usr/bin/ar qc lib/ffindex/src/libffindex.a lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o && /usr/bin/ranlib lib/ffindex/src/libffindex.a && :
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[ 20% 21/98] : && /usr/bin/cc -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o lib/ffindex/src/ffindex_reduce lib/ffindex/src/libffindex.a && :
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[ 22% 23/98] : && /usr/bin/cc -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o lib/ffindex/src/ffindex_from_fasta_with_split lib/ffindex/src/libffindex.a && :
[ 23% 24/98] : && /usr/bin/cc -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o lib/ffindex/src/ffindex_build lib/ffindex/src/libffindex.a && :
[ 24% 25/98] : && /usr/bin/cc -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath -Wl,/usr/local/mpi/openmpi/lib -Wl,--enable-new-dtags -pthread lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o -o lib/ffindex/src/ffindex_apply_mpi -Wl,-rpath,/usr/local/mpi/openmpi/lib: lib/ffindex/src/libffindex.a lib/ffindex/src/mpq/libmpq.a /usr/local/mpi/openmpi/lib/libmpi.so && :
[ 25% 26/98] : && /usr/bin/cc -std=c99 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o lib/ffindex/src/ffindex_apply lib/ffindex/src/libffindex.a && :
[ 26% 27/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl context_data.lib > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.lib.h
[ 27% 28/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl context_data.crf > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/context_data.crf.h
[ 28% 29/98] /usr/bin/c++ -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -Isrc -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/cs -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++0x -fsigned-char -march=native -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhviterbialgorithm.cpp
FAILED: src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o
/usr/bin/c++ -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simde -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/lib/simd -Isrc -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/cs -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++0x -fsigned-char -march=native -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhviterbialgorithm.cpp
c++: error: the clang compiler does not support '-march=native'
[ 29% 29/98] cd /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/data && mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated && /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/cmake/xxdi.pl cs219.lib > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h > /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h.tmp && mv -f /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h.tmp /wrkdirs/usr/ports/biology/hhsuite/work/.build/generated/cs219.lib.h
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/hhsuite