[package - 130releng-armv6-quarterly][biology/ngs-sdk] Failed for ngs-sdk-2.11.0_2 in build
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Date: Tue, 14 Sep 2021 04:06:39 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy8.nyi.freebsd.org/data/130releng-armv6-quarterly/5744604f85d8/logs/ngs-sdk-2.11.0_2.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=130releng-armv6-quarterly&build=5744604f85d8
Log:
=>> Building biology/ngs-sdk
build started at Tue Sep 14 04:06:16 UTC 2021
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.11.0_2
building for: FreeBSD 130releng-armv6-quarterly-job-12 13.0-RELEASE-p4 FreeBSD 13.0-RELEASE-p4 1300139 arm
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1300121
Jail OSVERSION: 1300139
Job Id: 12
!!! Jail is newer than host. (Jail: 1300139, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
yuri@FreeBSD.org
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--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build"
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--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-armv6-quarterly-job-12] Installing pkg-1.16.3...
[130releng-armv6-quarterly-job-12] Extracting pkg-1.16.3: .......... done
===> ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ngs-sdk-2.11.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===> Extracting for ngs-sdk-2.11.0_2
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ngs-sdk-2.11.0_2
===> Applying FreeBSD patches for ngs-sdk-2.11.0_2 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends >============================
===> ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[130releng-armv6-quarterly-job-12] Installing gmake-4.3_2...
[130releng-armv6-quarterly-job-12] `-- Installing gettext-runtime-0.21...
[130releng-armv6-quarterly-job-12] | `-- Installing indexinfo-0.3.1...
[130releng-armv6-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done
[130releng-armv6-quarterly-job-12] `-- Extracting gettext-runtime-0.21: .......... done
[130releng-armv6-quarterly-job-12] Extracting gmake-4.3_2: .......... done
===> ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - found
===> Returning to build of ngs-sdk-2.11.0_2
===> ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - not found
===> Installing existing package /packages/All/perl5-5.32.1_1.txz
[130releng-armv6-quarterly-job-12] Installing perl5-5.32.1_1...
[130releng-armv6-quarterly-job-12] Extracting perl5-5.32.1_1: .......... done
===> ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - found
===> Returning to build of ngs-sdk-2.11.0_2
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for ngs-sdk-2.11.0_2
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD':'arm'
CONFIGURING ngs-java
Configuring NGS-JAVA package
checking system type... FreeBSD
configure: error: unsupported system 'FreeBSD'
CONFIGURING ngs-python
Configuring NGS-PYTHON package
checking system type... FreeBSD
configure: error: unsupported system 'FreeBSD'
===========================================================================
=======================<phase: build >============================
===> Building for ngs-sdk-2.11.0_2
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
*** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
gmake[1]: *** [Makefile:54: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ngs-sdk