[package - main-armv6-default][biology/p5-BioPerl] Failed for p5-BioPerl-1.007007_1 in stage
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Date: Mon, 13 Sep 2021 05:28:18 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy8.nyi.freebsd.org/data/main-armv6-default/p37fb990074a9_s98168a6e6c/logs/p5-BioPerl-1.007007_1.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=p37fb990074a9_s98168a6e6c
Log:
=>> Building biology/p5-BioPerl
build started at Mon Sep 13 05:22:19 UTC 2021
port directory: /usr/ports/biology/p5-BioPerl
package name: p5-BioPerl-1.007007_1
building for: FreeBSD main-armv6-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400032 arm
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1300121
Jail OSVERSION: 1400032
Job Id: 13
!!! Jail is newer than host. (Jail: 1400032, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for p5-BioPerl-1.007007_1:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
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--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl/work HOME=/wrkdirs/usr/ports/biology/p5-BioPerl/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-BioPerl/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES"
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--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/BioPerl DOCSDIR=/usr/local/share/doc/BioPerl EXAMPLESDIR=/usr/local/share/examples/BioPerl WWWDIR=/usr/local/www/BioPerl ETCDIR=/usr/local/etc/BioPerl
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=======================<phase: check-sanity >============================
===> License ART10 GPLv1+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> p5-BioPerl-1.007007_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.1.pkg
[main-armv6-default-job-13] Installing pkg-1.17.1...
[main-armv6-default-job-13] Extracting pkg-1.17.1: .......... done
===> p5-BioPerl-1.007007_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of p5-BioPerl-1.007007_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License ART10 GPLv1+ accepted by the user
===> Fetching all distfiles required by p5-BioPerl-1.007007_1 for building
<snip>
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tree::Node.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::Quality.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::psl.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Root::Storable.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Root::HTTPget.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::TreeIO::nexus.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPFactory.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::Meta::Array.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::Generic.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::QRNA.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::swiss.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::tigrxml.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Hit::PsiBlastHit.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::SeqWords.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::HSP::ModelHSP.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::SequenceTrace.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::LargePrimarySeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SimpleAnalysisI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Primer.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::WebAgent.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::arp.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructure.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Index::Swissprot.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::GuessSeqFormat.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Location::WidestCoordPolicy.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SeqI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::Scoring.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqAnalysisParserI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::AnnotationAdaptor.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::gbdriver.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Location::Split.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::phd.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::FastHitEventBuilder.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::isPcr.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Index::Qual.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::AnalysisResult.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactory.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Primer::AssessorI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::flatfile.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::OBOterm.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::HSP::PullHSPI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtMatrix.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::silva.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Event::EventHandlerI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tree::AnnotatableNode.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::ParametersI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::msf.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Location::Simple.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::selex.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Generic.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::NC_Feature.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastHSP.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::ExonI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tree::TreeFunctionsI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::LargeLocatableSeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Signalp.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Registry.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Taxon.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::AnalysisI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::pICalculator.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Location::SplitLocationI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::FeaturePair.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::blast_pull.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::largefasta.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::interpro.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Feature.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::Ontology.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Location::FuzzyLocationI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::TreeIO::newick.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::PrositeScan.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::locuslink.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::IO::mlagan.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Processor.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tree::TreeI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchResultEventBuilder.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Sigcleave.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::SequenceStreamI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Gene.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTileUtils.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::IO::scoring.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::largemultifasta.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Align::PairwiseStatistics.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::DocumentRegistry.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::phylip.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Annotation::Reference.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::LocationI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::FTLocationFactory.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern::Backtranslate.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tree::DistanceFactory.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::FeatureTypeI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Annotation::Target.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::EPCR.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeqI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::emboss.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeader.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::meme.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Index::SwissPfam.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::fasta.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultFactory.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::xmfa.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Annotation::Collection.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Root::IO.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::OntologyIO.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameWriter.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::meme.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Lucy.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::RichSeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Align::ProteinStatistics.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Failover.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::UpdateableSeqI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeatureI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::fasta.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Index::AbstractSeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Genewise.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::swiss.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Index::GenBank.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::SequenceFactoryI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::OntologyIO::soflat.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::ResultTableWriter.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::GenericWebAgent.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::bl2seq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::mbsout.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AlignIO::po.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::IndexedBase.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::IUPAC.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::AnnotatableI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Seq::QualI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::ReferenceI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Annotation::TagTree.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::ipcress.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::Psm.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DasI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy::Result.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::TreeIO::TreeEventBuilder.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactoryI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Matrix::Mlagan.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SeqIO::msout.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Align::AlignI.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::CodonUsage::Table.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::LocatableSeq.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::FileCache.3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_local_taxonomydb_query
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_nrdb
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_taxid4species
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_search2tribe
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_taxonomy2tree
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_sreformat
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_mrtrans
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_extract_feature_seq
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seqcut
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_mask_by_search
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_index
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_process_gadfly
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_biogetseq
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_search2alnblocks
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_gccalc
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_process_sgd
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_translate_seq
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seqret
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_find-blast-matches
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_make_mrna_protein
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seq_length
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_split_seq
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_genbank2gff3
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_nexus2nh
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seqconvert
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_revtrans-motif
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seqpart
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_tree2pag
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_search2table
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_search2gff
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_dbsplit
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_mutate
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_fastam9_to_table
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_oligo_count
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_fetch
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_bioflat_index
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_unflatten_seq
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_aacomp
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_filter_search
Installing /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/bin/bp_seqretsplit
cd /wrkdirs/usr/ports/biology/p5-BioPerl/work/BioPerl-1.7.7 && install -m 0644 AUTHORS Changes MANIFEST README.md /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/share/doc/BioPerl
cd /wrkdirs/usr/ports/biology/p5-BioPerl/work/BioPerl-1.7.7/examples/ && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/p5-BioPerl/work/stage/usr/local/share/examples/BioPerl
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/p5-BioPerl