[package - main-amd64-default][math/py-fastcluster] Failed for py38-fastcluster-1.2.3 in build
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Date: Fri, 10 Sep 2021 08:05:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p1409f059d67b_sd06d7eb091/logs/py38-fastcluster-1.2.3.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p1409f059d67b_sd06d7eb091
Log:
=>> Building math/py-fastcluster
build started at Fri Sep 10 08:05:28 UTC 2021
port directory: /usr/ports/math/py-fastcluster
package name: py38-fastcluster-1.2.3
building for: FreeBSD main-amd64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400033 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400033
Job Id: 11
!!! Jail is newer than host. (Jail: 1400033, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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MAKE_ARGS= FLAVOR=py38
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py38-fastcluster-1.2.3:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 HOME=/wrkdirs/usr/ports/math/py-fastcluster/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-fastcluster/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
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--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py38-fastcluster" EXAMPLESDIR="share/examples/py38-fastcluster" DATADIR="share/py38-fastcluster" WWWDIR="www/py38-fastcluster" ETCDIR="etc/py38-fastcluster"
--End PLIST_SUB--
--SUB_LIST--
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--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
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WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
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DISTDIR=/distfiles
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PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
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CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
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#### Misc Poudriere ####
GID=0
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cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
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swap limit (kbytes, -w) unlimited
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pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py38-fastcluster-1.2.3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.1.pkg
[main-amd64-default-job-11] Installing pkg-1.17.1...
[main-amd64-default-job-11] Extracting pkg-1.17.1: .......... done
===> py38-fastcluster-1.2.3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py38-fastcluster-1.2.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.3 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.3 for building
=> SHA256 Checksum OK for fastcluster-1.2.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py38-fastcluster-1.2.3 for building
===> Extracting for py38-fastcluster-1.2.3
=> SHA256 Checksum OK for fastcluster-1.2.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py38-fastcluster-1.2.3
===========================================================================
=======================<phase: build-depends >============================
===> py38-fastcluster-1.2.3 depends on package: py38-numpy>=0,1 - not found
===> Installing existing package /packages/All/py38-numpy-1.16.6_2,1.pkg
[main-amd64-default-job-11] Installing py38-numpy-1.16.6_2,1...
[main-amd64-default-job-11] `-- Installing gcc10-10.3.0...
[main-amd64-default-job-11] | `-- Installing binutils-2.37_1,1...
[main-amd64-default-job-11] | | `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-11] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-11] | | `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-11] | `-- Extracting binutils-2.37_1,1: .......... done
[main-amd64-default-job-11] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-11] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-11] | `-- Installing mpc-1.2.0...
[main-amd64-default-job-11] | | `-- Installing mpfr-4.1.0_1...
[main-amd64-default-job-11] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-amd64-default-job-11] | `-- Extracting mpc-1.2.0: ......... done
[main-amd64-default-job-11] `-- Extracting gcc10-10.3.0: .......... done
[main-amd64-default-job-11] `-- Installing openblas-0.3.16,1...
[main-amd64-default-job-11] `-- Extracting openblas-0.3.16,1: .......... done
[main-amd64-default-job-11] `-- Installing py38-setuptools-57.0.0...
[main-amd64-default-job-11] | `-- Installing python38-3.8.11...
[main-amd64-default-job-11] | | `-- Installing libffi-3.3_1...
[main-amd64-default-job-11] | | `-- Extracting libffi-3.3_1: .......... done
[main-amd64-default-job-11] | | `-- Installing mpdecimal-2.5.1...
[main-amd64-default-job-11] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-amd64-default-job-11] | | `-- Installing readline-8.1.1...
[main-amd64-default-job-11] | | `-- Extracting readline-8.1.1: .......... done
[main-amd64-default-job-11] | `-- Extracting python38-3.8.11: .......... done
[main-amd64-default-job-11] `-- Extracting py38-setuptools-57.0.0: .......... done
[main-amd64-default-job-11] `-- Installing suitesparse-umfpack-5.7.9...
[main-amd64-default-job-11] | `-- Installing metis-5.1.0_8...
[main-amd64-default-job-11] | `-- Extracting metis-5.1.0_8: .......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-amd-2.4.6...
[main-amd64-default-job-11] | | `-- Installing suitesparse-config-5.10.1...
[main-amd64-default-job-11] | | `-- Extracting suitesparse-config-5.10.1: ......... done
[main-amd64-default-job-11] | `-- Extracting suitesparse-amd-2.4.6: .......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-camd-2.4.6...
[main-amd64-default-job-11] | `-- Extracting suitesparse-camd-2.4.6: ......... done
[main-amd64-default-job-11] | `-- Installing suitesparse-ccolamd-2.9.6...
[main-amd64-default-job-11] | `-- Extracting suitesparse-ccolamd-2.9.6: ........ done
[main-amd64-default-job-11] | `-- Installing suitesparse-cholmod-3.0.14...
[main-amd64-default-job-11] | | `-- Installing suitesparse-colamd-2.9.6...
[main-amd64-default-job-11] | | `-- Extracting suitesparse-colamd-2.9.6: ........ done
[main-amd64-default-job-11] | `-- Extracting suitesparse-cholmod-3.0.14: .......... done
[main-amd64-default-job-11] `-- Extracting suitesparse-umfpack-5.7.9: .......... done
[main-amd64-default-job-11] Extracting py38-numpy-1.16.6_2,1: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python38-3.8.11:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
=====
Message from metis-5.1.0_8:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> py38-fastcluster-1.2.3 depends on package: py38-numpy>=0,1 - found
===> Returning to build of py38-fastcluster-1.2.3
===> py38-fastcluster-1.2.3 depends on package: py38-setuptools>0 - found
===> py38-fastcluster-1.2.3 depends on file: /usr/local/bin/python3.8 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py38-fastcluster-1.2.3
Fastcluster version: 1.2.3
Python version: 3.8.11 (default, Sep 9 2021, 01:33:37)
[Clang 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a
running config
===========================================================================
=======================<phase: build >============================
===> Building for py38-fastcluster-1.2.3
Fastcluster version: 1.2.3
Python version: 3.8.11 (default, Sep 9 2021, 01:33:37)
[Clang 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a
running build
running build_py
creating build
creating build/lib.freebsd-14.0-CURRENT-amd64-3.8
copying fastcluster.py -> build/lib.freebsd-14.0-CURRENT-amd64-3.8
running build_ext
building '_fastcluster' extension
creating build/temp.freebsd-14.0-CURRENT-amd64-3.8
creating build/temp.freebsd-14.0-CURRENT-amd64-3.8/src
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o
In file included from src/fastcluster_python.cpp:62:
src/fastcluster.cpp:53:9: warning: Use fenv header. [-W#pragma-messages]
#pragma message("Use fenv header.")
^
Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-amd64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 173.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -c src/fastcluster_python.cpp -o build/temp.freebsd-14.0-CURRENT-amd64-3.8/src/fastcluster_python.o
1. <eof> parser at end of file
2. Per-file LLVM IR generation
3. /usr/include/c++/v1/string:1584:10: Generating code for declaration 'std::basic_string<char>::__init'
#0 0x0000000004728811 (/usr/bin/cc+0x4728811)
#1 0x00000000047269e5 (/usr/bin/cc+0x47269e5)
#2 0x00000000046c059e (/usr/bin/cc+0x46c059e)
#3 0x00000000046c0723 (/usr/bin/cc+0x46c0723)
#4 0x0000000805d05f00 (/lib/libthr.so.3+0x19f00)
cc: error: clang frontend command failed with exit code 134 (use -v to see invocation)
FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f)
Target: x86_64-unknown-freebsd14.0
Thread model: posix
InstalledDir: /usr/bin
cc: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
cc: note: diagnostic msg: /tmp/fastcluster_python-c7e1e9.cpp
cc: note: diagnostic msg: /tmp/fastcluster_python-c7e1e9.sh
cc: note: diagnostic msg:
********************
error: command 'cc' failed with exit status 134
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-fastcluster