[package - 122arm64-quarterly][science/libghemical] Failed for libghemical-3.0.0_17 in configure
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Date: Thu, 02 Sep 2021 01:31:02 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/122arm64-quarterly/3b76cdf297ea/logs/libghemical-3.0.0_17.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=122arm64-quarterly&build=3b76cdf297ea
Log:
=>> Building science/libghemical
build started at Thu Sep 2 01:30:03 UTC 2021
port directory: /usr/ports/science/libghemical
package name: libghemical-3.0.0_17
building for: FreeBSD 122arm64-quarterly-job-08 12.2-RELEASE FreeBSD 12.2-RELEASE arm64
maintained by: yuri@FreeBSD.org
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nclude -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--PLIST_SUB--
LIBGHEMICAL_VERSION="3.0.0" OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> libghemical-3.0.0_17 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[122arm64-quarterly-job-08] Installing pkg-1.16.3...
[122arm64-quarterly-job-08] Extracting pkg-1.16.3: .......... done
===> libghemical-3.0.0_17 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libghemical-3.0.0_17
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libghemical-3.0.0_17 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libghemical-3.0.0_17 for building
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libghemical-3.0.0_17 for building
===> Extracting for libghemical-3.0.0_17
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for libghemical-3.0.0_17
===========================================================================
=======================<phase: build-depends >============================
===> libghemical-3.0.0_17 depends on executable: obabel - not found
===> Installing existing package /packages/All/openbabel-3.1.1_1.txz
[122arm64-quarterly-job-08] Installing openbabel-3.1.1_1...
[122arm64-quarterly-job-08] `-- Installing boost-libs-1.72.0_5...
[122arm64-quarterly-job-08] | `-- Installing icu-69.1,1...
[122arm64-quarterly-job-08] | `-- Extracting icu-69.1,1: .......... done
[122arm64-quarterly-job-08] `-- Extracting boost-libs-1.72.0_5: .......... done
[122arm64-quarterly-job-08] `-- Installing cairo-1.17.4,3...
[122arm64-quarterly-job-08] | `-- Installing fontconfig-2.13.93_1,1...
[122arm64-quarterly-job-08] | | `-- Installing expat-2.4.1...
[122arm64-quarterly-job-08] | | `-- Extracting expat-2.4.1: .......... done
[122arm64-quarterly-job-08] | | `-- Installing freetype2-2.10.4...
[122arm64-quarterly-job-08] | | `-- Installing png-1.6.37_1...
[122arm64-quarterly-job-08] | | `-- Extracting png-1.6.37_1: .......... done
[122arm64-quarterly-job-08] | | `-- Extracting freetype2-2.10.4: .......... done
[122arm64-quarterly-job-08] | `-- Extracting fontconfig-2.13.93_1,1: .......... done
[122arm64-quarterly-job-08] | `-- Installing gettext-runtime-0.21...
[122arm64-quarterly-job-08] | | `-- Installing indexinfo-0.3.1...
[122arm64-quarterly-job-08] | | `-- Extracting indexinfo-0.3.1: .... done
[122arm64-quarterly-job-08] | `-- Extracting gettext-runtime-0.21: .......... done
[122arm64-quarterly-job-08] | `-- Installing glib-2.66.8,2...
[122arm64-quarterly-job-08] | | `-- Installing libffi-3.3_1...
<snip>
If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:
tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"
To use TPM, add your_account to '_tss' group like following:
# pw groupmod _tss -m your_account
=====
Message from libsoup-2.72.0_4:
--
libsoup can use NTLM authentication if it is compiled
with the SMB option. To use it, you must install a
port that provides NTLM, like net/samba412 or net/samba413.
===> libghemical-3.0.0_17 depends on executable: obabel - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on executable: intltool-update - not found
===> Installing existing package /packages/All/intltool-0.51.0_1.txz
[122arm64-quarterly-job-08] Installing intltool-0.51.0_1...
[122arm64-quarterly-job-08] `-- Installing p5-XML-Parser-2.44...
[122arm64-quarterly-job-08] `-- Extracting p5-XML-Parser-2.44: .......... done
[122arm64-quarterly-job-08] Extracting intltool-0.51.0_1: .......... done
===> libghemical-3.0.0_17 depends on executable: intltool-update - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on executable: ld - found
===> libghemical-3.0.0_17 depends on executable: gfortran10 - not found
===> Installing existing package /packages/All/gcc10-10.3.0.txz
[122arm64-quarterly-job-08] Installing gcc10-10.3.0...
[122arm64-quarterly-job-08] `-- Installing binutils-2.33.1_5,1...
[122arm64-quarterly-job-08] `-- Extracting binutils-2.33.1_5,1: .......... done
[122arm64-quarterly-job-08] `-- Installing mpc-1.2.0...
[122arm64-quarterly-job-08] | `-- Installing mpfr-4.1.0...
[122arm64-quarterly-job-08] | `-- Extracting mpfr-4.1.0: .......... done
[122arm64-quarterly-job-08] `-- Extracting mpc-1.2.0: ......... done
[122arm64-quarterly-job-08] Extracting gcc10-10.3.0: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> libghemical-3.0.0_17 depends on executable: gfortran10 - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on executable: msgfmt - not found
===> Installing existing package /packages/All/gettext-tools-0.21.txz
[122arm64-quarterly-job-08] Installing gettext-tools-0.21...
[122arm64-quarterly-job-08] `-- Installing libtextstyle-0.21...
[122arm64-quarterly-job-08] `-- Extracting libtextstyle-0.21: .......... done
[122arm64-quarterly-job-08] Extracting gettext-tools-0.21: .......... done
===> libghemical-3.0.0_17 depends on executable: msgfmt - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[122arm64-quarterly-job-08] Installing gmake-4.3_2...
[122arm64-quarterly-job-08] Extracting gmake-4.3_2: .......... done
===> libghemical-3.0.0_17 depends on package: gmake>=4.3 - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-1.7.4,1.txz
[122arm64-quarterly-job-08] Installing pkgconf-1.7.4,1...
[122arm64-quarterly-job-08] Extracting pkgconf-1.7.4,1: .......... done
===> libghemical-3.0.0_17 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on file: /usr/local/bin/as - found
===> libghemical-3.0.0_17 depends on package: xorgproto>=0 - found
===========================================================================
=======================<phase: lib-depends >============================
===> libghemical-3.0.0_17 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.10.0.txz
[122arm64-quarterly-job-08] Installing blas-3.10.0...
[122arm64-quarterly-job-08] Extracting blas-3.10.0: ........ done
===> libghemical-3.0.0_17 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on shared library: libint.so - not found
===> Installing existing package /packages/All/libint-1.2.1.15.txz
[122arm64-quarterly-job-08] Installing libint-1.2.1.15...
[122arm64-quarterly-job-08] Extracting libint-1.2.1.15: .......... done
===> libghemical-3.0.0_17 depends on shared library: libint.so - found (/usr/local/lib/libint.so)
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on shared library: libf2c.so - not found
===> Installing existing package /packages/All/f2c-20200916.txz
[122arm64-quarterly-job-08] Installing f2c-20200916...
[122arm64-quarterly-job-08] Extracting f2c-20200916: .......... done
===> libghemical-3.0.0_17 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so)
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on shared library: liblapack.so - not found
===> Installing existing package /packages/All/lapack-3.10.0_1.txz
[122arm64-quarterly-job-08] Installing lapack-3.10.0_1...
[122arm64-quarterly-job-08] Extracting lapack-3.10.0_1: .......... done
===> libghemical-3.0.0_17 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on shared library: libmpqc.so - not found
===> Installing existing package /packages/All/mpqc-2.3.1_46.txz
[122arm64-quarterly-job-08] Installing mpqc-2.3.1_46...
[122arm64-quarterly-job-08] `-- Installing graphviz-2.44.1_12...
[122arm64-quarterly-job-08] | `-- Installing libXaw-1.0.14,2...
[122arm64-quarterly-job-08] | | `-- Installing libXmu-1.1.3,1...
[122arm64-quarterly-job-08] | | `-- Extracting libXmu-1.1.3,1: .......... done
[122arm64-quarterly-job-08] | | `-- Installing libXpm-3.5.13...
[122arm64-quarterly-job-08] | | `-- Extracting libXpm-3.5.13: .......... done
[122arm64-quarterly-job-08] | `-- Extracting libXaw-1.0.14,2: .......... done
[122arm64-quarterly-job-08] | `-- Installing libgd-2.3.1,1...
[122arm64-quarterly-job-08] | `-- Extracting libgd-2.3.1,1: .......... done
[122arm64-quarterly-job-08] | `-- Installing libltdl-2.4.6...
[122arm64-quarterly-job-08] | `-- Extracting libltdl-2.4.6: .......... done
[122arm64-quarterly-job-08] `-- Extracting graphviz-2.44.1_12: .......... done
[122arm64-quarterly-job-08] `-- Installing mpich-3.4.2_2...
[122arm64-quarterly-job-08] | `-- Installing bash-5.1.8...
[122arm64-quarterly-job-08] | `-- Extracting bash-5.1.8: .......... done
[122arm64-quarterly-job-08] | `-- Installing hwloc2-2.4.1...
[122arm64-quarterly-job-08] | | `-- Installing libpciaccess-0.16...
[122arm64-quarterly-job-08] | | `-- Installing pciids-20210516...
[122arm64-quarterly-job-08] | | `-- Extracting pciids-20210516: ..... done
[122arm64-quarterly-job-08] | | `-- Extracting libpciaccess-0.16: ......... done
[122arm64-quarterly-job-08] | `-- Extracting hwloc2-2.4.1: .......... done
[122arm64-quarterly-job-08] | `-- Installing json-c-0.15_1...
[122arm64-quarterly-job-08] | `-- Extracting json-c-0.15_1: .......... done
[122arm64-quarterly-job-08] | `-- Installing level-zero-1.4.1...
[122arm64-quarterly-job-08] | `-- Extracting level-zero-1.4.1: .......... done
[122arm64-quarterly-job-08] | `-- Installing libfabric-1.12.1...
[122arm64-quarterly-job-08] | `-- Extracting libfabric-1.12.1: .......... done
[122arm64-quarterly-job-08] | `-- Installing slurm-wlm-20.02.7...
[122arm64-quarterly-job-08] | | `-- Installing hdf-szip-2.1.1...
[122arm64-quarterly-job-08] | | `-- Extracting hdf-szip-2.1.1: .......... done
[122arm64-quarterly-job-08] | | `-- Installing hdf5-1.10.6,1...
[122arm64-quarterly-job-08] | | `-- Extracting hdf5-1.10.6,1: .......... done
[122arm64-quarterly-job-08] | | `-- Installing liblz4-1.9.3,1...
[122arm64-quarterly-job-08] | | `-- Extracting liblz4-1.9.3,1: .......... done
[122arm64-quarterly-job-08] | | `-- Installing libsysinfo-0.0.3_2...
[122arm64-quarterly-job-08] | | `-- Extracting libsysinfo-0.0.3_2: ......... done
[122arm64-quarterly-job-08] | | `-- Installing lua52-5.2.4...
[122arm64-quarterly-job-08] | | `-- Extracting lua52-5.2.4: ......... done
[122arm64-quarterly-job-08] | | `-- Installing munge-0.5.14_1...
[122arm64-quarterly-job-08] | | `-- Extracting munge-0.5.14_1: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[122arm64-quarterly-job-08] | `-- Extracting slurm-wlm-20.02.7: .......... done
[122arm64-quarterly-job-08] `-- Extracting mpich-3.4.2_2: .......... done
[122arm64-quarterly-job-08] `-- Installing tk-wrapper-1.1_3...
[122arm64-quarterly-job-08] | `-- Installing tk86-8.6.11_2...
[122arm64-quarterly-job-08] | | `-- Installing tcl86-8.6.11_1...
[122arm64-quarterly-job-08] | | `-- Extracting tcl86-8.6.11_1: .......... done
[122arm64-quarterly-job-08] | `-- Extracting tk86-8.6.11_2: .......... done
[122arm64-quarterly-job-08] `-- Extracting tk-wrapper-1.1_3: ..... done
[122arm64-quarterly-job-08] Extracting mpqc-2.3.1_46: .......... done
=====
Message from mpich-3.4.2_2:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from tk-wrapper-1.1_3:
--
You may wish to modify (or create) the configuration file:
/usr/local/etc/wish.conf
Sample configuration file is located at:
/usr/local/etc/wish.conf.sample
===> libghemical-3.0.0_17 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so)
===> Returning to build of libghemical-3.0.0_17
===> libghemical-3.0.0_17 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===> libghemical-3.0.0_17 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for libghemical-3.0.0_17
===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/aclocal.m4
===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/configure
ld-elf.so.1: /usr/local/lib/gcc10/libgcc_s.so: invalid file format
===> Script "configure" failed unexpectedly.
Please report the problem to yuri@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/science/libghemical