[package - 130releng-armv7-quarterly][science/avogadrolibs] Failed for avogadrolibs-1.94.0_2 in build/runaway
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Date: Sun, 31 Oct 2021 09:38:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://beefy12.nyi.freebsd.org/data/130releng-armv7-quarterly/f99a1f703656/logs/avogadrolibs-1.94.0_2.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=130releng-armv7-quarterly&build=f99a1f703656
Log:
=>> Building science/avogadrolibs
build started at Sun Oct 31 03:00:34 UTC 2021
port directory: /usr/ports/science/avogadrolibs
package name: avogadrolibs-1.94.0_2
building for: FreeBSD 130releng-armv7-quarterly-job-04 13.0-RELEASE-p4 FreeBSD 13.0-RELEASE-p4 1300139 arm
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> avogadrolibs-1.94.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.2.pkg
[130releng-armv7-quarterly-job-04] Installing pkg-1.17.2...
[130releng-armv7-quarterly-job-04] Extracting pkg-1.17.2: .......... done
===> avogadrolibs-1.94.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of avogadrolibs-1.94.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by avogadrolibs-1.94.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by avogadrolibs-1.94.0_2 for building
<snip>
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/FindLibArchive.cmake:17 (find_package_handle_standard_args)
avogadro/qtplugins/plugindownloader/CMakeLists.txt:3 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found LIBARCHIVE: /usr/local/include
msym include dir /usr/local/lib/cmake/libmsym/../../../include
CMake Warning (dev) at /usr/local/share/cmake/Modules/FindOpenGL.cmake:315 (message):
Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when
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FindOpenGL found both a legacy GL library:
OPENGL_gl_LIBRARY: /usr/local/lib/libGL.so
and GLVND libraries for OpenGL and GLX:
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OPENGL_glx_LIBRARY: /usr/local/lib/libGLX.so
OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for
compatibility with CMake 3.10 and below the legacy GL library will be used.
Call Stack (most recent call first):
avogadro/qtplugins/overlayaxes/CMakeLists.txt:3 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/science/avogadrolibs/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for avogadrolibs-1.94.0_2
[ 0% 1/516] /nxb-bin/usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct/struct_endian.c
[ 0% 2/516] /nxb-bin/usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -MF thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o.d -o thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/libgwavi/gwavi.c
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[ 1% 7/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/crystaltools.cpp
[ 1% 8/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/cube.cpp
[ 1% 9/516] /nxb-bin/usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/utilities/bodr/bodrparse.cxx
[ 1% 10/516] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o bin/bodrparse && :
[ 2% 11/516] /nxb-bin/usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/utilities/encodefile/encodefile.cxx
[ 2% 12/516] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -o bin/encodefile && :
[ 2% 13/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrow_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/arrow_vs.h arrow_vs
[ 2% 14/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/cylinders_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/cylinders_fs.h cylinders_fs
[ 2% 15/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/cylinders_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/cylinders_vs.h cylinders_vs
[ 3% 16/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/linestrip_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/linestrip_fs.h linestrip_fs
[ 3% 17/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/spheres_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/spheres_vs.h spheres_vs
[ 3% 18/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_depth_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs
[ 3% 19/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/mesh_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/mesh_fs.h mesh_fs
[ 3% 20/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/mesh_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/mesh_vs.h mesh_vs
[ 4% 21/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/spheres_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/spheres_fs.h spheres_fs
[ 4% 22/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_depth_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs
[ 4% 23/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_bake_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs
[ 4% 24/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_bake_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs
[ 4% 25/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_render_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs
[ 5% 26/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/sphere_ao_render_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs
[ 5% 27/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/textlabelbase_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs
[ 5% 28/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/textlabelbase_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs
[ 5% 29/516] /nxb-bin/usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/utilities/resdata/resdataparse.cxx
[ 5% 30/516] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o bin/resdataparse && :
[ 6% 31/516] /nxb-bin/usr/bin/cc -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct/struct.c
[ 6% 32/516] : && /usr/local/bin/cmake -E rm -f thirdparty/struct/libstruct.a && /nxb-bin/usr/bin/llvm-ar qc thirdparty/struct/libstruct.a thirdparty/struct/CMakeFiles/struct.dir/struct.c.o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o && /nxb-bin/usr/bin/llvm-ranlib thirdparty/struct/libstruct.a && :
[ 6% 33/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/elements.cpp
[ 6% 34/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/gaussianset.cpp
[ 6% 35/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/gaussiansettools.cpp
[ 6% 36/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/graph.cpp
[ 7% 37/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/mesh.cpp
[ 7% 38/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/molecule.cpp
[ 7% 39/516] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -isystem /usr/local/include/eigen3 -isystem /usr/local/include/spglib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/core/mutex.cpp
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umIO.dir/nwchemlog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/quantumio/nwchemlog.cpp
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[ 12% 62/516] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/linestrip_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/linestrip_vs.h linestrip_vs
[ 12% 63/516] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/quantumio -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering
.dir/arrowgeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrowgeometry.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrowgeometry.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrowgeometry.h:54:8: warning: 'render' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
void render(const Camera& camera);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/drawable.h:94:16: note: overridden virtual function is here
virtual void render(const Camera& camera);
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrowgeometry.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/arrowgeometry.h:59:8: warning: 'clear' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
void clear();
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/drawable.h:124:16: note: overridden virtual function is here
virtual void clear();
^
2 warnings generated.
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ring.dir/glrendervisitor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/glrendervisitor.cpp
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endering.dir/linestripgeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/linestripgeometry.cpp
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[ 17% 91/516] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/quantumio -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o avogadro/rend
ering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/rendering/ambientocclusionspheregeometry.cpp
[ 17% 92/516] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroRendering.so.1 -o lib/libAvogadroRendering.so.1.94.0 avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/g
lrenderer.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstra
tegy.cpp.o avogadro/rendering/CMakeFiles/Avo!
gadroRendering.dir/texture2d.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libGLEW.so /usr/local/lib/libGL.so /usr/local/lib/libGLU.so && :
[ 18% 93/516] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroRendering.so.1.94.0 lib/libAvogadroRendering.so.1 lib/libAvogadroRendering.so && :
[ 18% 94/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro
/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/cjsonformat.cpp
[ 18% 95/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/i
o/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/cmlformat.cpp
[ 18% 96/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF avogadro/i
o/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/dcdformat.cpp
[ 18% 97/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/
io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformat.cpp
[ 18% 98/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF av
ogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformatmanager.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformatmanager.cpp:29:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool read(std::istream& inStream, Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here
virtual bool read(std::istream& in, Core::Molecule& molecule) = 0;
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformatmanager.cpp:29:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool write(std::ostream& outStream, const Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here
virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0;
^
2 warnings generated.
[ 19% 99/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogad
ro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/gromacsformat.cpp
[ 19% 100/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/
io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/mdlformat.cpp
[ 19% 101/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro
/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool read(std::istream& inStream, Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here
virtual bool read(std::istream& in, Core::Molecule& molecule) = 0;
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool write(std::ostream& outStream, const Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here
virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0;
^
2 warnings generated.
[ 19% 102/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/
io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/pdbformat.cpp
[ 19% 103/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF avogadro/
io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/xyzformat.cpp
[ 20% 104/516] /nxb-bin/usr/bin/c++ -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/quantumio -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -MF avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o.d -o avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/command/cjsontocml.cpp
[ 20% 105/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/
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[ 20% 106/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogad
ro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/avogadro/io/lammpsformat.cpp
[ 20% 107/516] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0 -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/core -I/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.94.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro
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[ 20% 108/516] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroIO.so.1 -o lib/libAvogadroIO.so.1.94.0 avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o avogadro/io/CMakeFi
les/AvogadroIO.dir/lammpsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib: lib/libAvogadroCore.so.1.94.0 thirdparty/struct/libstruct.a && :
[ 21% 109/516] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroIO.so.1.94.0 lib/libAvogadroIO.so.1 lib/libAvogadroIO.so && :
=>> Killing runaway build after 21600 seconds with no output