[package - 130arm64-quarterly][science/afni] Failed for afni-21.2.09 in build
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Date: Mon, 08 Nov 2021 22:20:40 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: fernape@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/130arm64-quarterly/6f14af464d3d/logs/afni-21.2.09.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=130arm64-quarterly&build=6f14af464d3d
Log:
=>> Building science/afni
build started at Mon Nov 8 22:13:38 UTC 2021
port directory: /usr/ports/science/afni
package name: afni-21.2.09
building for: FreeBSD 130arm64-quarterly-job-13 13.0-RELEASE-p5 FreeBSD 13.0-RELEASE-p5 arm64
maintained by: fernape@FreeBSD.org
Makefile ident:
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Jail OSVERSION: 1300139
Job Id: 13
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===> The following configuration options are available for afni-21.2.09:
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===> Use 'make config' to modify these settings
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--MAINTAINER--
fernape@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> afni-21.2.09 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.2.pkg
[130arm64-quarterly-job-13] Installing pkg-1.17.2...
[130arm64-quarterly-job-13] Extracting pkg-1.17.2: .......... done
===> afni-21.2.09 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of afni-21.2.09
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-21.2.09 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-21.2.09 for building
=> SHA256 Checksum OK for afni-afni-AFNI_21.2.09_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-21.2.09 for building
===> Extracting for afni-21.2.09
=> SHA256 Checksum OK for afni-afni-AFNI_21.2.09_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for afni-21.2.09
===> Applying FreeBSD patches for afni-21.2.09 from /usr/ports/science/afni/files
===========================================================================
=======================<phase: build-depends >============================
===> afni-21.2.09 depends on executable: gm4 - not found
===> Installing existing package /packages/All/m4-1.4.19,1.pkg
[130arm64-quarterly-job-13] Installing m4-1.4.19,1...
[130arm64-quarterly-job-13] `-- Installing gettext-runtime-0.21...
[130arm64-quarterly-job-13] | `-- Installing indexinfo-0.3.1...
[130arm64-quarterly-job-13] | `-- Extracting indexinfo-0.3.1: .... done
[130arm64-quarterly-job-13] `-- Extracting gettext-runtime-0.21: .......... done
[130arm64-quarterly-job-13] Extracting m4-1.4.19,1: .......... done
===> afni-21.2.09 depends on executable: gm4 - found
===> Returning to build of afni-21.2.09
===> afni-21.2.09 depends on executable: R - not found
===> Installing existing package /packages/All/R-4.1.1_1.pkg
[130arm64-quarterly-job-13] Installing R-4.1.1_1...
[130arm64-quarterly-job-13] `-- Installing cairo-1.17.4,3...
[130arm64-quarterly-job-13] | `-- Installing fontconfig-2.13.94_1,1...
[130arm64-quarterly-job-13] | | `-- Installing expat-2.4.1...
<snip>
zfun.c:200:41: note: passing argument to parameter 'src' here
int zz_uncompress_some( int nsrc, char *src, int ndest, char *dest )
^
zfun.c:410:40: warning: passing 'byte *' (aka 'unsigned char *') to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
nx = (float)zz_compress_all( nbar , xbar , NULL ) ;
^~~~
zfun.c:179:39: note: passing argument to parameter 'src' here
int zz_compress_all( int nsrc , char *src , char **dest )
^
zfun.c:411:40: warning: passing 'byte *' (aka 'unsigned char *') to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
ny = (float)zz_compress_all( nbar , ybar , NULL ) ;
^~~~
zfun.c:179:39: note: passing argument to parameter 'src' here
int zz_compress_all( int nsrc , char *src , char **dest )
^
zfun.c:417:44: warning: passing 'byte *' (aka 'unsigned char *') to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
nxy = (float)zz_compress_all( 2*nbar , qbuf , NULL ) ;
^~~~
zfun.c:179:39: note: passing argument to parameter 'src' here
int zz_compress_all( int nsrc , char *src , char **dest )
^
zfun.c:421:44: warning: passing 'byte *' (aka 'unsigned char *') to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
nxy2 = (float)zz_compress_all( 2*nbar , qbuf , NULL ) ;
^~~~
zfun.c:179:39: note: passing argument to parameter 'src' here
int zz_compress_all( int nsrc , char *src , char **dest )
^
zfun.c:426:44: warning: passing 'byte *' (aka 'unsigned char *') to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
nxy2 = (float)zz_compress_all( 2*nbar , qbuf , NULL ) ;
^~~~
zfun.c:179:39: note: passing argument to parameter 'src' here
int zz_compress_all( int nsrc , char *src , char **dest )
^
11 warnings generated.
/bin/rm -f cs_pv.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -c cs_pv.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f cs_sort_iv.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -c cs_sort_iv.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f cs_sort_d.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -c cs_sort_d.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f cs_fgets.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c cs_fgets.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -c svdlib.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
svdlib.c:922:31: warning: if statement has empty body [-Wempty-body]
if (!fgets(line, 128, file));
^
svdlib.c:922:31: note: put the semicolon on a separate line to silence this warning
svdlib.c:924:31: warning: if statement has empty body [-Wempty-body]
if (!fgets(line, 128, file));
^
svdlib.c:924:31: note: put the semicolon on a separate line to silence this warning
svdlib.c:937:31: warning: if statement has empty body [-Wempty-body]
if (!fgets(line, 128, file));
^
svdlib.c:937:31: note: put the semicolon on a separate line to silence this warning
3 warnings generated.
/bin/rm -f cs_gamfit.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c cs_gamfit.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f cs_sort_str.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -c cs_sort_str.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f cs_playsound.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c cs_playsound.c -I./Audio -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
( cd eispack/ ; gmake all 'CC=cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3' 'CCSVD=cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O0' ; /bin/mv -f *.o .. ; )
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_21.2.09/src/eispack'
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_bakvec.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_balanc.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_balbak.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_bandr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_bandv.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_bisect.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_bqr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cbabk2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cbal.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cdiv.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cg.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_ch.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cinvit.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_combak.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_comhes.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_comlr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_comlr2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_comqr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_comqr2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_cortb.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_corth.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_csroot.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_elmbak.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_elmhes.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_eltran.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_epslon.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_figi.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_figi2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_hqr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_hqr2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_htrib3.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_htribk.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_htrid3.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_htridi.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_imtql1.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_imtql2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_imtqlv.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_invit.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_minfit.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_ortbak.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_orthes.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_ortran.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_pythag.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_qzhes.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_qzit.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_qzval.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_qzvec.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_ratqr.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rebak.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rebakb.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_reduc.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_reduc2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rg.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rgg.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rs.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsb.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsg.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsgab.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsgba.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsm.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rsp.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rst.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_rt.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O0 -I../f2c -DFUNCNAME=svd_slow_ -c eis_svd.c
mv -f eis_svd.o eis_svd_slow.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_svd.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tinvit.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tql1.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tql2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tqlrat.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_trbak1.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_trbak3.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tred1.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tred2.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tred3.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tridib.c
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -O3 -I../f2c -c eis_tsturm.c
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_21.2.09/src/eispack'
/bin/rm -f suma_afni_surface.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c suma_afni_surface.c -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
/bin/rm -f suma_datasets.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c suma_datasets.c -o suma_datasets.o -ISUMA/ -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
suma_datasets.c:10454:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
suma_datasets.c:10454:18: note: place parentheses around the assignment to silence this warning
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
^
( )
suma_datasets.c:10454:18: note: use '==' to turn this assignment into an equality comparison
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
^
==
suma_datasets.c:14741:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14748:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14755:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
^ ~~
suma_datasets.c:14776:32: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14791:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14809:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
^ ~~
suma_datasets.c:14876:17: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if ((tt=SDSET_VECLEN(dset)/(msz[0]*msz[1])) != (int)tt) {
^ ~~
8 warnings generated.
/bin/rm -f suma_utils.o
cc -O2 -pipe -fcommon -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -c suma_utils.c -o suma_utils.o -ISUMA/ -I. -I/usr/local/include -Icoxplot -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -Ileej3 -DHAVE_ZLIB -DHAVE_GIFTI -If2c
suma_utils.c:2268:37: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]
if ((errno == ERANGE &&(*valp == LONG_MAX || *valp == LONG_MIN))
~~ ^~~~~~~~
/usr/include/sys/limits.h:64:18: note: expanded from macro 'LONG_MAX'
#define LONG_MAX __LONG_MAX /* max for a long */
^~~~~~~~~~
/usr/include/machine/_limits.h:58:20: note: expanded from macro '__LONG_MAX'
#define __LONG_MAX 0x7fffffffffffffffL /* max for a long */
^~~~~~~~~~~~~~~~~~~
suma_utils.c:3048:10: error: statement requires expression of scalar type ('va_list' (aka '__builtin_va_list') invalid)
if (vararg_ptr) {
^ ~~~~~~~~~~
1 warning and 1 error generated.
gmake[1]: *** [Makefile.INCLUDE:2102: suma_utils.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_21.2.09/src'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/afni