[package - 130powerpc64-quarterly][biology/ncbi-blast+] Failed for ncbi-blast+-2.11.0_1 in build
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Date: Tue, 29 Jun 2021 10:17:55 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: http://foul1.nyi.freebsd.org/data/130powerpc64-quarterly/ae162bd98935/logs/ncbi-blast+-2.11.0_1.log
Build URL: http://foul1.nyi.freebsd.org/build.html?mastername=130powerpc64-quarterly&build=ae162bd98935
Log:
=>> Building biology/ncbi-blast+
build started at Tue Jun 29 10:12:37 UTC 2021
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.11.0_1
building for: FreeBSD 130powerpc64-quarterly-job-12 13.0-RELEASE FreeBSD 13.0-RELEASE powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:
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jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-blast+-2.11.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130powerpc64-quarterly-job-12] Installing pkg-1.16.3...
[130powerpc64-quarterly-job-12] Extracting pkg-1.16.3: .......... done
===> ncbi-blast+-2.11.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.11.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.11.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.11.0_1 for building
=> SHA256 Checksum OK for ncbi-blast-2.11.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.11.0_1 for building
===> Extracting for ncbi-blast+-2.11.0_1
=> SHA256 Checksum OK for ncbi-blast-2.11.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-blast+-2.11.0_1
===> Applying FreeBSD patches for ncbi-blast+-2.11.0_1 from /usr/ports/biology/ncbi-blast+/files
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-blast+-2.11.0_1 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[130powerpc64-quarterly-job-12] Installing gmake-4.3_2...
[130powerpc64-quarterly-job-12] `-- Installing gettext-runtime-0.21...
[130powerpc64-quarterly-job-12] | `-- Installing indexinfo-0.3.1...
[130powerpc64-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done
[130powerpc64-quarterly-job-12] `-- Extracting gettext-runtime-0.21: .......... done
[130powerpc64-quarterly-job-12] Extracting gmake-4.3_2: .......... done
===> ncbi-blast+-2.11.0_1 depends on package: gmake>=4.3 - found
===> Returning to build of ncbi-blast+-2.11.0_1
===> ncbi-blast+-2.11.0_1 depends on file: /usr/local/bin/python3.7 - not found
===> Installing existing package /packages/All/python37-3.7.10.txz
[130powerpc64-quarterly-job-12] Installing python37-3.7.10...
[130powerpc64-quarterly-job-12] `-- Installing libffi-3.3_1...
[130powerpc64-quarterly-job-12] `-- Extracting libffi-3.3_1: .......... done
[130powerpc64-quarterly-job-12] `-- Installing readline-8.1.0...
[130powerpc64-quarterly-job-12] `-- Extracting readline-8.1.0: .......... done
[130powerpc64-quarterly-job-12] Extracting python37-3.7.10: .......... done
<snip>
elif test -s ""; then \
cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build && gmake -w -j2 --jobserver-auth=5,7 all_p; \
else \
cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build && gmake -w -j2 --jobserver-auth=5,7 all_r; \
fi
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build'
gmake[2]: warning: -j2 forced in submake: resetting jobserver mode.
Build session ID: 18b52d6a-d8c3-11eb-9fed-2c094d000664
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in`
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT ctools/Makefile
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT sra/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/sra/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/ctools/Makefile
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT gui/Makefile
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT sample/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/gui/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/sample/Makefile
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT internal/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/internal/Makefile
/usr/local/bin/gmake -C corelib -w -j2 --jobserver-auth=9,10 all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build'
gmake[3]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT test/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib/test/Makefile
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
/usr/local/bin/gmake[5] (Makefile.precompile): Nothing to be done for `all'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=corelib -w -j2 --jobserver-auth=13,14 export-headers
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=test_mt -w -j2 --jobserver-auth=13,14 export-headers
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=corelib -w -j2 --jobserver-auth=13,14 all
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp:1554:36: error: invalid output constraint '=a' in asm
asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c" (r[2]), "=d" (r[3]) : "a" (func_id));
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp:1529:64: note: called by 'IS'
static CCpuFeatures::InstructionSet* instruction_set = new CCpuFeatures::InstructionSet();
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:311:45: note: called by 'Vendor'
static EVendor Vendor (void) { return IS().m_Vendor; }
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp:1561:36: error: invalid output constraint '=a' in asm
asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c" (r[2]), "=d" (r[3]) : "a" (func_id), "c" (sub_id));
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp:1554:36: error: invalid output constraint '=a' in asm
asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c" (r[2]), "=d" (r[3]) : "a" (func_id));
^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp:1561:36: error: invalid output constraint '=a' in asm
asm volatile("cpuid" : "=a" (r[0]), "=b" (r[1]), "=c" (r[2]), "=d" (r[3]) : "a" (func_id), "c" (sub_id));
^
4 errors generated.
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/Makefile.rules:88: ncbi_system.o] Error 1
gmake[5]: *** Waiting for unfinished jobs....
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_fast.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/request_status.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_message.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/guard.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbierror.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_toolkit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/perf_log.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_autoinit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/interprocess_lock.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_strings.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/expr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/request_control.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/version.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/syslog.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/stream_utils.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/rwstreambuf.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/obj_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbithr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistre.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbireg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiobj.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimtx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimempool.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbifile.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexpt.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexec.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbienv.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidll.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag_p.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidbg.cpp.
Updating dependency information for ncbicfg.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiatomic.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_signal.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_safe_static.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_process.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_param.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_config.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/metareg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/env_reg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ddumpable.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/blob_storage.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/metareg.cpp -o metareg.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=18b52d6a-d8c3-11eb-9fed-2c094d000664 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
FAILED: src/corelib/Makefile.corelib.lib
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/lib/libxncbi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/status/.xncbi.dep \
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/lib/libxncbi-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/status/.xncbi-static.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.meta_l:323: all.nonusr] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.meta_l:281: all_l.real] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build/corelib'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+