[package - main-riscv64-default][biology/cd-hit] Failed for cd-hit-4.8.1_2 in build
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Date: Sun, 13 Jun 2021 10:25:21 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: http://beefy7.nyi.freebsd.org/data/main-riscv64-default/p69c9420a212a_s5860696e6/logs/cd-hit-4.8.1_2.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=main-riscv64-default&build=p69c9420a212a_s5860696e6
Log:
=>> Building biology/cd-hit
build started at Sun Jun 13 10:25:12 UTC 2021
port directory: /usr/ports/biology/cd-hit
package name: cd-hit-4.8.1_2
building for: FreeBSD main-riscv64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400022 riscv
maintained by: jwb@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1400022
Job Id: 13
!!! Jail is newer than host. (Jail: 1400022, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
jwb@FreeBSD.org
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--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cd-hit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cd-hit/work HOME=/wrkdirs/usr/ports/biology/cd-hit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cd-hit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cd-hit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cd-hit/work HOME=/wrkdirs/usr/ports/biology/cd-hit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cd-hit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cd-hit" EXAMPLESDIR="share/examples/cd-hit" DATADIR="share/cd-hit" WWWDIR="www/cd-hit" ETCDIR="etc/cd-hit"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cd-hit DOCSDIR=/usr/local/share/doc/cd-hit EXAMPLESDIR=/usr/local/share/examples/cd-hit WWWDIR=/usr/local/www/cd-hit ETCDIR=/usr/local/etc/cd-hit
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[main-riscv64-default-job-13] Installing pkg-1.16.3...
[main-riscv64-default-job-13] Extracting pkg-1.16.3: .......... done
===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cd-hit-4.8.1_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cd-hit-4.8.1_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cd-hit-4.8.1_2 for building
=> SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cd-hit-4.8.1_2 for building
===> Extracting for cd-hit-4.8.1_2
=> SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cd-hit-4.8.1_2
===> Applying FreeBSD patches for cd-hit-4.8.1_2 from /usr/ports/biology/cd-hit/files
===========================================================================
=======================<phase: build-depends >============================
===> cd-hit-4.8.1_2 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[main-riscv64-default-job-13] Installing gmake-4.3_2...
[main-riscv64-default-job-13] `-- Installing gettext-runtime-0.21...
[main-riscv64-default-job-13] | `-- Installing indexinfo-0.3.1...
[main-riscv64-default-job-13] | `-- Extracting indexinfo-0.3.1: .... done
[main-riscv64-default-job-13] `-- Extracting gettext-runtime-0.21: .......... done
[main-riscv64-default-job-13] Extracting gmake-4.3_2: .......... done
===> cd-hit-4.8.1_2 depends on package: gmake>=4.3 - found
===> Returning to build of cd-hit-4.8.1_2
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for cd-hit-4.8.1_2
===========================================================================
=======================<phase: build >============================
===> Building for cd-hit-4.8.1_2
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/cd-hit/work/cdhit-4.8.1'
gmake[1]: Nothing to be done for 'Makefile'.
/nxb-bin/usr/bin/c++ -fopenmp -DWITH_ZLIB -O2 -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing cdhit-common.c++ -c
cdhit-common.c++:36:9: fatal error: 'omp.h' file not found
#include<omp.h>
^~~~~~~
1 error generated.
gmake[1]: *** [Makefile:79: cdhit-common.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/cd-hit/work/cdhit-4.8.1'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/cd-hit