[package - 130arm64-quarterly][biology/bowtie2] Failed for bowtie2-2.4.2_3 in build
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Date: Tue, 01 Jun 2021 21:38:47 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/130arm64-quarterly/50477f68e31b/logs/bowtie2-2.4.2_3.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=130arm64-quarterly&build=50477f68e31b
Log:
=>> Building biology/bowtie2
build started at Tue Jun 1 21:37:48 UTC 2021
port directory: /usr/ports/biology/bowtie2
package name: bowtie2-2.4.2_3
building for: FreeBSD 130arm64-quarterly-job-07 13.0-RELEASE-p1 FreeBSD 13.0-RELEASE-p1 arm64
maintained by: jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> bowtie2-2.4.2_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130arm64-quarterly-job-07] Installing pkg-1.16.3...
[130arm64-quarterly-job-07] Extracting pkg-1.16.3: .......... done
===> bowtie2-2.4.2_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bowtie2-2.4.2_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3+ accepted by the user
===> Fetching all distfiles required by bowtie2-2.4.2_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3+ accepted by the user
===> Fetching all distfiles required by bowtie2-2.4.2_3 for building
=> SHA256 Checksum OK for BenLangmead-bowtie2-v2.4.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3+ accepted by the user
===> Fetching all distfiles required by bowtie2-2.4.2_3 for building
===> Extracting for bowtie2-2.4.2_3
=> SHA256 Checksum OK for BenLangmead-bowtie2-v2.4.2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for bowtie2-2.4.2_3
===> Applying FreeBSD patches for bowtie2-2.4.2_3 from /usr/ports/biology/bowtie2/files
===========================================================================
=======================<phase: build-depends >============================
===> bowtie2-2.4.2_3 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[130arm64-quarterly-job-07] Installing gmake-4.3_2...
[130arm64-quarterly-job-07] `-- Installing gettext-runtime-0.21...
[130arm64-quarterly-job-07] | `-- Installing indexinfo-0.3.1...
[130arm64-quarterly-job-07] | `-- Extracting indexinfo-0.3.1: .... done
[130arm64-quarterly-job-07] `-- Extracting gettext-runtime-0.21: .......... done
[130arm64-quarterly-job-07] Extracting gmake-4.3_2: .......... done
===> bowtie2-2.4.2_3 depends on package: gmake>=4.3 - found
===> Returning to build of bowtie2-2.4.2_3
===> bowtie2-2.4.2_3 depends on file: /usr/local/bin/python3.7 - not found
===> Installing existing package /packages/All/python37-3.7.10.txz
[130arm64-quarterly-job-07] Installing python37-3.7.10...
[130arm64-quarterly-job-07] `-- Installing libffi-3.3_1...
[130arm64-quarterly-job-07] `-- Extracting libffi-3.3_1: .......... done
<snip>
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:133:15: note: use constraint modifier "w"
"push{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:136:14: note: use constraint modifier "w"
"pop{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm
__cpuid (__ext, __eax, __ebx, __ecx, __edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm
__cpuid (__level, *__eax, *__ebx, *__ecx, *__edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
./processor_support.h:50:9: note: called by 'POPCNTenabled'
__get_cpuid(0x1, ®s.EAX, ®s.EBX, ®s.ECX, ®s.EDX);
^
18 warnings and 4 errors generated.
In file included from bt2_util.cpp:26:
In file included from ./bt2_idx.h:59:
In file included from ./processor_support.h:17:
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:130:14: note: use constraint modifier "w"
"pop{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:15: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w0
third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:19: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w1
third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:22: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w1
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:26: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:132:19: note: use constraint modifier "w"
"xor{l}\t{%2, %0|%0, %2}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:132:22: note: use constraint modifier "w"
"xor{l}\t{%2, %0|%0, %2}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:133:15: note: use constraint modifier "w"
"push{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:136:14: note: use constraint modifier "w"
"pop{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm
__cpuid (__ext, __eax, __ebx, __ecx, __edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm
__cpuid (__level, *__eax, *__ebx, *__ecx, *__edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:182:7: note: called by '__get_cpuid'
if (__get_cpuid_max (__ext, 0) < __level)
^
third_party/cpuid.h:130:14: note: use constraint modifier "w"
"pop{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:15: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w0
third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:19: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w1
third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:22: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w1
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:131:26: note: use constraint modifier "w"
"mov{l}\t{%0, %1|%1, %0}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:132:19: note: use constraint modifier "w"
"xor{l}\t{%2, %0|%0, %2}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:132:22: note: use constraint modifier "w"
"xor{l}\t{%2, %0|%0, %2}\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:133:15: note: use constraint modifier "w"
"push{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]
: "=&r" (__eax), "=&r" (__ebx)
^
third_party/cpuid.h:136:14: note: use constraint modifier "w"
"pop{l}\t%0\n\t"
^~
%w0
third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm
__cpuid (__ext, __eax, __ebx, __ecx, __edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm
__cpuid (__level, *__eax, *__ebx, *__ecx, *__edx);
^
third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'
: "=a" (a), "=b" (b), "=c" (c), "=d" (d) \
^
./processor_support.h:50:9: note: called by 'POPCNTenabled'
__get_cpuid(0x1, ®s.EAX, ®s.EBX, ®s.ECX, ®s.EDX);
^
18 warnings and 4 errors generated.
gmake[1]: *** [Makefile:346: bowtie2-build-s] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: *** [Makefile:354: bowtie2-build-l] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/bowtie2/work/bowtie2-2.4.2'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/bowtie2