From nobody Tue Jul 27 06:18:03 2021 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 6531412D081C for ; Tue, 27 Jul 2021 06:18:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4GYmn7260Tz3MTw for ; Tue, 27 Jul 2021 06:18:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul1.nyi.freebsd.org (foul1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:25]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 2F4AF25981 for ; Tue, 27 Jul 2021 06:18:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul1.nyi.freebsd.org (localhost [127.0.0.1]) by foul1.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 16R6I3wv088138 for ; Tue, 27 Jul 2021 06:18:03 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul1.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 16R6I3j2088120; Tue, 27 Jul 2021 06:18:03 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 27 Jul 2021 06:18:03 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202107270618.16R6I3j2088120@foul1.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 130powerpc64-quarterly][biology/vcflib] Failed for vcflib-1.0.0.r1.130_1 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: http://foul1.nyi.freebsd.org/data/130powerpc64-quarterly/861e2a11357f/logs/vcflib-1.0.0.r1.130_1.log Build URL: http://foul1.nyi.freebsd.org/build.html?mastername=130powerpc64-quarterly&build=861e2a11357f Log: =>> Building biology/vcflib build started at Tue Jul 27 06:17:20 UTC 2021 port directory: /usr/ports/biology/vcflib package name: vcflib-1.0.0.r1.130_1 building for: FreeBSD 130powerpc64-quarterly-job-05 13.0-RELEASE FreeBSD 13.0-RELEASE powerpc maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-16-g00a37fcb Host OSVERSION: 1400008 Jail OSVERSION: 1300139 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE UNAME_r=13.0-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-16-g00a37fcb MASTERMNT=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='\"1.0.0.r1.130\"' " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/vcflib" EXAMPLESDIR="share/examples/vcflib" DATADIR="share/vcflib" WWWDIR="www/vcflib" ETCDIR="etc/vcflib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/vcflib DOCSDIR=/usr/local/share/doc/vcflib EXAMPLESDIR=/usr/local/share/examples/vcflib WWWDIR=/usr/local/www/vcflib ETCDIR=/usr/local/etc/vcflib --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv2 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MIT accepted by the user =========================================================================== =================================================== ===> vcflib-1.0.0.r1.130_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [130powerpc64-quarterly-job-05] Installing pkg-1.16.3... [130powerpc64-quarterly-job-05] Extracting pkg-1.16.3: .......... done ===> vcflib-1.0.0.r1.130_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of vcflib-1.0.0.r1.130_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building => SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building ===> Extracting for vcflib-1.0.0.r1.130_1 => SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for vcflib-1.0.0.r1.130_1 ===> Applying FreeBSD patches for vcflib-1.0.0.r1.130_1 from /usr/ports/biology/vcflib/files =========================================================================== =================================================== ===> vcflib-1.0.0.r1.130_1 depends on executable: fastahack - not found ===> Installing existing package /packages/All/fastahack-1.0.0.txz [130powerpc64-quarterly-job-05] Installing fastahack-1.0.0... [130powerpc64-quarterly-job-05] Extracting fastahack-1.0.0: .......... done ===> vcflib-1.0.0.r1.130_1 depends on executable: fastahack - found ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on executable: filevercmp - not found ===> Installing existing package /packages/All/filevercmp-g20151117.txz [130powerpc64-quarterly-job-05] Installing filevercmp-g20151117... [130powerpc64-quarterly-job-05] Extracting filevercmp-g20151117: ...... done ===> vcflib-1.0.0.r1.130_1 depends on executable: filevercmp - found ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on executable: fsom - not found ===> Installing existing package /packages/All/fsom-g20151117_2.txz [130powerpc64-quarterly-job-05] Installing fsom-g20151117_2... [130powerpc64-quarterly-job-05] Extracting fsom-g20151117_2: ........ done ===> vcflib-1.0.0.r1.130_1 depends on executable: fsom - found ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on package: multichoose>=1.0.3 - not found ===> Installing existing package /packages/All/multichoose-1.0.3.2.txz [130powerpc64-quarterly-job-05] Installing multichoose-1.0.3.2... [130powerpc64-quarterly-job-05] `-- Installing python38-3.8.10... [130powerpc64-quarterly-job-05] | `-- Installing gettext-runtime-0.21... [130powerpc64-quarterly-job-05] | | `-- Installing indexinfo-0.3.1... [130powerpc64-quarterly-job-05] | | `-- Extracting indexinfo-0.3.1: .... done [130powerpc64-quarterly-job-05] | `-- Extracting gettext-runtime-0.21: .......... done [130powerpc64-quarterly-job-05] | `-- Installing libffi-3.3_1... [130powerpc64-quarterly-job-05] | `-- Extracting libffi-3.3_1: .......... done [130powerpc64-quarterly-job-05] | `-- Installing mpdecimal-2.5.1... [130powerpc64-quarterly-job-05] | `-- Extracting mpdecimal-2.5.1: .......... done [130powerpc64-quarterly-job-05] | `-- Installing readline-8.1.1... [130powerpc64-quarterly-job-05] | `-- Extracting readline-8.1.1: .......... done [130powerpc64-quarterly-job-05] `-- Extracting python38-3.8.10: .......... done [130powerpc64-quarterly-job-05] Extracting multichoose-1.0.3.2: .......... done ===== Message from python38-3.8.10: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py38-gdbm databases/py-gdbm@py38 py38-sqlite3 databases/py-sqlite3@py38 py38-tkinter x11-toolkits/py-tkinter@py38 ===> vcflib-1.0.0.r1.130_1 depends on package: multichoose>=1.0.3 - found ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on executable: interval_tree_test - not found ===> Installing existing package /packages/All/intervaltree-g20151213_2.txz [130powerpc64-quarterly-job-05] Installing intervaltree-g20151213_2... [130powerpc64-quarterly-job-05] Extracting intervaltree-g20151213_2: ..... done ===> vcflib-1.0.0.r1.130_1 depends on executable: interval_tree_test - found ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [130powerpc64-quarterly-job-05] Installing gmake-4.3_2... [130powerpc64-quarterly-job-05] Extracting gmake-4.3_2: .......... done ===> vcflib-1.0.0.r1.130_1 depends on package: gmake>=4.3 - found ===> Returning to build of vcflib-1.0.0.r1.130_1 =========================================================================== =================================================== ===> vcflib-1.0.0.r1.130_1 depends on shared library: libhts.so - not found ===> Installing existing package /packages/All/htslib-1.12.txz [130powerpc64-quarterly-job-05] Installing htslib-1.12... [130powerpc64-quarterly-job-05] `-- Installing curl-7.77.0... [130powerpc64-quarterly-job-05] | `-- Installing ca_root_nss-3.63... [130powerpc64-quarterly-job-05] | `-- Extracting ca_root_nss-3.63: ........ done [130powerpc64-quarterly-job-05] | `-- Installing libnghttp2-1.43.0... [130powerpc64-quarterly-job-05] | `-- Extracting libnghttp2-1.43.0: .......... done [130powerpc64-quarterly-job-05] `-- Extracting curl-7.77.0: .......... done [130powerpc64-quarterly-job-05] `-- Installing libdeflate-1.7... [130powerpc64-quarterly-job-05] `-- Extracting libdeflate-1.7: .......... done [130powerpc64-quarterly-job-05] Extracting htslib-1.12: .......... done ===== Message from ca_root_nss-3.63: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> vcflib-1.0.0.r1.130_1 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so) ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on shared library: libtabix.so - not found ===> Installing existing package /packages/All/tabixpp-1.0.0.10_1.txz [130powerpc64-quarterly-job-05] Installing tabixpp-1.0.0.10_1... [130powerpc64-quarterly-job-05] Extracting tabixpp-1.0.0.10_1: ........ done ===> vcflib-1.0.0.r1.130_1 depends on shared library: libtabix.so - found (/usr/local/lib/libtabix.so) ===> Returning to build of vcflib-1.0.0.r1.130_1 ===> vcflib-1.0.0.r1.130_1 depends on shared library: libsw.so - not found ===> Installing existing package /packages/All/smithwaterman-g20160702.txz [130powerpc64-quarterly-job-05] Installing smithwaterman-g20160702... [130powerpc64-quarterly-job-05] Extracting smithwaterman-g20160702: .......... done ===> vcflib-1.0.0.r1.130_1 depends on shared library: libsw.so - found (/usr/local/lib/libsw.so) ===> Returning to build of vcflib-1.0.0.r1.130_1 =========================================================================== =================================================== ===> Configuring for vcflib-1.0.0.r1.130_1 =========================================================================== =================================================== ===> Building for vcflib-1.0.0.r1.130_1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806' c++ -c -o src/Variant.o src/Variant.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/rnglib.o src/rnglib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 src/Variant.cpp:174:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] }; ^ src/Variant.cpp:502:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ src/Variant.cpp:627:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ src/Variant.cpp:661:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ src/Variant.cpp:699:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ c++ -c -o src/var.o src/var.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/pdflib.o src/pdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/cdflib.o src/cdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/split.o src/split.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 -c -o src/ssw.o src/ssw.cpp In file included from src/ssw.cpp:38: In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13: In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13: /usr/lib/clang/11.0.1/include/mmintrin.h:33:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? __builtin_ia32_emms(); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:33:5: note: '__builtin_isless' declared here /usr/lib/clang/11.0.1/include/mmintrin.h:33:25: error: too few arguments to function call, expected 2, have 0 __builtin_ia32_emms(); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:50:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si' return (__m64)__builtin_ia32_vec_init_v2si(__i, 0); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:67:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si' return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:129:19: error: use of undeclared identifier '__builtin_ia32_packsswb' return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:159:19: error: use of undeclared identifier '__builtin_ia32_packssdw' return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:189:19: error: use of undeclared identifier '__builtin_ia32_packuswb' return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw' return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:239:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd' return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:260:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq' return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:287:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw' return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:310:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd' return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:331:19: error: use of undeclared identifier '__builtin_ia32_punpckldq' return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:352:19: error: use of undeclared identifier '__builtin_ia32_paddb' return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:373:19: error: use of undeclared identifier '__builtin_ia32_paddw' return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:394:19: error: use of undeclared identifier '__builtin_ia32_paddd' return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:416:19: error: use of undeclared identifier '__builtin_ia32_paddsb' return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:439:19: error: use of undeclared identifier '__builtin_ia32_paddsw' return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/11.0.1/include/mmintrin.h:461:19: error: use of undeclared identifier '__builtin_ia32_paddusb' return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. gmake[1]: *** [: src/ssw.o] Error 1 gmake[1]: *** Waiting for unfinished jobs.... 5 warnings generated. gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/vcflib