[package - 130arm64-quarterly][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-22.0.0 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Wed, 14 Jul 2021 17:58:29 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://ampere1.nyi.freebsd.org/data/130arm64-quarterly/1a1fe9490464/logs/ncbi-cxx-toolkit-22.0.0.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=130arm64-quarterly&build=1a1fe9490464
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Wed Jul 14 17:34:22 UTC 2021
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-22.0.0
building for: FreeBSD 130arm64-quarterly-job-12 13.0-RELEASE-p3 FreeBSD 13.0-RELEASE-p3 arm64
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1300139
Job Id: 12
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300139
UNAME_v=FreeBSD 13.0-RELEASE-p3
UNAME_r=13.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/130arm64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/130arm64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=130arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/130arm64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--without-debug --with-dll --without-static --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=aarch64
OPSYS=FreeBSD
_OSRELEASE=13.0-RELEASE-p3
OSREL=13.0
OSVERSION=1300139
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-cxx-toolkit-22.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130arm64-quarterly-job-12] Installing pkg-1.16.3...
[130arm64-quarterly-job-12] Extracting pkg-1.16.3: .......... done
===> ncbi-cxx-toolkit-22.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-22.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
=> SHA256 Checksum OK for ncbi_cxx--22_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-22.0.0 for building
===> Extracting for ncbi-cxx-toolkit-22.0.0
=> SHA256 Checksum OK for ncbi_cxx--22_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-cxx-toolkit-22.0.0
===> Applying FreeBSD patches for ncbi-cxx-toolkit-22.0.0 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-cxx-toolkit-22.0.0 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[130arm64-quarterly-job-12] Installing gmake-4.3_2...
[130arm64-quarterly-job-12] `-- Installing gettext-runtime-0.21...
[130arm64-quarterly-job-12] | `-- Installing indexinfo-0.3.1...
[130arm64-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done
[130arm64-quarterly-job-12] `-- Extracting gettext-runtime-0.21: .......... done
[130arm64-quarterly-job-12] Extracting gmake-4.3_2: .......... done
===> ncbi-cxx-toolkit-22.0.0 depends on package: gmake>=4.3 - found
===> Returning to build of ncbi-cxx-toolkit-22.0.0
===> ncbi-cxx-toolkit-22.0.0 depends on file: /usr/local/bin/python3.8 - not found
===> Installing existing package /packages/All/python38-3.8.10.txz
[130arm64-quarterly-job-12] Installing python38-3.8.10...
[130arm64-quarterly-job-12] `-- Installing libffi-3.3_1...
[130arm64-quarterly-job-12] `-- Extracting libffi-3.3_1: .......... done
[130arm64-quarterly-job-12] `-- Installing mpdecimal-2.5.1...
[130arm64-quarterly-job-12] `-- Extracting mpdecimal-2.5.1: .......... done
[130arm64-quarterly-job-12] `-- Installing readline-8.1.1...
[130arm64-quarterly-job-12] `-- Extracting readline-8.1.1: .......... done
<snip>
virtual const char* GetErrCodeString() const
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netservice_api_expt.hpp:57:25: note: overridden virtual function is here
virtual const char* GetErrCodeString(void) const
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:42:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api_expt.hpp:109:25: warning: 'GetErrCodeString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual const char* GetErrCodeString() const
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api_expt.hpp:78:25: note: overridden virtual function is here
virtual const char* GetErrCodeString() const
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:674:5: warning: 'auto_ptr<std::__1::basic_istream<char>>' is deprecated [-Wdeprecated-declarations]
auto_ptr<CNcbiIstream> m_IStream;
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<std::__1::basic_istream<char>>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/netcache_api.hpp:675:5: warning: 'auto_ptr<std::__1::basic_ostream<char>>' is deprecated [-Wdeprecated-declarations]
auto_ptr<CNcbiOstream> m_OStream;
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<std::__1::basic_ostream<char>>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:67:5: warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated [-Wdeprecated-declarations]
auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<ncbi::CArgDescriptions>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:108:5: warning: 'auto_ptr<ncbi::IBlobStorage>' is deprecated [-Wdeprecated-declarations]
auto_ptr<IBlobStorage> storage1(new CBlobStorage_NetCache(nc_api));
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<ncbi::IBlobStorage>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp:109:5: warning: 'auto_ptr<ncbi::IBlobStorage>' is deprecated [-Wdeprecated-declarations]
auto_ptr<IBlobStorage> storage2(new CBlobStorage_NetCache(nc_api));
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<ncbi::IBlobStorage>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
13 warnings generated.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_nsstorage.cpp -o test_nsstorage.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_nsstorage.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lxconnserv -lxconnect -lxutil -lxncbi -lz -lm -pthread -o test_nsstorage
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/scripts/common/impl/if_diff.sh /bin/ln -f test_nsstorage /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin
/bin/ln -f test_nsstorage /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin/test_nsstorage
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE: skipping project "test_ic_client" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE: skipping project "test_netcache_api" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE: skipping project "test_json_over_uttp" due to unmet requirements
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test TMPL=test_compound_id -w -j2 --jobserver-auth=17,18 all
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/connect/services/compound_id.hpp:99:25: warning: 'GetErrCodeString' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual const char* GetErrCodeString() const;
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include/corelib/ncbiexpt.hpp:852:25: note: overridden virtual function is here
virtual const char* GetErrCodeString(void) const;
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp:211:5: warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated [-Wdeprecated-declarations]
auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
^
/usr/include/c++/v1/memory:2029:28: note: 'auto_ptr<ncbi::CArgDescriptions>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
2 warnings generated.
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/services/test/test_compound_id.cpp -o test_compound_id.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_compound_id.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lxconnserv -lxthrserv -lxconnect -lxutil -lxncbi -lz -lm -pthread -o test_compound_id
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/scripts/common/impl/if_diff.sh /bin/ln -f test_compound_id /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin
/bin/ln -f test_compound_id /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/bin/test_compound_id
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[7]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[7]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
NOTE: skipping project "test_netservice_params" due to unmet requirements
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services/test'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/services'
/usr/local/bin/gmake -C ext -w -j2 --jobserver-auth=11,12 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/ext'
/usr/local/bin/gmake -C test -w -j2 --jobserver-auth=11,12 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[4]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[5]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test TMPL=test_ncbi_buffer -w -j2 --jobserver-auth=15,16 all
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
ld: error: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib/libconnect.so: undefined reference to NCBI_SwapPointers [--no-allow-shlib-undefined]
c++: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/Makefile.app:156: test_ncbi_buffer] Error 1
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test/test_ncbi_buffer.c.
/usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/include /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/connect/test/test_ncbi_buffer.c -o test_ncbi_buffer.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O test_ncbi_buffer.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/lib -lconnect -lz -lm -pthread -o test_ncbi_buffer
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
FAILED: src/connect/test/Makefile.test_ncbi_buffer.app
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[6]: warning: -j2 forced in submake: resetting jobserver mode.
/bin/rm -f test_ncbi_buffer .test_ncbi_buffer.stamp
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_l:319: all.nonusr] Error 2
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_l:276: all_l.real] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect/test'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build/connect'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0/Clang-ReleaseMTDLL64/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--22_0_0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit