[package - main-amd64-default][math/parmetis] Failed for ParMetis-4.0.3_7 in configure
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Date: Thu, 30 Dec 2021 01:39:06 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/pb62f24f32e66_sc3a688ef4d/logs/ParMetis-4.0.3_7.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=pb62f24f32e66_sc3a688ef4d
Log:
=>> Building math/parmetis
build started at Thu Dec 30 01:38:47 UTC 2021
port directory: /usr/ports/math/parmetis
package name: ParMetis-4.0.3_7
building for: FreeBSD main-amd64-default-job-10 14.0-CURRENT FreeBSD 14.0-CURRENT 1400045 amd64
maintained by: ports@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400042
Jail OSVERSION: 1400045
Job Id: 10
!!! Jail is newer than host. (Jail: 1400045, Host: 1400042) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400045
UNAME_v=FreeBSD 14.0-CURRENT 1400045
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-21-g883afb07
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for ParMetis-4.0.3_7:
DOCS=on: Build and/or install documentation
OPENMPI=off: Use openmpi instead of mpich
STATIC=off: Do not build and install shared library
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/math/parmetis/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/parmetis/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/parmetis/work/.cache HOME=/wrkdirs/usr/ports/math/parmetis/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/parmetis/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/math/parmetis/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/parmetis/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/parmetis/work/.cache HOME=/wrkdirs/usr/ports/math/parmetis/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/parmetis/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" DOCS="" NO_DOCS="@comment " OPENMPI="@comment " NO_OPENMPI="" STATIC="@comment " NO_STATIC="" CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ParMetis" EXAMPLESDIR="share/examples/ParMetis" DATADIR="share/ParMetis" WWWDIR="www/ParMetis" ETCDIR="etc/ParMetis"
--End PLIST_SUB--
--SUB_LIST--
DOCS="" NO_DOCS="@comment " OPENMPI="@comment " NO_OPENMPI="" STATIC="@comment " NO_STATIC="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ParMetis DOCSDIR=/usr/local/share/doc/ParMetis EXAMPLESDIR=/usr/local/share/examples/ParMetis WWWDIR=/usr/local/www/ParMetis ETCDIR=/usr/local/etc/ParMetis
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CXXINTERNAL_acaad9ca=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "c++"
CC_OUTPUT_921dbbb2_58173849=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_9bdba57c=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_6a4fe7f5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_6bcac02b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_67d20829=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_bfa62e83=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f0b4d593=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_308abb44=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f00456e5=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_65ad290d=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_f2776b26=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_b2657cc3=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_380987f7=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_160933ec=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
CC_OUTPUT_921dbbb2_fb62803b=ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400045
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The ParMetis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License METIS accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ParMetis-4.0.3_7 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[main-amd64-default-job-10] Installing pkg-1.17.5...
[main-amd64-default-job-10] Extracting pkg-1.17.5: .......... done
===> ParMetis-4.0.3_7 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ParMetis-4.0.3_7
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The ParMetis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License METIS accepted by the user
=> parmetis-4.0.3.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz
parmetis-4.0.3.tar.gz 5437 kB 7346 kBps 01s
===> Fetching all distfiles required by ParMetis-4.0.3_7 for building
===========================================================================
<snip>
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License METIS accepted by the user
===> Fetching all distfiles required by ParMetis-4.0.3_7 for building
===> Extracting for ParMetis-4.0.3_7
=> SHA256 Checksum OK for parmetis-4.0.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ParMetis-4.0.3_7
===> Applying FreeBSD patches for ParMetis-4.0.3_7 from /usr/ports/math/parmetis/files
===========================================================================
=======================<phase: build-depends >============================
===> ParMetis-4.0.3_7 depends on file: /usr/local/bin/mpicc - not found
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang"
make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status
===> Installing existing package /packages/All/mpich-3.4.3.pkg
[main-amd64-default-job-10] Installing mpich-3.4.3...
[main-amd64-default-job-10] `-- Installing bash-5.1.12...
[main-amd64-default-job-10] | `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-10] | | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-10] | | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-10] | `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-10] | `-- Installing readline-8.1.1...
[main-amd64-default-job-10] | `-- Extracting readline-8.1.1: .......... done
[main-amd64-default-job-10] `-- Extracting bash-5.1.12: .......... done
[main-amd64-default-job-10] `-- Installing gcc10-10.3.0...
[main-amd64-default-job-10] | `-- Installing binutils-2.37_2,1...
[main-amd64-default-job-10] | `-- Extracting binutils-2.37_2,1: .......... done
[main-amd64-default-job-10] | `-- Installing gmp-6.2.1...
[main-amd64-default-job-10] | `-- Extracting gmp-6.2.1: .......... done
[main-amd64-default-job-10] | `-- Installing mpc-1.2.1...
[main-amd64-default-job-10] | | `-- Installing mpfr-4.1.0_1...
[main-amd64-default-job-10] | | `-- Extracting mpfr-4.1.0_1: .......... done
[main-amd64-default-job-10] | `-- Extracting mpc-1.2.1: ......... done
[main-amd64-default-job-10] `-- Extracting gcc10-10.3.0: .......... done
[main-amd64-default-job-10] `-- Installing hwloc2-2.5.0...
[main-amd64-default-job-10] | `-- Installing level-zero-1.7.4...
[main-amd64-default-job-10] | `-- Extracting level-zero-1.7.4: .......... done
[main-amd64-default-job-10] | `-- Installing libpciaccess-0.16...
[main-amd64-default-job-10] | | `-- Installing pciids-20211124...
[main-amd64-default-job-10] | | `-- Extracting pciids-20211124: ..... done
[main-amd64-default-job-10] | `-- Extracting libpciaccess-0.16: ......... done
[main-amd64-default-job-10] | `-- Installing libxml2-2.9.12...
[main-amd64-default-job-10] | `-- Extracting libxml2-2.9.12: .......... done
[main-amd64-default-job-10] `-- Extracting hwloc2-2.5.0: .......... done
[main-amd64-default-job-10] `-- Installing json-c-0.15_1...
[main-amd64-default-job-10] `-- Extracting json-c-0.15_1: .......... done
[main-amd64-default-job-10] `-- Installing libepoll-shim-0.0.20210418...
[main-amd64-default-job-10] `-- Extracting libepoll-shim-0.0.20210418: .......... done
[main-amd64-default-job-10] `-- Installing libfabric-1.14.0...
[main-amd64-default-job-10] `-- Extracting libfabric-1.14.0: .......... done
[main-amd64-default-job-10] `-- Installing perl5-5.32.1_1...
[main-amd64-default-job-10] `-- Extracting perl5-5.32.1_1: .......... done
[main-amd64-default-job-10] `-- Installing slurm-wlm-20.02.7...
[main-amd64-default-job-10] | `-- Installing hdf-szip-2.1.1...
[main-amd64-default-job-10] | `-- Extracting hdf-szip-2.1.1: .......... done
[main-amd64-default-job-10] | `-- Installing hdf5-1.10.6,1...
[main-amd64-default-job-10] | `-- Extracting hdf5-1.10.6,1: .......... done
[main-amd64-default-job-10] | `-- Installing liblz4-1.9.3,1...
[main-amd64-default-job-10] | `-- Extracting liblz4-1.9.3,1: .......... done
[main-amd64-default-job-10] | `-- Installing libsysinfo-0.0.3_2...
[main-amd64-default-job-10] | `-- Extracting libsysinfo-0.0.3_2: ......... done
[main-amd64-default-job-10] | `-- Installing lua52-5.2.4...
[main-amd64-default-job-10] | | `-- Installing libedit-3.1.20210216,1...
[main-amd64-default-job-10] | | `-- Extracting libedit-3.1.20210216,1: .......... done
[main-amd64-default-job-10] | `-- Extracting lua52-5.2.4: ......... done
[main-amd64-default-job-10] | `-- Installing munge-0.5.14_1...
[main-amd64-default-job-10] | `-- Extracting munge-0.5.14_1: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[main-amd64-default-job-10] `-- Extracting slurm-wlm-20.02.7: .......... done
[main-amd64-default-job-10] Extracting mpich-3.4.3: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from slurm-wlm-20.02.7:
--
===> NOTICE:
The slurm-wlm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from mpich-3.4.3:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> ParMetis-4.0.3_7 depends on file: /usr/local/bin/mpicc - found
===> Returning to build of ParMetis-4.0.3_7
===> ParMetis-4.0.3_7 depends on file: /usr/local/bin/cmake - not found
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cc"
make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 73: warning: "cc --version" returned non-zero status
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "clang"
make[1]: "/usr/ports/Mk/Uses/compiler.mk" line 92: warning: "/usr/bin/clang --version" returned non-zero status
===> Installing existing package /packages/All/cmake-3.22.1.pkg
[main-amd64-default-job-10] Installing cmake-3.22.1...
[main-amd64-default-job-10] `-- Installing curl-7.80.0...
[main-amd64-default-job-10] | `-- Installing ca_root_nss-3.71...
[main-amd64-default-job-10] | `-- Extracting ca_root_nss-3.71: ........ done
[main-amd64-default-job-10] | `-- Installing libnghttp2-1.46.0...
[main-amd64-default-job-10] | `-- Extracting libnghttp2-1.46.0: .......... done
[main-amd64-default-job-10] | `-- Installing libssh2-1.10.0,3...
[main-amd64-default-job-10] | `-- Extracting libssh2-1.10.0,3: .......... done
[main-amd64-default-job-10] `-- Extracting curl-7.80.0: .......... done
[main-amd64-default-job-10] `-- Installing expat-2.4.2...
[main-amd64-default-job-10] `-- Extracting expat-2.4.2: .......... done
[main-amd64-default-job-10] `-- Installing jsoncpp-1.9.5...
[main-amd64-default-job-10] `-- Extracting jsoncpp-1.9.5: .......... done
[main-amd64-default-job-10] `-- Installing libarchive-3.5.2,1...
[main-amd64-default-job-10] | `-- Installing zstd-1.5.0...
[main-amd64-default-job-10] | `-- Extracting zstd-1.5.0: .......... done
[main-amd64-default-job-10] `-- Extracting libarchive-3.5.2,1: .......... done
[main-amd64-default-job-10] `-- Installing libuv-1.42.0...
[main-amd64-default-job-10] `-- Extracting libuv-1.42.0: .......... done
[main-amd64-default-job-10] `-- Installing rhash-1.4.2...
[main-amd64-default-job-10] `-- Extracting rhash-1.4.2: .......... done
[main-amd64-default-job-10] Extracting cmake-3.22.1: .......... done
=====
Message from ca_root_nss-3.71:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> ParMetis-4.0.3_7 depends on file: /usr/local/bin/cmake - found
===> Returning to build of ParMetis-4.0.3_7
===> ParMetis-4.0.3_7 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[main-amd64-default-job-10] Installing gmake-4.3_2...
[main-amd64-default-job-10] Extracting gmake-4.3_2: .......... done
===> ParMetis-4.0.3_7 depends on package: gmake>=4.3 - found
===> Returning to build of ParMetis-4.0.3_7
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for ParMetis-4.0.3_7
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/parmetis/work/parmetis-4.0.3'
rm -rf build
mkdir -p build
cd build && cmake /wrkdirs/usr/ports/math/parmetis/work/parmetis-4.0.3 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=/wrkdirs/usr/ports/math/parmetis/work/parmetis-4.0.3/metis/GKlib -DMETIS_PATH=/wrkdirs/usr/ports/math/parmetis/work/parmetis-4.0.3/metis -DCMAKE_INSTALL_PREFIX=/usr/local -DSHARED=1 -DCMAKE_C_COMPILER=/usr/local/bin/mpicc -DCMAKE_CXX_COMPILER=/usr/local/bin/mpicxx
ld-elf.so.1: Shared object "libc++.so.1" not found, required by "cmake"
gmake[1]: *** [Makefile:77: config] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/parmetis/work/parmetis-4.0.3'
*** Error code 2
Stop.
make: stopped in /usr/ports/math/parmetis