[package - main-arm64-default][science/opensim-core] Failed for OpenSim-core-4.1_4 in configure
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Date: Fri, 03 Dec 2021 18:00:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/pb8c4bfe660b3_s610d908f8a/logs/OpenSim-core-4.1_4.log
Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=pb8c4bfe660b3_s610d908f8a
Log:
=>> Building science/opensim-core
build started at Fri Dec 3 17:59:44 UTC 2021
port directory: /usr/ports/science/opensim-core
package name: OpenSim-core-4.1_4
building for: FreeBSD main-arm64-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400043 arm64
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400043
Job Id: 02
!!! Jail is newer than host. (Jail: 1400043, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for OpenSim-core-4.1_4:
DOCS=on: Build and/or install documentation
JAVA=on: Java platform support
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
SIMBODY_HOME=/usr/local F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/opensim-core/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/opensim-core/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/opensim-core/work/.cache HOME=/wrkdirs/usr/ports/science/opensim-core/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/opensim-core/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
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--End MAKE_ENV--
--PLIST_SUB--
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> OpenSim-core-4.1_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.5.pkg
[main-arm64-default-job-02] Installing pkg-1.17.5...
[main-arm64-default-job-02] Extracting pkg-1.17.5: .......... done
===> OpenSim-core-4.1_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of OpenSim-core-4.1_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by OpenSim-core-4.1_4 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by OpenSim-core-4.1_4 for building
=> SHA256 Checksum OK for opensim-org-opensim-core-4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by OpenSim-core-4.1_4 for building
===> Extracting for OpenSim-core-4.1_4
=> SHA256 Checksum OK for opensim-org-opensim-core-4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for OpenSim-core-4.1_4
===> Applying FreeBSD patches for OpenSim-core-4.1_4 from /usr/ports/science/opensim-core/files
===========================================================================
=======================<phase: build-depends >============================
===> OpenSim-core-4.1_4 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.1.12.pkg
[main-arm64-default-job-02] Installing bash-5.1.12...
[main-arm64-default-job-02] `-- Installing gettext-runtime-0.21...
<snip>
===> Installing existing package /packages/All/cmake-3.21.4_1.pkg
[main-arm64-default-job-02] Installing cmake-3.21.4_1...
[main-arm64-default-job-02] `-- Installing curl-7.80.0...
[main-arm64-default-job-02] | `-- Installing ca_root_nss-3.71...
[main-arm64-default-job-02] | `-- Extracting ca_root_nss-3.71: ........ done
[main-arm64-default-job-02] | `-- Installing libnghttp2-1.46.0...
[main-arm64-default-job-02] | `-- Extracting libnghttp2-1.46.0: .......... done
[main-arm64-default-job-02] | `-- Installing libssh2-1.9.0_3,3...
[main-arm64-default-job-02] | `-- Extracting libssh2-1.9.0_3,3: .......... done
[main-arm64-default-job-02] `-- Extracting curl-7.80.0: .......... done
[main-arm64-default-job-02] `-- Installing jsoncpp-1.9.5...
[main-arm64-default-job-02] `-- Extracting jsoncpp-1.9.5: .......... done
[main-arm64-default-job-02] `-- Installing libarchive-3.5.2,1...
[main-arm64-default-job-02] | `-- Installing liblz4-1.9.3,1...
[main-arm64-default-job-02] | `-- Extracting liblz4-1.9.3,1: .......... done
[main-arm64-default-job-02] | `-- Installing zstd-1.5.0...
[main-arm64-default-job-02] | `-- Extracting zstd-1.5.0: .......... done
[main-arm64-default-job-02] `-- Extracting libarchive-3.5.2,1: .......... done
[main-arm64-default-job-02] `-- Installing libuv-1.42.0...
[main-arm64-default-job-02] `-- Extracting libuv-1.42.0: .......... done
[main-arm64-default-job-02] `-- Installing rhash-1.4.2...
[main-arm64-default-job-02] `-- Extracting rhash-1.4.2: .......... done
[main-arm64-default-job-02] Extracting cmake-3.21.4_1: .......... done
=====
Message from ca_root_nss-3.71:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> OpenSim-core-4.1_4 depends on file: /usr/local/bin/cmake - found
===> Returning to build of OpenSim-core-4.1_4
===> OpenSim-core-4.1_4 depends on executable: gfortran10 - not found
===> Installing existing package /packages/All/gcc10-10.3.0.pkg
[main-arm64-default-job-02] Installing gcc10-10.3.0...
[main-arm64-default-job-02] `-- Installing binutils-2.37_2,1...
[main-arm64-default-job-02] `-- Extracting binutils-2.37_2,1: .......... done
[main-arm64-default-job-02] `-- Installing gmp-6.2.1...
[main-arm64-default-job-02] `-- Extracting gmp-6.2.1: .......... done
[main-arm64-default-job-02] `-- Installing mpc-1.2.1...
[main-arm64-default-job-02] | `-- Installing mpfr-4.1.0_1...
[main-arm64-default-job-02] | `-- Extracting mpfr-4.1.0_1: .......... done
[main-arm64-default-job-02] `-- Extracting mpc-1.2.1: ......... done
[main-arm64-default-job-02] Extracting gcc10-10.3.0: .......... done
=====
Message from gcc10-10.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> OpenSim-core-4.1_4 depends on executable: gfortran10 - found
===> Returning to build of OpenSim-core-4.1_4
===> OpenSim-core-4.1_4 depends on file: /usr/local/bin/python3.8 - not found
===> Installing existing package /packages/All/python38-3.8.12_1.pkg
[main-arm64-default-job-02] Installing python38-3.8.12_1...
[main-arm64-default-job-02] `-- Installing libffi-3.3_1...
[main-arm64-default-job-02] `-- Extracting libffi-3.3_1: .......... done
[main-arm64-default-job-02] `-- Installing mpdecimal-2.5.1...
[main-arm64-default-job-02] `-- Extracting mpdecimal-2.5.1: .......... done
[main-arm64-default-job-02] Extracting python38-3.8.12_1: .......... done
=====
Message from python38-3.8.12_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm@py38
py38-sqlite3 databases/py-sqlite3@py38
py38-tkinter x11-toolkits/py-tkinter@py38
===> OpenSim-core-4.1_4 depends on file: /usr/local/bin/python3.8 - found
===> Returning to build of OpenSim-core-4.1_4
===> OpenSim-core-4.1_4 depends on file: /usr/local/bin/as - found
===> OpenSim-core-4.1_4 depends on package: xorgproto>=0 - found
===> OpenSim-core-4.1_4 depends on package: xorgproto>=0 - found
===> OpenSim-core-4.1_4 depends on file: /usr/local/libdata/pkgconfig/xi.pc - found
===> OpenSim-core-4.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found
===> Installing existing package /packages/All/libXmu-1.1.3,1.pkg
[main-arm64-default-job-02] Installing libXmu-1.1.3,1...
[main-arm64-default-job-02] Extracting libXmu-1.1.3,1: .......... done
===> OpenSim-core-4.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found
===> Returning to build of OpenSim-core-4.1_4
===========================================================================
=======================<phase: lib-depends >============================
===> OpenSim-core-4.1_4 depends on shared library: libdocopt.so - not found
===> Installing existing package /packages/All/docopt.cpp-0.6.3.pkg
[main-arm64-default-job-02] Installing docopt.cpp-0.6.3...
[main-arm64-default-job-02] Extracting docopt.cpp-0.6.3: .......... done
===> OpenSim-core-4.1_4 depends on shared library: libdocopt.so - found (/usr/local/lib/libdocopt.so)
===> Returning to build of OpenSim-core-4.1_4
===> OpenSim-core-4.1_4 depends on shared library: libSimTKcommon.so - not found
===> Installing existing package /packages/All/simbody-3.7_4.pkg
[main-arm64-default-job-02] Installing simbody-3.7_4...
[main-arm64-default-job-02] `-- Installing freeglut-3.2.1...
[main-arm64-default-job-02] | `-- Installing libGLU-9.0.2_1...
[main-arm64-default-job-02] | | `-- Installing libglvnd-1.3.4...
[main-arm64-default-job-02] | | `-- Extracting libglvnd-1.3.4: .......... done
[main-arm64-default-job-02] | `-- Extracting libGLU-9.0.2_1: ..... done
[main-arm64-default-job-02] | `-- Installing libXrandr-1.5.2...
[main-arm64-default-job-02] | `-- Extracting libXrandr-1.5.2: .......... done
[main-arm64-default-job-02] | `-- Installing libXxf86vm-1.1.4_3...
[main-arm64-default-job-02] | `-- Extracting libXxf86vm-1.1.4_3: .......... done
[main-arm64-default-job-02] `-- Extracting freeglut-3.2.1: .......... done
[main-arm64-default-job-02] `-- Installing openblas-0.3.18,1...
[main-arm64-default-job-02] `-- Extracting openblas-0.3.18,1: .......... done
[main-arm64-default-job-02] Extracting simbody-3.7_4: .......... done
=====
Message from freeglut-3.2.1:
--
Joystick support is untested and it is unknown if it works.
Do not hesitate to contact x11@FreeBSD.org if this causes issues.
===> OpenSim-core-4.1_4 depends on shared library: libSimTKcommon.so - found (/usr/local/lib/libSimTKcommon.so)
===> Returning to build of OpenSim-core-4.1_4
===> OpenSim-core-4.1_4 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> OpenSim-core-4.1_4 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so)
===> OpenSim-core-4.1_4 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so)
===> OpenSim-core-4.1_4 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for OpenSim-core-4.1_4
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/opensim-core/work/.build
-- The C compiler identification is Clang 13.0.0
-- The CXX compiler identification is Clang 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- NOTICE: Make sure all OpenSim dependencies are built with the same CMAKE_BUILD_TYPE (Linux) or CONFIGURATION (Xcode/MSVC) as OpenSim to avoid mysterious runtime errors.
-- Could NOT find Matlab (missing: Matlab_INCLUDE_DIRS Matlab_MEX_LIBRARY Matlab_MEX_EXTENSION Matlab_ROOT_DIR MAIN_PROGRAM) (found version "NOTFOUND")
CMake Warning at CMakeLists.txt:452 (message):
BUILD_JAVA_WRAPPING is ON but OPENSIM_COPY_DEPENDENCIES is OFF. Wrapping
may not work correctly. Consider switching the OPENSIM_COPY_DEPENDENCIES
flag to ON.
-- Found PythonInterp: /usr/local/bin/python3.8 (found suitable version "3.8.12", minimum required is "3")
-- Found PythonLibs: /usr/local/lib/libpython3.8.so (found suitable version "3.8.12", minimum required is "3")
CMake Warning at CMakeLists.txt:510 (message):
BUILD_PYTHON_WRAPPING is ON but OPENSIM_COPY_DEPENDENCIES is OFF. Wrapping
may not work correctly. Consider switching the OPENSIM_COPY_DEPENDENCIES
flag to ON.
-- Found SWIG: /usr/local/bin/swig (found suitable version "4.0.2", minimum required is "3.0.8")
-- Discovering dependencies for SWIG module simbody.
-- Discovering dependencies for SWIG module common.
-- Discovering dependencies for SWIG module simulation.
-- Discovering dependencies for SWIG module actuators.
-- Discovering dependencies for SWIG module analyses.
-- Discovering dependencies for SWIG module tools.
-- Discovering dependencies for SWIG module examplecomponents.
-- Found JNI: /usr/local/openjdk8/jre/lib/amd64/libawt.so (Required is at least version "1.7")
-- Discovering dependencies for SWIG module simbody.
-- Discovering dependencies for SWIG module common.
-- Discovering dependencies for SWIG module simulation.
-- Discovering dependencies for SWIG module actuators-analysis-tools.
-- Discovering dependencies for SWIG module examplecomponents.
CMake Error at /usr/local/share/cmake/Modules/FindJava.cmake:171 (message):
Error executing java -version
Call Stack (most recent call first):
Bindings/Java/CMakeLists.txt:71 (find_package)
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/opensim-core/work/.build/CMakeFiles/CMakeOutput.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/opensim-core