From nobody Thu Aug 12 17:56:33 2021 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 97B5417501E4 for ; Thu, 12 Aug 2021 17:56:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4GlvWj3f0Wz3N6n for ; Thu, 12 Aug 2021 17:56:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy7.nyi.freebsd.org (beefy7.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:16]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 64F8727425 for ; Thu, 12 Aug 2021 17:56:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy7.nyi.freebsd.org (localhost [127.0.0.1]) by beefy7.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 17CHuX7P007856 for ; Thu, 12 Aug 2021 17:56:33 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy7.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 17CHuXvB007852; Thu, 12 Aug 2021 17:56:33 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 12 Aug 2021 17:56:33 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202108121756.17CHuXvB007852@beefy7.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-riscv64-default][biology/stacks] Failed for stacks-2.4_2 in build X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: http://beefy7.nyi.freebsd.org/data/main-riscv64-default/p507d4271e0bb_sa3ff18e271/logs/stacks-2.4_2.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=main-riscv64-default&build=p507d4271e0bb_sa3ff18e271 Log: =>> Building biology/stacks build started at Thu Aug 12 17:55:21 UTC 2021 port directory: /usr/ports/biology/stacks package name: stacks-2.4_2 building for: FreeBSD main-riscv64-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400029 riscv maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1400029 Job Id: 01 !!! Jail is newer than host. (Jail: 1400029, Host: 1400008) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=riscv64 UNAME_m=riscv ABI_FILE=/usr/lib/crt1.o OSVERSION=1400029 UNAME_v=FreeBSD 14.0-CURRENT 1400029 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/usr/local/poudriere/data/.m/main-riscv64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-riscv64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-riscv64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-riscv64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stacks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stacks/work HOME=/wrkdirs/usr/ports/biology/stacks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stacks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stacks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stacks/work HOME=/wrkdirs/usr/ports/biology/stacks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stacks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -lpthread -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/stacks" EXAMPLESDIR="share/examples/stacks" DATADIR="share/stacks" WWWDIR="www/stacks" ETCDIR="etc/stacks" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/stacks DOCSDIR=/usr/local/share/doc/stacks EXAMPLESDIR=/usr/local/share/examples/stacks WWWDIR=/usr/local/www/stacks ETCDIR=/usr/local/etc/stacks --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=riscv MACHINE_ARCH=riscv64 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: riscv64-unknown-freebsd14.0 Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: riscv64-unknown-freebsd14.0 Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-m" "elf64lriscv" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: riscv64-unknown-freebsd14.0 Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=riscv64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400029 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> stacks-2.4_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.1.pkg [main-riscv64-default-job-01] Installing pkg-1.17.1... [main-riscv64-default-job-01] Extracting pkg-1.17.1: .......... done ===> stacks-2.4_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of stacks-2.4_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by stacks-2.4_2 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by stacks-2.4_2 for building checking for ar... ar checking the archiver (ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for float.h... (cached) yes checking for limits.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for /nxb-bin/usr/bin/cc option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... (cached) yes checking for _Bool... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking whether closedir returns void... no checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for memset... (cached) yes checking for pow... no checking for sqrt... no checking for clock_gettime... (cached) yes checking for functional regular expressions... yes checking for gawk... (cached) /usr/bin/awk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating htslib/Makefile config.status: creating config.h config.status: executing depfiles commands =========================================================================== =================================================== ===> Building for stacks-2.4_2 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4' gmake all-recursive gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4' Making all in htslib gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4/htslib' depbase=`echo bcf_sr_sort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT bcf_sr_sort.o -MD -MP -MF $depbase.Tpo -c -o bcf_sr_sort.o bcf_sr_sort.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bgzf.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT bgzf.o -MD -MP -MF $depbase.Tpo -c -o bgzf.o bgzf.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bgzip.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT bgzip.o -MD -MP -MF $depbase.Tpo -c -o bgzip.o bgzip.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_codecs.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_codecs.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_codecs.o cram/cram_codecs.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_decode.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_decode.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_decode.o cram/cram_decode.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_encode.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_encode.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_encode.o cram/cram_encode.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_external.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_external.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_external.o cram/cram_external.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_index.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_index.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_index.o cram/cram_index.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_io.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_io.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_io.o cram/cram_io.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_samtools.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT cram/cram_samtools.o -MD -MP -MF $depbase.Tpo -c -o cram/cram_samtools.o cram/cram_samtools.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cram/cram_stats.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc 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-fno-strict-aliasing -MT faidx.o -MD -MP -MF $depbase.Tpo -c -o faidx.o faidx.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo hfile.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT hfile.o -MD -MP -MF $depbase.Tpo -c -o hfile.o hfile.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo hfile_net.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT hfile_net.o -MD -MP -MF $depbase.Tpo -c -o hfile_net.o hfile_net.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo hts.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT hts.o -MD -MP -MF $depbase.Tpo -c -o hts.o hts.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo hts_os.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT hts_os.o -MD -MP -MF $depbase.Tpo -c -o hts_os.o hts_os.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo htsfile.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT htsfile.o -MD -MP -MF $depbase.Tpo -c -o htsfile.o htsfile.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo kfunc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT kfunc.o -MD -MP -MF $depbase.Tpo -c -o kfunc.o kfunc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo knetfile.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT knetfile.o -MD -MP -MF $depbase.Tpo -c -o knetfile.o knetfile.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo kstring.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT kstring.o -MD -MP -MF $depbase.Tpo -c -o kstring.o kstring.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo md5.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT md5.o -MD -MP -MF $depbase.Tpo -c -o md5.o md5.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo multipart.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT multipart.o -MD -MP -MF $depbase.Tpo -c -o multipart.o multipart.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo os/rand.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT os/rand.o -MD -MP -MF $depbase.Tpo -c -o os/rand.o os/rand.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo probaln.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT probaln.o -MD -MP -MF $depbase.Tpo -c -o probaln.o probaln.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo realn.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT realn.o -MD -MP -MF $depbase.Tpo -c -o realn.o realn.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo regidx.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT regidx.o -MD -MP -MF $depbase.Tpo -c -o regidx.o regidx.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo sam.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT sam.o -MD -MP -MF $depbase.Tpo -c -o sam.o sam.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo synced_bcf_reader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT synced_bcf_reader.o -MD -MP -MF $depbase.Tpo -c -o synced_bcf_reader.o synced_bcf_reader.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo tabix.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT tabix.o -MD -MP -MF $depbase.Tpo -c -o tabix.o tabix.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo tbx.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT tbx.o -MD -MP -MF $depbase.Tpo -c -o tbx.o tbx.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo textutils.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT textutils.o -MD -MP -MF $depbase.Tpo -c -o textutils.o textutils.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo thread_pool.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT thread_pool.o -MD -MP -MF $depbase.Tpo -c -o thread_pool.o thread_pool.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vcf.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT vcf.o -MD -MP -MF $depbase.Tpo -c -o vcf.o vcf.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vcf_sweep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT vcf_sweep.o -MD -MP -MF $depbase.Tpo -c -o vcf_sweep.o vcf_sweep.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vcfutils.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=rv64imafdc -mabi=lp64d -fstack-protector-strong -fno-strict-aliasing -MT vcfutils.o -MD -MP -MF $depbase.Tpo -c -o vcfutils.o vcfutils.c &&\ mv -f $depbase.Tpo $depbase.Po rm -f libhts.a ar cru libhts.a bcf_sr_sort.o bgzf.o bgzip.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o htsfile.o kfunc.o knetfile.o kstring.o md5.o multipart.o os/rand.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o tabix.o tbx.o textutils.o thread_pool.o vcf.o vcf_sweep.o vcfutils.o ranlib libhts.a Assertion failed: (mode == 'p' || mode == 't' || mode == 'x'), function ar_read_archive, file /usr/local/poudriere/jails/main-riscv64/usr/src/usr.bin/ar/read.c, line 68. qemu: uncaught target signal 6 (Abort trap) - core dumped gmake[3]: *** [Makefile:457: libhts.a] Abort trap gmake[3]: *** Deleting file 'libhts.a' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4/htslib' gmake[2]: *** [Makefile:1053: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4' gmake[1]: *** [Makefile:704: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/stacks/work/stacks-2.4' *** Error code 1 Stop. make: stopped in /usr/ports/biology/stacks