[package - main-arm64-default][science/silo] Failed for silo-4.10.2_14 in build
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Date: Thu, 12 Aug 2021 03:16:07 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: dbaio@FreeBSD.org
Log URL: http://ampere2.nyi.freebsd.org/data/main-arm64-default/p507d4271e0bb_s5ae48eb998/logs/silo-4.10.2_14.log
Build URL: http://ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=p507d4271e0bb_s5ae48eb998
Log:
=>> Building science/silo
build started at Thu Aug 12 03:15:51 UTC 2021
port directory: /usr/ports/science/silo
package name: silo-4.10.2_14
building for: FreeBSD main-arm64-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400029 arm64
maintained by: dbaio@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400029
Job Id: 02
!!! Jail is newer than host. (Jail: 1400029, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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PORT_FLAGS=
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DEPENDS_ARGS=
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---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for silo-4.10.2_14:
FORTRAN=off: Fortran language support
HDF5=on: HDF-5 data format support
PYTHON=off: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
dbaio@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-shared --disable-static --disable-fortran --with-hdf5=/usr/local/include,/usr/local/lib --disable-pythonmodule --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/silo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/silo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
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--End PLIST_SUB--
--SUB_LIST--
FORTRAN="@comment " NO_FORTRAN="" HDF5="" NO_HDF5="@comment " PYTHON="@comment " NO_PYTHON="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/silo DOCSDIR=/usr/local/share/doc/silo EXAMPLESDIR=/usr/local/share/examples/silo WWWDIR=/usr/local/www/silo ETCDIR=/usr/local/etc/silo
--End SUB_LIST--
---Begin make.conf---
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BATCH=yes
WRKDIRPREFIX=/wrkdirs
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> silo-4.10.2_14 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.17.1.pkg
[main-arm64-default-job-02] Installing pkg-1.17.1...
[main-arm64-default-job-02] Extracting pkg-1.17.1: .......... done
===> silo-4.10.2_14 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of silo-4.10.2_14
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by silo-4.10.2_14 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by silo-4.10.2_14 for building
=> SHA256 Checksum OK for silo-4.10.2-bsd.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by silo-4.10.2_14 for building
===> Extracting for silo-4.10.2_14
=> SHA256 Checksum OK for silo-4.10.2-bsd.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for silo-4.10.2_14
===> Applying FreeBSD patches for silo-4.10.2_14 from /usr/ports/science/silo/files
===========================================================================
=======================<phase: build-depends >============================
===> silo-4.10.2_14 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.pkg
[main-arm64-default-job-02] Installing gmake-4.3_2...
[main-arm64-default-job-02] `-- Installing gettext-runtime-0.21...
<snip>
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd14.0 ld.so
checking how to hardcode library paths into programs... immediate
checking for library containing strerror... none required
checking for hzip... hzip compression not available in BSD version
checking for fpzip... fpzip compression not available in BSD version
checking compiler optimization... disabled
checking whether C compiler accepts "-D_LARGEFILE_SOURCE"... yes
checking whether C compiler accepts "-D_LARGEFILE64_SOURCE"... yes
checking whether C compiler accepts "-D_FILE_OFFSET_BITS=64"... yes
checking whether C compiler accepts "-Wdeclaration-after-statement"... yes
checking size of off64_t... 8
checking for a BSD-compatible install... /usr/bin/install -c
checking for sys/time.h... (cached) yes
checking for stdarg.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for fcntl.h... (cached) yes
checking for sys/fcntl.h... (cached) yes
checking fnmatch.h usability... yes
checking fnmatch.h presence... yes
checking for fnmatch.h... yes
checking ieeefp.h usability... yes
checking ieeefp.h presence... yes
checking for ieeefp.h... yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for ANSI C header files... (cached) yes
checking for fclose function pointer... yes
checking for fflush function pointer... yes
checking for fopen function pointer... yes
checking for fprintf function pointer... yes
checking for fread function pointer... yes
checking for fseek function pointer... yes
checking for setvbuf function pointer... yes
checking for ftell function pointer... yes
checking for fwrite function pointer... yes
checking for memmove... (cached) yes
checking for fnmatch... yes
checking for isnan... yes
checking for fpclass... no
checking for strerror... (cached) yes
checking if setjmp and longjmp work... yes
checking for cos in -lm... yes
checking for szlib... suppressed
checking for hdf5... configure: checking for hdf5 and supporting libraries...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5open... yes
checking for a readline compatible library... -lreadline
checking readline.h usability... no
checking readline.h presence... no
checking for readline.h... no
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking whether readline supports history... yes
checking history.h usability... no
checking history.h presence... no
checking for history.h... no
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating SiloWindows/Makefile
config.status: creating svn_bin/Makefile
config.status: creating config/Makefile
config.status: creating config-site/Makefile
config.status: creating docs/Makefile
config.status: creating src/Makefile
config.status: creating src/score/Makefile
config.status: creating src/pdb/Makefile
config.status: creating src/silo/Makefile
config.status: creating src/silo/silo.h
config.status: creating src/debug/Makefile
config.status: creating src/netcdf/Makefile
config.status: creating src/pdb_drv/Makefile
config.status: creating src/pdbp_drv/Makefile
config.status: creating src/hdf5_drv/Makefile
config.status: creating src/taurus/Makefile
config.status: creating src/unknown/Makefile
config.status: creating src/filters/Makefile
config.status: creating tests/Makefile
config.status: creating tools/Makefile
config.status: creating tools/browser/Makefile
config.status: creating tools/python/Makefile
config.status: creating tools/silex/Makefile
config.status: creating tools/silock/Makefile
config.status: creating tools/json/Makefile
config.status: creating tools/mapred/Makefile
config.status: creating src/libsiloh5.settings
config.status: creating config.h
config.status: executing tests/atconfig commands
config.status: executing depfiles commands
config.status: executing libtool commands
SUMMARY OF THE Silo with HDF5 CONFIGURATION
=================================
Silo Version: 4.10.2
Configured on: Thu Aug 12 03:15:56 UTC 2021
Configured by: root@main-arm64-default-job-02
Configure command: ./configure '--enable-shared' '--disable-static' '--disable-fortran' '--with-hdf5=/usr/local/include,/usr/local/lib' '--disable-pythonmodule' '--prefix=/usr/local' '--localstatedir=/var' '--mandir=/usr/local/man' '--infodir=/usr/local/share/info/' '--build=aarch64-portbld-freebsd14.0' 'build_alias=aarch64-portbld-freebsd14.0' 'CXX=c++' 'CXXFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'LDFLAGS= -L/usr/local/lib -fstack-protector-strong ' 'LIBS=' 'CPPFLAGS=-I/usr/local/include' 'CC=cc' 'CFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'CPP=cpp'
Host system: aarch64-portbld-freebsd14.0
Build system: aarch64-portbld-freebsd14.0
Installation point: /usr/local
Source directory: @UsingSrcDir@
Archiver: ar
Ranlib: ranlib
Configure Summary
Compiling Options:
C Compiler /usr/bin/cc
CPPFLAGS -I/usr/local/include -I/usr/local/include
CFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement
LDFLAGS -L/usr/local/lib -L/usr/local/lib -fstack-protector-strong
LIBS -lhdf5 -lm
Languages:
C++ Compiler /usr/bin/c++
CXXFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing
Fortran Compiler
FCFLAGS
FCLIBS
Features:
Browser @UsingBrowser@
Readline @UsingReadline@
HDF5 @UsingHDF5@
Silex @UsingSilex@
Qt @UsingQt@
Qt moc Compiler
Qt CXXFLAGS
Qt LIBS
Python @UsingPython@
Python Compiler
Python CPPFLAGS
===========================================================================
=======================<phase: build >============================
===> Building for silo-4.10.2_14
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
gmake all-recursive
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
Making all in .
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
Making all in src
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src'
gmake all-recursive
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src'
Making all in score
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src/score'
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c -o memmove.lo memmove.c
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c -o scctla.lo scctla.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c scctla.c -fPIC -DPIC -o .libs/scctla.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c memmove.c -fPIC -DPIC -o .libs/memmove.o
mv -f .deps/memmove.Tpo .deps/memmove.Plo
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c -o scctl.lo scctl.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c scctl.c -fPIC -DPIC -o .libs/scctl.o
mv -f .deps/scctl.Tpo .deps/scctl.Plo
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c -o schash.lo schash.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c schash.c -fPIC -DPIC -o .libs/schash.o
mv -f .deps/scctla.Tpo .deps/scctla.Plo
/bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c -o scstr.lo scstr.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c scstr.c -fPIC -DPIC -o .libs/scstr.o
mv -f .deps/scstr.Tpo .deps/scstr.Plo
mv -f .deps/schash.Tpo .deps/schash.Plo
/bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -fstack-protector-strong -o libsilo_score.la memmove.lo scctla.lo scctl.lo schash.lo scstr.lo -lhdf5 -lm
libtool: link: ar cru .libs/libsilo_score.a .libs/memmove.o .libs/scctla.o .libs/scctl.o .libs/schash.o .libs/scstr.o
libtool: link: ranlib .libs/libsilo_score.a
Assertion failed: (mode == 'p' || mode == 't' || mode == 'x'), function ar_read_archive, file /usr/local/poudriere/jails/main-arm64/usr/src/usr.bin/ar/read.c, line 68.
Abort trap (core dumped)
gmake[5]: *** [Makefile:384: libsilo_score.la] Error 134
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src/score'
gmake[4]: *** [Makefile:559: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src'
gmake[3]: *** [Makefile:442: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd/src'
gmake[2]: *** [Makefile:437: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
gmake[1]: *** [Makefile:366: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10.2-bsd'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/silo