[package - 130powerpc64-quarterly][math/R-cran-units] Failed for R-cran-units-0.7.2 in stage
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Date: Tue, 03 Aug 2021 06:31:47 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: tota@FreeBSD.org
Log URL: http://foul1.nyi.freebsd.org/data/130powerpc64-quarterly/40ddde769e74/logs/R-cran-units-0.7.2.log
Build URL: http://foul1.nyi.freebsd.org/build.html?mastername=130powerpc64-quarterly&build=40ddde769e74
Log:
=>> Building math/R-cran-units
build started at Tue Aug 3 06:29:28 UTC 2021
port directory: /usr/ports/math/R-cran-units
package name: R-cran-units-0.7.2
building for: FreeBSD 130powerpc64-quarterly-job-08 13.0-RELEASE FreeBSD 13.0-RELEASE powerpc
maintained by: tota@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-units-0.7.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130powerpc64-quarterly-job-08] Installing pkg-1.16.3...
[130powerpc64-quarterly-job-08] Extracting pkg-1.16.3: .......... done
===> R-cran-units-0.7.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-units-0.7.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.7.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.7.2 for building
=> SHA256 Checksum OK for units_0.7-2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-units-0.7.2 for building
===> Extracting for R-cran-units-0.7.2
=> SHA256 Checksum OK for units_0.7-2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-units-0.7.2
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-units-0.7.2 depends on package: R-cran-Rcpp>=0.12.10 - not found
===> Installing existing package /packages/All/R-cran-Rcpp-1.0.6.txz
[130powerpc64-quarterly-job-08] Installing R-cran-Rcpp-1.0.6...
[130powerpc64-quarterly-job-08] `-- Installing R-4.1.0...
[130powerpc64-quarterly-job-08] | `-- Installing cairo-1.17.4,3...
[130powerpc64-quarterly-job-08] | | `-- Installing fontconfig-2.13.93_1,1...
[130powerpc64-quarterly-job-08] | | `-- Installing expat-2.4.1...
[130powerpc64-quarterly-job-08] | | `-- Extracting expat-2.4.1: .......... done
[130powerpc64-quarterly-job-08] | | `-- Installing freetype2-2.10.4...
[130powerpc64-quarterly-job-08] | | | `-- Installing png-1.6.37_1...
[130powerpc64-quarterly-job-08] | | | `-- Extracting png-1.6.37_1: .......... done
[130powerpc64-quarterly-job-08] | | `-- Extracting freetype2-2.10.4: .......... done
[130powerpc64-quarterly-job-08] | | `-- Extracting fontconfig-2.13.93_1,1: .......... done
[130powerpc64-quarterly-job-08] | | `-- Installing gettext-runtime-0.21...
[130powerpc64-quarterly-job-08] | | `-- Installing indexinfo-0.3.1...
[130powerpc64-quarterly-job-08] | | `-- Extracting indexinfo-0.3.1: .... done
[130powerpc64-quarterly-job-08] | | `-- Extracting gettext-runtime-0.21: .......... done
[130powerpc64-quarterly-job-08] | | `-- Installing glib-2.66.8,2...
[130powerpc64-quarterly-job-08] | | `-- Installing libffi-3.3_1...
<snip>
=====
Message from trousers-0.3.14_3:
--
To run tcsd automatically, add the following line to /etc/rc.conf:
tcsd_enable="YES"
You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.
If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:
tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"
To use TPM, add your_account to '_tss' group like following:
# pw groupmod _tss -m your_account
=====
Message from ghostscript9-agpl-base-9.52_18:
--
This package installs a script named dvipdf that depends on dvips. If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from dejavu-2.37_1:
--
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/share/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> R-cran-units-0.7.2 depends on package: R-cran-Rcpp>=0.12.10 - found
===> Returning to build of R-cran-units-0.7.2
===> R-cran-units-0.7.2 depends on file: /usr/local/bin/R - found
===> R-cran-units-0.7.2 depends on executable: gfortran10 - found
===> R-cran-units-0.7.2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> R-cran-units-0.7.2 depends on shared library: libudunits2.so - not found
===> Installing existing package /packages/All/udunits-2.2.28.txz
[130powerpc64-quarterly-job-08] Installing udunits-2.2.28...
[130powerpc64-quarterly-job-08] Extracting udunits-2.2.28: .......... done
===> R-cran-units-0.7.2 depends on shared library: libudunits2.so - found (/usr/local/lib/libudunits2.so)
===> Returning to build of R-cran-units-0.7.2
===========================================================================
=======================<phase: configure >============================
===> Configuring for R-cran-units-0.7.2
===========================================================================
=======================<phase: build >============================
===========================================================================
=======================<phase: run-depends >============================
===> R-cran-units-0.7.2 depends on package: R-cran-Rcpp>=0.12.10 - found
===> R-cran-units-0.7.2 depends on file: /usr/local/bin/R - found
===> R-cran-units-0.7.2 depends on executable: gfortran10 - found
===========================================================================
=======================<phase: stage >============================
===> Staging for R-cran-units-0.7.2
===> Generating temporary packing list
* installing *source* package 'units' ...
** package 'units' successfully unpacked and MD5 sums checked
** using staged installation
configure: units: 0.7-2
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ -std=gnu++14 accepts -g... yes
checking how to run the C++ preprocessor... c++ -std=gnu++14 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... no
checking for error_at_line... no
checking for gcc... cc
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for XML_ParserCreate in -lexpat... yes
checking udunits2.h usability... yes
checking udunits2.h presence... yes
checking for udunits2.h... yes
checking for ut_read_xml in -ludunits2... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-units/work/units/src'
c++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o
c++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=0 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c udunits.cpp -o udunits.o
c++ -std=gnu++14 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong -o units.so RcppExports.o udunits.o -lexpat -lexpat -ludunits2 -L/usr/local/lib/R/lib -lR
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-units/work/units/src'
installing to /wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/00LOCK-units/00new/units/libs
** R
** demo
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** caught segfault ***
address 0x6763635f65786364, cause 'memory not mapped'
Traceback:
1: R_ut_parse(u)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
6: try(R_ut_parse(u), silent = TRUE)
7: ud_is_parseable("B")
8: fun(libname, pkgname)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(fun(libname, pkgname), error = identity)
13: runHook(".onLoad", env, package.lib, package)
14: loadNamespace(package, lib.loc)
15: doTryCatch(return(expr), name, parentenv, handler)
16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
17: tryCatchList(expr, classes, parentenv, handlers)
18: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})
19: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
20: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
21: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
22: doTryCatch(return(expr), name, parentenv, handler)
23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
26: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
27: tools:::.test_load_package("units", "/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/00LOCK-units/00new")
An irrecoverable exception occurred. R is aborting now ...
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
*** caught segfault ***
address 0x6763635f65786364, cause 'memory not mapped'
Traceback:
1: R_ut_parse(u)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
6: try(R_ut_parse(u), silent = TRUE)
7: ud_is_parseable("B")
8: fun(libname, pkgname)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(fun(libname, pkgname), error = identity)
13: runHook(".onLoad", env, package.lib, package)
14: loadNamespace(package, lib.loc)
15: doTryCatch(return(expr), name, parentenv, handler)
16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
17: tryCatchList(expr, classes, parentenv, handlers)
18: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)})
19: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
20: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
21: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
22: doTryCatch(return(expr), name, parentenv, handler)
23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
26: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
27: tools:::.test_load_package("units", "/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library")
An irrecoverable exception occurred. R is aborting now ...
** testing if installed package keeps a record of temporary installation path
Warning in file(con, "rb") :
cannot open file '/tmp/Rtmpgkql3G/file16c021013af90': No such file or directory
Error in file(con, "rb") : cannot open the connection
* removing '/wrkdirs/usr/ports/math/R-cran-units/work/stage/usr/local/lib/R/library/units'
*** Error code 1
Stop.
make: stopped in /usr/ports/math/R-cran-units