From nobody Tue Jan 28 17:06:25 2025 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YjBX20fsSz5lmf8; Tue, 28 Jan 2025 17:06:26 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YjBX14rNmz44l0; Tue, 28 Jan 2025 17:06:25 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1738083985; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bXKo0aoskTn9w3BOEUamNz3bIlc0rmth7xNIrqo7Smc=; b=HJSHrhVDEN/DA+Zafyo8pVF9RhPIoHQhCrbi1PL3EWLNfMo1oI+r2jFbIFutX0WfgOskiS gu6bMNaybFy+O/qPOTqV00SkMgyyLIL46BKA5Jws9zTRhFDIrKQnJ4HKO6FfaQCU+OiLat tsUF80vEliZSdU0agbIaUGdvYy8BRZg0bJ91CnG2sgSdrlwlbUZSume7qopyLxAfuQ5xrQ iozLAyOwnXD919nT7aqZJY1u/2gdcGBcWBoTFsGMIm08HHI3eShLPFZJJaeCA/Hh6P1t/S ZlgOp7450sBNkHSccod7NL9HIQCnV56T0klmf55U3ynJCMF1nBajIjGZmwHuZw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1738083985; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bXKo0aoskTn9w3BOEUamNz3bIlc0rmth7xNIrqo7Smc=; b=Gld+W5SSVYydB90l5SL4leEbuhNYWUXOLmZ/rVSqE3TzR5zzPYHs/szk7cWIdG0/vYilzG lA3bNIjk0WFDTWL9BatLc9O5ZmTdb9MOUzZYa0QJ4PjcQmwmVCp3rNO+7UIS5xR2Cpyrbr LZ74KI8oHSSk0L5W/inuzdXL6rXIEo+5BmkeibhUgQznxn3QQnSVJ+spuN06ySBLG9ULMf l5V8yCV1uHpANc8WZoxiTkS2GlBNfvs3Lv2J9F7DiUUCXR1QHXrI58g75+sjou9LAiAegx F1PwCen2UfLE8Pt0tv1Jo4Ah+h8EtRymBZtkZ6YKoG+k5m/tki/ZzjO3nf233w== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1738083985; a=rsa-sha256; cv=none; b=GkvZqjzR23ywwi6pH0iSi9OAzFtd3dnRC/wO7lAnh8eRu+wxrduoCuZfDFPSULGYLbRk9O 3wYNL8Ctqy4cj0Bbv7xFUfyo03+Fhcohq4PWZda/NKSj6QhZhvcOTuIsm00VeLibH1wQLP AAHBMDS33z4zxZR5fCdLwXB97aUW1bAZkmoeJm3NcLO8k4IrInvOq7A0TLwHVjj5dcnbhM 0NhIcA9+6Xsost6QwPRrvub6kURg6blH7uRkrcs7JWSvi+0RMNHL2FZde4766D3BaqWchu XQdU5nwaVLFWNU9/T8vIO1nBe4ySm4Fn+ll73D8tSrNKnE1A5AoOwVQiTiiCiA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YjBX14N5dz8D0; Tue, 28 Jan 2025 17:06:25 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 50SH6PS5062061; Tue, 28 Jan 2025 17:06:25 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 50SH6PdR062058; Tue, 28 Jan 2025 17:06:25 GMT (envelope-from git) Date: Tue, 28 Jan 2025 17:06:25 GMT Message-Id: <202501281706.50SH6PdR062058@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: 9e122cc43f5a - main - science/py-pnetcdf: Add py-pnetcdf 1.0.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 9e122cc43f5abee5d6e3e34953ec3586ae75dea7 Auto-Submitted: auto-generated The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=9e122cc43f5abee5d6e3e34953ec3586ae75dea7 commit 9e122cc43f5abee5d6e3e34953ec3586ae75dea7 Author: Po-Chuan Hsieh AuthorDate: 2025-01-28 16:50:06 +0000 Commit: Po-Chuan Hsieh CommitDate: 2025-01-28 17:04:43 +0000 science/py-pnetcdf: Add py-pnetcdf 1.0.0 PnetCDF-Python is a Python interface to PnetCDF, a high-performance I/O library for accessing NetCDF files in parallel. It can provide MPI-based parallel python programs to achieve a scalable I/O performance. --- science/Makefile | 1 + science/py-pnetcdf/Makefile | 30 +++++++++++++++++++++++++++ science/py-pnetcdf/distinfo | 3 +++ science/py-pnetcdf/files/patch-pyproject.toml | 11 ++++++++++ science/py-pnetcdf/pkg-descr | 3 +++ 5 files changed, 48 insertions(+) diff --git a/science/Makefile b/science/Makefile index 80f95512340d..7c4802f84815 100644 --- a/science/Makefile +++ b/science/Makefile @@ -394,6 +394,7 @@ SUBDIR += py-periodictable SUBDIR += py-phono3py SUBDIR += py-phonopy + SUBDIR += py-pnetcdf SUBDIR += py-pupynere SUBDIR += py-py3Dmol SUBDIR += py-pyaixi diff --git a/science/py-pnetcdf/Makefile b/science/py-pnetcdf/Makefile new file mode 100644 index 000000000000..3bede6cc5d26 --- /dev/null +++ b/science/py-pnetcdf/Makefile @@ -0,0 +1,30 @@ +PORTNAME= pnetcdf +PORTVERSION= 1.0.0 +CATEGORIES= science python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Object-oriented python interface to the PnetCDF library +WWW= https://github.com/Parallel-NetCDF/PnetCDF-Python + +LICENSE= MIT + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mpi4py-mpich>=3.1.4:net/py-mpi4py-mpich@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}packaging>=23.1:devel/py-packaging@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools>=61:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} +LIB_DEPENDS= libpnetcdf.so:science/pnetcdf@mpich +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}mpi4py-mpich>=3.1.4:net/py-mpi4py-mpich@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} + +USES= localbase mpi:mpich python +USE_PYTHON= autoplist concurrent cython cython_run pep517 + +CFLAGS+= -I${MPI_HOME}/include + +post-install: + ${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name '*.so' -exec ${STRIP_CMD} {} + + +.include diff --git a/science/py-pnetcdf/distinfo b/science/py-pnetcdf/distinfo new file mode 100644 index 000000000000..5d81ea515129 --- /dev/null +++ b/science/py-pnetcdf/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1736671165 +SHA256 (pnetcdf-1.0.0.tar.gz) = b2de14944e921a10072b7b51e7f4664c7aa175dd54c3d61f50bd88c902a673cb +SIZE (pnetcdf-1.0.0.tar.gz) = 87294 diff --git a/science/py-pnetcdf/files/patch-pyproject.toml b/science/py-pnetcdf/files/patch-pyproject.toml new file mode 100644 index 000000000000..34c8eb10ccbc --- /dev/null +++ b/science/py-pnetcdf/files/patch-pyproject.toml @@ -0,0 +1,11 @@ +--- pyproject.toml.orig 2024-09-10 15:35:50 UTC ++++ pyproject.toml +@@ -2,7 +2,7 @@ requires = [ + requires = [ + "Cython>=0.29", + "numpy", +- "setuptools>=65", ++ "setuptools>=61", + "mpi4py>=3.1.4", + "packaging>=23.1", + "wheel" diff --git a/science/py-pnetcdf/pkg-descr b/science/py-pnetcdf/pkg-descr new file mode 100644 index 000000000000..9c342b89aea7 --- /dev/null +++ b/science/py-pnetcdf/pkg-descr @@ -0,0 +1,3 @@ +PnetCDF-Python is a Python interface to PnetCDF, a high-performance I/O library +for accessing NetCDF files in parallel. It can provide MPI-based parallel python +programs to achieve a scalable I/O performance.