From nobody Sat Jan 25 13:24:32 2025 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YgFlP0dH7z5lLMc; Sat, 25 Jan 2025 13:24:33 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YgFlP00L3z3wZb; Sat, 25 Jan 2025 13:24:33 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1737811473; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=xxxdG6e3blI6Fxb5PPQjbvXYcLLCyedwTlVCL5opFWo=; b=BGVIkXnnXdgJ3J0hjSlpHlzJRZjgeomSuo/gEla9Y0DDVLN+E+0DFEXO5/4nHS9lleFZIQ 55Z/us65A0CCOU/N7WgE068J9bg8nZRbU08BAzDgMSrF5cPH8z6YLRHRv/XhCEk+OJEwL/ wPDht4WvCKIABEo3/qI1WfPLc+aKM4NtVrNq9e5CyYKecMNl+a+Df4R8ACPY5k4qGzPSmr Cz5x9AUHEoE3cFth9rwlnx2tR+/WgNIrJ6A8pz+FekXQCBZvKZ008cingWY6Wg/6AWFySU hXc6ag3Ipw6Ac1em+c3WQh9s09w2bKJewSsSaSFJRMgxdaZLs20EZ7D8kXTzMw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1737811473; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=xxxdG6e3blI6Fxb5PPQjbvXYcLLCyedwTlVCL5opFWo=; b=GkeihpgWb8zxelRlRWYBASQzt2sVbOm3rSdfbfxcnl3qi14XPwhpsVJESicaUFs3J2+XpG Q9TJ7O9oW0h3R6TSbbWQpOhYXSWQ+sOUwbB3Co5lx6NktK7IaM4EDAaxH+V/+uqrwjaXEc hn6dkuBK4p803BFqVEktxms4S2IicYlZmNjUxIKJslhxY39NPrskAyJa33Hs8Nv5ru7lzY 1xZvh7ZrezvNseutGppNVNVgbq/oLTQRelKh7V32IFEvAeCYuqhi1zculaUzCiCdFlZEx9 v+P+gR1xy6cNU/vxpHEGDV4iAvjJvoTPslP5ZdOlSHSdl8z7zOMHrEEC6CA8zA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1737811473; a=rsa-sha256; cv=none; b=sHWAUX2OGOo0ke+8booi5A58qEHHea5+hp8+bCErylnbHUgyAGJv/H3xs0iBz0e6S3AxzR LeWUgJhlXi0v9oyxGovJLu6u3DHWB/QMacxhxWoQIfSLAxR5tAeAziTCpgVe1EWkULqULK nze21FzZCwghZ7gxc7rS8+ANY+nyu9oy29Ucbi8FtCk+ljIae7wwxuBhega2UZKlNAbg+u ikfufY4P23QGD9EuVFmP4icg47i3m19kge1v8BV/yl5MfJCCF8I4JHv/XfQo1Yr9LFBye7 yx49/zm/+2JHU5axyrHjgpYUfmaqM3hO3z/fjHtqGuSod60Nde2qiFUJ6VoH1Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YgFlN6Sqgz1D5S; Sat, 25 Jan 2025 13:24:32 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 50PDOWAt077741; Sat, 25 Jan 2025 13:24:32 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 50PDOW6a077738; Sat, 25 Jan 2025 13:24:32 GMT (envelope-from git) Date: Sat, 25 Jan 2025 13:24:32 GMT Message-Id: <202501251324.50PDOW6a077738@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 2889989be020 - main - biology/mmseqs2: Update to 17.b804.f List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2889989be020e1f7f0072226f2c87357c2fc15b5 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2889989be020e1f7f0072226f2c87357c2fc15b5 commit 2889989be020e1f7f0072226f2c87357c2fc15b5 Author: Jason W. Bacon AuthorDate: 2025-01-25 13:21:33 +0000 Commit: Jason W. Bacon CommitDate: 2025-01-25 13:24:31 +0000 biology/mmseqs2: Update to 17.b804.f MMseqs2 Release 17 is mostly a bug fix release. Highlights include usability improvements in MMseqs2-GPU and fix for a common crash in the prefilter that was affecting many clustering runs. Changes: https://github.com/soedinglab/MMseqs2/releases PR: 284165 Reported by: alster@vinterdalen.se --- biology/mmseqs2/Makefile | 6 +++--- biology/mmseqs2/distinfo | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/biology/mmseqs2/Makefile b/biology/mmseqs2/Makefile index c2c410252fd0..99675e1f9180 100644 --- a/biology/mmseqs2/Makefile +++ b/biology/mmseqs2/Makefile @@ -1,5 +1,5 @@ PORTNAME= MMseqs2 -DISTVERSION= 16-747c6 +DISTVERSION= 17-b804f CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -11,13 +11,13 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.md NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc powerpcspe -LIB_DEPENDS= libzstd.so:archivers/zstd +BUILD_DEPENDS= zstd>0:archivers/zstd USES= cmake perl5 shebangfix USE_GITHUB= yes +GH_ACCOUNT= soedinglab USE_PERL5= build -GH_ACCOUNT= soedinglab SHEBANG_GLOB= *.sh CMAKE_ARGS+= -DVERSION_OVERRIDE=${DISTVERSION} diff --git a/biology/mmseqs2/distinfo b/biology/mmseqs2/distinfo index 2cef8860912b..a43998998611 100644 --- a/biology/mmseqs2/distinfo +++ b/biology/mmseqs2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1733910529 -SHA256 (soedinglab-MMseqs2-16-747c6_GH0.tar.gz) = faeb6841feb8e028651c2391de1346c55c2091a96520b625525d27b99d07ef1d -SIZE (soedinglab-MMseqs2-16-747c6_GH0.tar.gz) = 13359879 +TIMESTAMP = 1737298121 +SHA256 (soedinglab-MMseqs2-17-b804f_GH0.tar.gz) = 300ebd14bf4e007b339037e5f73d8ff9c4e34f8495204c4a8c59c7672b689db2 +SIZE (soedinglab-MMseqs2-17-b804f_GH0.tar.gz) = 13364452