From nobody Fri Jan 24 08:46:59 2025 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YfWdb2Rpbz5l48n; Fri, 24 Jan 2025 08:46:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YfWdb1T2Sz3dVG; Fri, 24 Jan 2025 08:46:59 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1737708419; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=w6XSpLgtwIyWu8uS8MRoTdbU4+eQE2A0PB7tcdKDZ7E=; b=YrUGo2560o2m9HWrGM+IAtekm/Evac0g7IyefzwU4ApCpab0nDzD4W/9vk6QSpcT+HKJW4 Oi+Wv5OXF3b8z2CGgw8KD+wD9WrzaM/8beWxzeZmyrZNAlgSFVVcWRYGjOYrAIIE47nuyJ e0wffQ2DS2pWoXJs5AVaOPMbk4rFYpdmQjQh3A0ow8TqlRxDEqIAaUXl0RXV0AB/cXB4ce LA4x27qJhwujtmyRfBF3eXVRSFDSR7O0lrBfuoNIm5vhHk3m30DWiG54XmomvuxSLYIVcV KvT/II51NO6RIxLI84+IATfCiIWwNPt7DRMTpZoRVKH0pn6PqlrY/1ni874c6w== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1737708419; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=w6XSpLgtwIyWu8uS8MRoTdbU4+eQE2A0PB7tcdKDZ7E=; b=F5LWKrBAqgdUdK46CXQgCHAdRyrTm5Lyn7yMWDPrkNQ3lSe9hmjvzbiJN6qalmFpho8M0u xqFL5UYVEH2M/R7cdyJdKFrb8E0pBTG1ubK1hctdq2LgtjpnNXdT26v/bPZpDOhqRGBoLX cJ/E6BFd6Puk4EzNnYJL+4Mg2UJm7h7gBIeEWsnno+/80pUTZ1RjsIbxjoQipe6Im9BrdL hDvSM4egEEgQXOZ56SKr3K4sbcjjh2sVuZJxRpVYhQc/JzRcVZOYwy/fzlMucVTrSyZ7oS 4FtUOQy+Sr8XoLX443eSvYmlhUi6k1vfWyRBiAV/txDcbWi8Jk8AM/+lm99fQw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1737708419; a=rsa-sha256; cv=none; b=kyRzHftXZQdIzB/fv3dn3dqnTzvmGL8YWljSf9nHORIxpI+4lzz93u/vWWYzu/XQUddJdk eBHPoCTmCy8Vz+U0p0chfclCDUC/npwE/aPAfDNOaEOeKDCNGrPRDnsL/zb30YM+GuGLCO 667OrarPEx+JXZrUGEfEUzqRSpVJEkU70R/zkRkYyWhL1+bGQamgmt2FVKx/kqNLVMy1rB RfhX21Zgd5a/WEc6WWcPxPAXCFOAGD2Qo15JUAffJz6rmu/aVIBbY1d2V9xQ2DIJOjmYbM QeMSDDU7yO9MFVzz4TIWroonmrkSfYa3qSHKrTQFjmilzcjJ3bg5A3eEQSAaxg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YfWdb13V2z2jJ; Fri, 24 Jan 2025 08:46:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 50O8kxsJ049767; Fri, 24 Jan 2025 08:46:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 50O8kx76049762; Fri, 24 Jan 2025 08:46:59 GMT (envelope-from git) Date: Fri, 24 Jan 2025 08:46:59 GMT Message-Id: <202501240846.50O8kx76049762@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: cdb84f1ab2ca - main - =?utf-8?Q?science/py-pymatgen: update 2024.11.13 =E2=86=92 2025.1.23?= List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: cdb84f1ab2ca289c6736f832e0856d71af855744 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=cdb84f1ab2ca289c6736f832e0856d71af855744 commit cdb84f1ab2ca289c6736f832e0856d71af855744 Author: Yuri Victorovich AuthorDate: 2025-01-24 08:46:28 +0000 Commit: Yuri Victorovich CommitDate: 2025-01-24 08:46:52 +0000 science/py-pymatgen: update 2024.11.13 → 2025.1.23 Reported by: portscout --- science/py-pymatgen/Makefile | 27 ++++++++++++++++++++------- science/py-pymatgen/distinfo | 6 +++--- 2 files changed, 23 insertions(+), 10 deletions(-) diff --git a/science/py-pymatgen/Makefile b/science/py-pymatgen/Makefile index 6060a6f4b40d..b17cdd97b6bc 100644 --- a/science/py-pymatgen/Makefile +++ b/science/py-pymatgen/Makefile @@ -1,6 +1,6 @@ PORTNAME= pymatgen DISTVERSIONPREFIX= v -DISTVERSION= 2024.11.13 +DISTVERSION= 2025.1.23 CATEGORIES= science python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -18,7 +18,7 @@ BUILD_DEPENDS= ${PYNUMPY} \ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:www/py-beautifulsoup@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}joblib>=1:devel/py-joblib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.8:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}monty>=2024.10.21:devel/py-monty@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}monty>=2025.1.9:devel/py-monty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=2.7:math/py-networkx@${PY_FLAVOR} \ ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}palettable>=3.3.3:misc/py-palettable@${PY_FLAVOR} \ @@ -28,7 +28,6 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:www/py-beautifulsoup@${PY_FL ${PYTHON_PKGNAMEPREFIX}requests>=2.32:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>=0.17.0:devel/py-ruamel.yaml@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.13.0:science/py-scipy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=1.14.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=2.5.0:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>=1.3:math/py-sympy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tabulate>=0.9:devel/py-tabulate@${PY_FLAVOR} \ @@ -42,7 +41,10 @@ USE_PYTHON= pep517 cython concurrent autoplist pytest USE_GITHUB= yes GH_ACCOUNT= materialsproject -TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} \ + PMG_TEST_FILES_DIR=${WRKSRC}/tests/files \ + DISPLAY=${DISPLAY} \ + XAUTHORITY=${XAUTHORITY} TEST_WRKSRC= ${WRKSRC}/tests post-install: # strip binaries @@ -51,8 +53,19 @@ post-install: # strip binaries optimization/neighbors*.so \ util/coord_cython*.so -# tests fail to find some files: https://github.com/materialsproject/pymatgen/issues/4172 -xpre-test: - @cd ${TEST_WRKSRC} && ${PYTHON_CMD} ${PYSETUP} build_ext --inplace +#tests as of 2025.1.23: +# Results (4206.00s (1:10:05)): +# 2743 passed +# 9 failed +# - tests/analysis/test_chempot_diagram.py:71 TestChemicalPotentialDiagram.test_pca +# - tests/cli/test_pmg_analyze.py:13 test_pmg_analyze +# - tests/cli/test_pmg_diff.py:12 test_pmg_diff +# - tests/cli/test_pmg_plot.py:15 test_plot_xrd +# - tests/cli/test_pmg_plot.py:31 test_plot_dos +# - tests/cli/test_pmg_plot.py:47 test_plot_chgint +# - tests/cli/test_pmg_plot.py:63 test_plot_wrong_arg +# - tests/cli/test_pmg_structure.py:13 test_pmg_structure +# - tests/core/test_structure.py:1770 TestStructure.test_charge +# 194 skipped .include diff --git a/science/py-pymatgen/distinfo b/science/py-pymatgen/distinfo index ae9b145d0114..8cf9be075657 100644 --- a/science/py-pymatgen/distinfo +++ b/science/py-pymatgen/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1731622067 -SHA256 (materialsproject-pymatgen-v2024.11.13_GH0.tar.gz) = b780cc395007f5793d1823d4b0b83ed99cfec10d4834bb8e640e92c65627dbe5 -SIZE (materialsproject-pymatgen-v2024.11.13_GH0.tar.gz) = 262224927 +TIMESTAMP = 1737700626 +SHA256 (materialsproject-pymatgen-v2025.1.23_GH0.tar.gz) = 68eafa7d148119a3aa739fd514f9f9cecfb03b316e41f29d3f87a84bb4872670 +SIZE (materialsproject-pymatgen-v2025.1.23_GH0.tar.gz) = 262615770