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Bacon" Subject: git: 695d1ac4d136 - main - biology/py-bcbio-gff: Update to 0.7.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 695d1ac4d136d7c115e65dd42d331a2edfde7078 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=695d1ac4d136d7c115e65dd42d331a2edfde7078 commit 695d1ac4d136d7c115e65dd42d331a2edfde7078 Author: Jason W. Bacon AuthorDate: 2025-01-16 12:55:42 +0000 Commit: Jason W. Bacon CommitDate: 2025-01-16 12:55:42 +0000 biology/py-bcbio-gff: Update to 0.7.1 A few fixes and updates Changes: https://github.com/chapmanb/bcbb/commits/master/ PR: 283253 Reported by: alster@vinterdalen.se --- biology/py-bcbio-gff/Makefile | 6 ++++-- biology/py-bcbio-gff/distinfo | 6 +++--- biology/py-bcbio-gff/pkg-descr | 7 +++++++ 3 files changed, 14 insertions(+), 5 deletions(-) diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile index 60b3d02e75a3..325a33a56077 100644 --- a/biology/py-bcbio-gff/Makefile +++ b/biology/py-bcbio-gff/Makefile @@ -1,12 +1,14 @@ PORTNAME= bcbio-gff -DISTVERSION= 0.7.0 +DISTVERSION= 0.7.1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Read and write Generic Feature Format (GFF) with Biopython integration -WWW= https://pypi.python.org/project/bcbio-gff/ +WWW= https://pypi.org/project/bcbio-gff/ \ + https://biopython.org/wiki/GFF_Parsing \ + https://github.com/chapmanb/bcbb/tree/master/gff/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE diff --git a/biology/py-bcbio-gff/distinfo b/biology/py-bcbio-gff/distinfo index 98af4e778943..ce539a582ab7 100644 --- a/biology/py-bcbio-gff/distinfo +++ b/biology/py-bcbio-gff/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1678969796 -SHA256 (bcbio-gff-0.7.0.tar.gz) = f7b3922ee274106f8716703f41f05a1795aa9d73e903f4e481995ed8f5f65d2d -SIZE (bcbio-gff-0.7.0.tar.gz) = 20041 +TIMESTAMP = 1733918562 +SHA256 (bcbio-gff-0.7.1.tar.gz) = d1dc3294147b95baced6033f6386a0fed45c43767ef02d1223df5ef497e9cca6 +SIZE (bcbio-gff-0.7.1.tar.gz) = 20102 diff --git a/biology/py-bcbio-gff/pkg-descr b/biology/py-bcbio-gff/pkg-descr index e93a50068fca..9276c8e5cb24 100644 --- a/biology/py-bcbio-gff/pkg-descr +++ b/biology/py-bcbio-gff/pkg-descr @@ -1 +1,8 @@ Read and write Generic Feature Format (GFF) with Biopython integration. + +Generic Feature Format (GFF) is a biological sequence file format for +representing features and annotations on sequences. It is a tab delimited +format, making it accessible to biologists and editable in text editors and +spreadsheet programs. It is also well defined and can be parsed via automated +programs. GFF files are available from many of the large sequencing and +annotation centers.